Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A38 F30 I1 R1	19	117.7	4008588	99.4%	3984536	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,612,531	G→T	A223S (GCG→TCG)	yhhT →	putative transporter YhhT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,612,531	0	G	T	99.4%	568.4 / ‑3.4	162	A223S (GCG→TCG)	yhhT	putative transporter YhhT
Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (87/74); total (88/74)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.73e-01

Only 100 of 167 total aligned reads displayed.

TAATCCACAGATTCACATCGCGGGATTACACCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTGCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGGTGTTTACGAATGTATTCTGGTCGGCGCATTG  >  NC_000913/3612395‑3612665

taatCCACAGATTCACATCGCGGGATTACACCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTtcgc                                                                                                                                     <  2:1807132/140‑1 (MQ=255)

   tCCACAGATTCACATCGCGGGATTACACCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGa                                                                                                                                  >  2:118139/1‑140 (MQ=255)

    ccACAGATTCACATCGCGGGATTACTCCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGAt                                                                                                                                 <  1:687092/140‑1 (MQ=255)

       caGATTCACATCGCGGGATTACACCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGAtgtg                                                                                                                              <  1:1296189/140‑1 (MQ=255)

        aGATTCACATCGCGGGATTACACCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGAt                                                                                                                                 >  1:1962480/1‑136 (MQ=255)

        aGATTCACATCGCGGGATTACACCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGAt                                                                                                                                 <  2:1962480/136‑1 (MQ=255)

        aGATTCACATCGCGGGATTACACCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTgg                                                                                                                             >  1:288524/1‑140 (MQ=255)

         gATTCACATCGCGGGATTACACCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTggg                                                                                                                            <  2:66839/140‑1 (MQ=255)

             cacaTCGCGGGATTACACCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGt                                                                                                                        >  1:843862/1‑140 (MQ=255)

                    cgGGATTACACCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCg                                                                                                                 >  1:511887/1‑140 (MQ=255)

                     gggATTACACCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGt                                                                                                                <  2:1266772/140‑1 (MQ=255)

                     gggATTACACCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGt                                                                                                                <  2:843862/140‑1 (MQ=255)

                       gATTACACCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGttt                                                                                                              <  2:474851/140‑1 (MQ=255)

                            cacCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCt                                                                                                         <  2:643104/140‑1 (MQ=255)

                               cgcgCACTTAAAGGCGTTTAGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCaa                                                                                                      >  1:501258/1‑140 (MQ=255)

                                 cgcACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGt                                                                                                                <  1:1051817/128‑1 (MQ=255)

                                 cgcACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCt                                                                                                         >  1:428714/1‑135 (MQ=255)

                                 cgcACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCt                                                                                                         <  2:428714/135‑1 (MQ=255)

                                 cgcACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACt                                                                                                    >  1:783198/1‑140 (MQ=255)

                                 cgcACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACt                                                                                                    >  1:1821767/1‑140 (MQ=255)

                                 cgcACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACt                                                                                                    >  2:238821/1‑140 (MQ=255)

                                 cgcACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACt                                                                                                    >  2:1129574/1‑140 (MQ=255)

                                 cgcACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACt                                                                                                    >  2:524209/1‑140 (MQ=255)

                                  gcACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTa                                                                                                   >  1:1279772/1‑140 (MQ=255)

                                   cACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTAc                                                                                                  >  2:219976/1‑140 (MQ=255)

                                   cACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTAc                                                                                                  >  2:751712/1‑140 (MQ=255)

                                    aCTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACg                                                                                                 <  2:1243541/140‑1 (MQ=255)

                                      ttAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTg                                                                                               <  2:511887/140‑1 (MQ=255)

                                          aGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCa                                                                                           >  2:1861816/1‑140 (MQ=255)

                                                ttCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAatat                                                                                       <  2:1564123/138‑1 (MQ=255)

                                                ttCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAatat                                                                                       >  1:1564123/1‑138 (MQ=255)

                                                ttCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCg                                                                                     >  2:1495610/1‑140 (MQ=255)

                                                     aCTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGcgcg                                                                                <  1:713056/140‑1 (MQ=255)

                                                          cTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAAt                                                                           <  1:1199583/140‑1 (MQ=255)

                                                          cTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAAt                                                                           <  1:136778/140‑1 (MQ=255)

                                                            tGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAAttt                                                                         >  1:45988/1‑140 (MQ=255)

                                                              cATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGgc                                                                                   >  1:328310/1‑128 (MQ=255)

                                                              cATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGgc                                                                                   <  2:328310/128‑1 (MQ=255)

                                                              cATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTcc                                                                       >  1:637037/1‑140 (MQ=255)

                                                              cATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTcc                                                                       <  1:257653/140‑1 (MQ=255)

                                                                 tGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTccgcc                                                                    >  1:1825331/1‑140 (MQ=255)

                                                                 tGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTccgcc                                                                    >  2:472578/1‑140 (MQ=255)

                                                                  gAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTccgccg                                                                   <  1:219976/140‑1 (MQ=255)

                                                                   aaGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAGCTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGt                                                                  >  2:832302/1‑140 (MQ=255)

                                                                   aaGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGt                                                                  >  1:586562/1‑140 (MQ=255)

                                                                   aaGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGt                                                                  >  2:716800/1‑140 (MQ=255)

                                                                   aaGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGt                                                                  >  1:1071430/1‑140 (MQ=255)

                                                                   aaGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGt                                                                  >  2:1381725/1‑140 (MQ=255)

                                                                   aaGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGt                                                                  >  1:1100033/1‑140 (MQ=255)

                                                                   aaGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGt                                                                  >  2:1401182/1‑140 (MQ=255)

                                                                   aaGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGt                                                                  >  2:338731/1‑140 (MQ=255)

                                                                   aaGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGt                                                                  >  1:1922416/1‑140 (MQ=255)

                                                                   aaGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTCCCGCCGt                                                                  >  1:1740182/1‑140 (MQ=255)

                                                                   aaGACGCTACTCAGTTTATGGACAGGGGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTtcgccgc                                                                  >  1:502345/1‑139 (MQ=255)

                                                                        gCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTa                                                                 >  1:269623/1‑136 (MQ=255)

                                                                        gCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTa                                                                 <  2:269623/136‑1 (MQ=255)

                                                                         cTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGcc                                                            <  1:338731/140‑1 (MQ=255)

                                                                            cTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAAt                                                         <  2:546628/140‑1 (MQ=255)

                                                                                 tttATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTc                                                    >  2:903514/1‑140 (MQ=255)

                                                                                  ttATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCa                                                   >  1:722625/1‑140 (MQ=255)

                                                                                    aTGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTc                                                    <  1:1248579/137‑1 (MQ=255)

                                                                                    aTGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAgg                                                 <  1:589768/140‑1 (MQ=255)

                                                                                      ggACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGtg                                               >  1:1005216/1‑140 (MQ=255)

                                                                                      ggACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGtg                                               >  2:1455372/1‑140 (MQ=255)

                                                                                      ggACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGtg                                               >  1:1026026/1‑140 (MQ=255)

                                                                                         cAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGtgctg                                            <  1:1069971/140‑1 (MQ=255)

                                                                                           ggTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAgg                                                 >  1:1590196/1‑133 (MQ=255)

                                                                                           ggTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTgctgct                                          >  2:1407523/1‑140 (MQ=255)

                                                                                           ggTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTgctgct                                          >  1:314446/1‑140 (MQ=255)

                                                                                           ggTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGCTAATTTCCGCCGTACCGCCAATGATTCAgg                                                 <  2:1590196/133‑1 (MQ=255)

                                                                                           ggTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGGGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTgctgct                                          >  1:1653293/1‑140 (MQ=255)

                                                                                           ggTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGGGCAGTTTTGGCTGATGTGGGCGGGACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTgctgct                                          >  2:1801133/1‑140 (MQ=255)

                                                                                           ggTGTCATCGTCTGGCCGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTgctgct                                          >  1:1164015/1‑140 (MQ=255)

                                                                                             tgtCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGt                                        <  2:1286636/140‑1 (MQ=255)

                                                                                                cATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCG‑TTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTaa                                    <  2:264837/140‑1 (MQ=255)

                                                                                                 agggTCTGGCGGGGGCTGGGGCTAAGGGGGGGGCATTTTCCGTAGAGGTGGGCGGTACGGGCTTTTTTTCTCAACTCCGTGCCCAATTACGGCGCGTGAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTaa                                    <  2:502345/137‑1 (MQ=255)

                                                                                                 aTCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTaa                                    <  1:1623089/140‑1 (MQ=255)

                                                                                                   cGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATg                                  <  1:1129574/140‑1 (MQ=255)

                                                                                                   cGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATg                                  <  2:722625/140‑1 (MQ=255)

                                                                                                   cGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATg                                  <  2:1825331/140‑1 (MQ=255)

                                                                                                   cGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATg                                  <  1:405695/140‑1 (MQ=255)

                                                                                                   cGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATg                                  <  1:952804/140‑1 (MQ=255)

                                                                                                      ctggctggGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGgtt                               <  2:637037/140‑2 (MQ=255)

                                                                                                      ctggctggGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGgtg                               <  2:314446/140‑1 (MQ=255)

                                                                                                      ctggctggGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGgtg                               <  1:1415127/140‑1 (MQ=255)

                                                                                                       tggctggGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGtgc                                              <  1:527860/124‑1 (MQ=255)

                                                                                                       tggctggGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTaa                                    >  1:1386392/1‑134 (MQ=255)

                                                                                                       tggctggGGCTGGAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGgtgt                              >  2:1926500/1‑140 (MQ=255)

                                                                                                        ggctggggctggAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGGTGtt                             <  2:1653293/140‑1 (MQ=255)

                                                                                                          ctggggctggAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGGTGTTTa                           <  2:1064841/140‑1 (MQ=255)

                                                                                                          ctggggctggAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGGTGTTTa                           <  2:1100033/140‑1 (MQ=255)

                                                                                                          ctggggctggAGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGGTGTTTa                           <  1:751712/140‑1 (MQ=255)

                                                                                                                    aGCTGATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGGTGTTTACGAATGTAtt                 <  1:1484354/140‑1 (MQ=255)

                                                                                                                        gATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGGTGTTTACGAAt                      >  2:1739028/1‑131 (MQ=255)

                                                                                                                        gATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGGTGTTTACGAATGTATTCTgg             >  2:213487/1‑140 (MQ=255)

                                                                                                                        gATGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGGTGTTTACGAATGTATTCTgg             <  1:991333/140‑1 (MQ=255)

                                                                                                                         aTGGGGGTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGGTGTTTACGAATGTATTCTGGt            >  2:167985/1‑140 (MQ=255)

                                                                                                                             gggTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGGTGTTTACGAATGTATTCTGGTCGgc        >  2:1339274/1‑140 (MQ=255)

                                                                                                                              ggTGCAGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGGTGTTTACGAATGTATTCTGGTCGgcg       >  2:966549/1‑140 (MQ=255)

                                                                                                                                   aGTTTTCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCCCCAATGATTCAGGTGCTGCTGTTTAATGGTGTTTACGAATGTATTCTGGTCGGCGCATTg  >  2:1245722/1‑140 (MQ=255)

TAATCCACAGATTCACATCGCGGGATTACACCGCGCACTTAAAGGCGTTTCGCACTATCTTGCATTGAAGACGCTACTCAGTTTATGGACAGGTGTCATCGTCTGGCTGGGGCTGGAGCTGATGGGGGTGCAGTTTGCGCTGATGTGGGCAGTACTGGCGTTTTTGCTCAACTACGTGCCCAATATCGGCGCGGTAATTTCCGCCGTACCGCCAATGATTCAGGTGCTGCTGTTTAATGGTGTTTACGAATGTATTCTGGTCGGCGCATTG  >  NC_000913/3612395‑3612665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A