Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F30 I1 R1	22	86.6	2975400	99.4%	2957547	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,190,205	C→A	L109I (CTC→ATC)	yqiH →	putative fimbrial chaperone YqiH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,190,205	0	C	A	100.0%	372.2 / NA	105	L109I (CTC→ATC)	yqiH	putative fimbrial chaperone YqiH
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (48/57); total (48/57)

Only 100 of 108 total aligned reads displayed.

AAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGA  >  NC_000913/3190068‑3190337

aagaTACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGatc                                                                                                                                    >  1:877029/1‑140 (MQ=255)

aagaTACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGatc                                                                                                                                    >  1:308892/1‑140 (MQ=255)

  gaTACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGAtctt                                                                                                                                  <  2:1349900/140‑1 (MQ=255)

  gaTACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGAtctt                                                                                                                                  >  2:1203338/1‑140 (MQ=255)

    tACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGAtcttct                                                                                                                                >  1:1434997/1‑140 (MQ=255)

     aCGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTa                                                                                                                               >  2:1302379/1‑140 (MQ=255)

           ggCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTaa                                                                                                                         >  2:879296/1‑140 (MQ=255)

           ggCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTaa                                                                                                                         <  1:301435/140‑1 (MQ=255)

           ggCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTaa                                                                                                                         <  1:879296/140‑1 (MQ=255)

              aaTAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGt                                                                                                                      <  2:308892/140‑1 (MQ=255)

              aaTAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGt                                                                                                                      <  1:112442/140‑1 (MQ=255)

              aaTAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGt                                                                                                                      >  1:1336908/1‑140 (MQ=255)

                 aaaTCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCg                                                                                                                   <  2:877029/140‑1 (MQ=255)

                      gcgTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGaaa                                                                                                              >  1:1399036/1‑140 (MQ=255)

                       cgTGACTTTATTGTTACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAAt                                                                                                             >  2:626376/1‑140 (MQ=255)

                        gTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATa                                                                                                            <  1:212822/140‑1 (MQ=255)

                        gTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATa                                                                                                            <  1:136055/140‑1 (MQ=255)

                        gTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATa                                                                                                            <  2:360088/140‑1 (MQ=255)

                         tGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATAc                                                                                                           <  1:1302379/140‑1 (MQ=255)

                                aTTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCaa                                                                                                    >  1:202955/1‑140 (MQ=255)

                                       cTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAt                                                                                             >  2:1343339/1‑140 (MQ=255)

                                         gTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATaa                                                                                           >  2:100077/1‑140 (MQ=255)

                                          ttCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATaaa                                                                                          >  1:1463949/1‑140 (MQ=255)

                                           tcctccAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATaaaa                                                                                         >  2:673469/1‑140 (MQ=255)

                                              tccAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATaaaaaaa                                                                                      >  1:952521/1‑140 (MQ=255)

                                               ccAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGcc                                                                                                       <  2:302065/122‑1 (MQ=255)

                                               ccAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGcc                                                                                                       >  1:302065/1‑122 (MQ=255)

                                               ccAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATaaaaaaaa                                                                                     >  2:975723/1‑140 (MQ=255)

                                                 aaTGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAAtg                                                                                   <  1:673469/140‑1 (MQ=255)

                                                  aTGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCaaaa                                                                                                  >  1:502726/1‑124 (MQ=255)

                                                  aTGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCaaaa                                                                                                  <  2:502726/124‑1 (MQ=255)

                                                  aTGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAAtgt                                                                                  >  1:246099/1‑140 (MQ=255)

                                                   tGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAAtgtg                                                                                 <  2:1336908/140‑1 (MQ=255)

                                                    ggTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGa                                                                                >  1:754124/1‑140 (MQ=255)

                                                      tGCGTTTAAATCCCAGTGAGCAAATTGAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATg                                                                              >  2:1375029/1‑140 (MQ=255)

                                                      tGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATg                                                                              >  2:1269585/1‑140 (MQ=255)

                                                      tGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATg                                                                              >  2:1268547/1‑140 (MQ=255)

                                                      tGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATg                                                                              >  2:403538/1‑140 (MQ=255)

                                                      tGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATg                                                                              <  1:1023366/140‑1 (MQ=255)

                                                      tGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATg                                                                              >  1:672974/1‑140 (MQ=255)

                                                      tGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATg                                                                              >  1:1384381/1‑140 (MQ=255)

                                                        cGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCa                                                                            <  2:1463949/140‑1 (MQ=255)

                                                        cGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCa                                                                            <  2:459066/140‑1 (MQ=255)

                                                        cGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCa                                                                            <  2:1245259/140‑1 (MQ=255)

                                                        cGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCa                                                                            >  1:560638/1‑140 (MQ=255)

                                                        cGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCa                                                                            <  2:1180226/140‑1 (MQ=255)

                                                        cGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCa                                                                            <  2:699760/140‑1 (MQ=255)

                                                        cGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCa                                                                            <  1:1132349/140‑1 (MQ=255)

                                                        cGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCa                                                                            <  1:626376/140‑1 (MQ=255)

                                                        cGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCa                                                                            <  2:865977/140‑1 (MQ=255)

                                                             aaaTCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCa                                                                       <  1:403538/140‑1 (MQ=255)

                                                              aaTCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCAc                                                                      <  2:1399036/140‑1 (MQ=255)

                                                               aTCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACt                                                                     <  2:1148365/140‑1 (MQ=255)

                                                                  ccAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATg                                                                  >  2:788692/1‑140 (MQ=255)

                                                                  ccAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATg                                                                  >  2:401669/1‑140 (MQ=255)

                                                                    aGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgca                                                                >  1:1478459/1‑140 (MQ=255)

                                                                       gAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgcagca                                                             <  2:1322767/140‑1 (MQ=255)

                                                                          cAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATg                                                                  <  2:221827/132‑1 (MQ=255)

                                                                          cAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATg                                                                  >  1:221827/1‑132 (MQ=255)

                                                                            aaTTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCAt                                                        <  1:555756/140‑1 (MQ=255)

                                                                            aaTTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCAt                                                        <  2:1409960/140‑1 (MQ=255)

                                                                            aaTTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTACCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCAt                                                        <  1:937608/140‑1 (MQ=255)

                                                                             aTTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCAtt                                                       >  1:506153/1‑140 (MQ=255)

                                                                              ttCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTg                                                      >  1:848534/1‑140 (MQ=255)

                                                                               tCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGa                                                     <  1:13718/140‑1 (MQ=255)

                                                                                        aaTGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCt                                            >  2:1396728/1‑140 (MQ=255)

                                                                                           gATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggc                                         <  2:754124/140‑1 (MQ=255)

                                                                                            aTAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggcg                                        >  2:694154/1‑140 (MQ=255)

                                                                                             tAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggcgg                                       >  2:322668/1‑140 (MQ=255)

                                                                                                  cAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCaaa                                  >  1:25190/1‑140 (MQ=255)

                                                                                                  cAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCaaa                                  >  2:482034/1‑140 (MQ=255)

                                                                                                     gAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGc                               >  2:47250/1‑140 (MQ=255)

                                                                                                     gAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGc                               >  1:209425/1‑140 (MQ=255)

                                                                                                      aaaaaaTAGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGcc                              <  1:62281/140‑1 (MQ=255)

                                                                                                       aaaaaTTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCa                             <  2:1370248/140‑1 (MQ=255)

                                                                                                       aaaaaTTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCa                             <  2:6617/140‑1 (MQ=255)

                                                                                                         aaaTTGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCAtt                           <  2:506153/140‑1 (MQ=255)

                                                                                                             tGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTg                          >  2:578528/1‑137 (MQ=255)

                                                                                                             tGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTg                          <  1:578528/137‑1 (MQ=255)

                                                                                                             tGCTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAAt                       <  1:482034/140‑1 (MQ=255)

                                                                                                               cTCAACTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTa                     >  2:1463539/1‑140 (MQ=255)

                                                                                                                  aaCTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTagaa                  <  2:209425/140‑1 (MQ=255)

                                                                                                                  aaCTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTagaa                  <  1:665178/140‑1 (MQ=255)

                                                                                                                    cTTCCTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTagaaga                <  2:528362/140‑1 (MQ=255)

                                                                                                                       ccTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGa             <  1:100077/140‑1 (MQ=255)

                                                                                                                       ccTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCC‑AAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGAt            <  1:1358508/140‑1 (MQ=255)

                                                                                                                        cTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGAt            <  2:560638/140‑1 (MQ=255)

                                                                                                                        cTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGAt            <  1:1177231/140‑1 (MQ=255)

                                                                                                                        cTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGAt            <  2:1434997/140‑1 (MQ=255)

                                                                                                                        cTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGAt            <  1:401669/140‑1 (MQ=255)

                                                                                                                        cTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGAt            <  2:848534/140‑1 (MQ=255)

                                                                                                                        cTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGAt            <  1:788692/140‑1 (MQ=255)

                                                                                                                        cTAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGAt            <  1:1051464/140‑1 (MQ=255)

                                                                                                                         tAAAGACAGAGAAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATg           <  2:25190/140‑1 (MQ=255)

                                                                                                                                 gagaAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATg   >  1:630389/1‑140 (MQ=255)

                                                                                                                                  agaAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGAt            >  2:1074583/1‑130 (MQ=255)

                                                                                                                                  agaAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGAt            <  1:1074583/130‑1 (MQ=255)

                                                                                                                                  agaAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGa  >  2:153424/1‑140 (MQ=255)

                                                                                                                                  agaAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGa  >  2:1486403/1‑140 (MQ=255)

                                                                                                                                  agaAACGATCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGa  >  1:603695/1‑140 (MQ=255)

AAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGA  >  NC_000913/3190068‑3190337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A