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Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F60 I1 R1	18	56.4	1905474	98.8%	1882608	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,062,185	Δ462 bp		[yihN]	[yihN]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4062185	4062646	462	72 [0]	[0] 72	[yihN]	[yihN]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4062184	0 (0.000)	72 (1.300)	55/274	0.0	100%	intergenic (+39/‑63)	yihM/yihN	putative TIM barrel domain‑containing protein YihM/putative transporter YihN
*	?	NC_000913	4062647 =	0 (0.000)	72 (1.300)	55/274	0.0	100%	coding (401/1266 nt)	yihN	putative transporter YihN

GATK/CNVnator alignment

N/A