Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A17 F60 I1 R1 17 84.8 2859184 99.1% 2833451 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 3,805,562 IS1 (+) +9 bp coding (381‑389/798 nt) waaP ← lipopolysaccharide core heptose (I) kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1978503 =NA (NA)101 (1.200) 60/276 0.2 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 3805562 = 0 (0.000)coding (389/798 nt) waaP lipopolysaccharide core heptose (I) kinase
* ? NC_000913 3583428 =NA (NA)111 (1.330) 66/274 0.1 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 = 3805570 0 (0.000)coding (381/798 nt) waaP lipopolysaccharide core heptose (I) kinase

Only 100 of 101 total aligned reads displayed.

CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1978640‑1978503
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATCAACGCCAACATCACTC  >  NC_000913/3805562‑3805699
                                                                                                                                                                                                                                                                                    
CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGC                                                                                                                                          >  1:1058747/1‑140
CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGC                                                                                                                                          <  1:695121/140‑1
CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGC                                                                                                                                          <  2:257730/140‑1
CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGC                                                                                                                                          <  2:694009/140‑1
   AACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCA                                                                                                                                       <  2:146858/140‑1
     CCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAAT                                                                                                                                     >  2:1053679/1‑140
     CCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAAT                                                                                                                                     >  2:1115955/1‑140
     CCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAAT                                                                                                                                     >  2:1144530/1‑140
     CCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGC                                                                                                                                          >  1:1033494/1‑135
     CCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGC                                                                                                                                          <  2:1033494/135‑1
       TGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCG                                                                                                                                   <  1:998432/140‑1
       TGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCG                                                                                                                                   <  1:870373/140‑1
          ATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCA                                                                                                                                >  1:989366/1‑140
          ATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCA                                                                                                                                <  1:321087/140‑1
          ATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCA                                                                                                                                >  2:535545/1‑140
           TCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCAC                                                                                                                               >  2:862264/1‑140
            CTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACA                                                                                                                              <  2:379800/140‑1
               AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATA                                                                                                                           <  2:1058747/140‑1
               AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATA                                                                                                                           <  1:805339/140‑1
               AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATA                                                                                                                           >  2:207215/1‑140
               AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATA                                                                                                                           >  2:1317390/1‑140
               AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAAT                                                                                                                                     >  1:112434/1‑130
               AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAAT                                                                                                                                     <  2:112434/130‑1
                GGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAA                                                                                                                          >  2:118128/1‑140
                     CACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTC                                                                                                                     >  2:479277/1‑140
                     CACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTC                                                                                                                     >  1:1054704/1‑140
                         TGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGG                                                                                                                 <  2:697239/140‑1
                         TGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGG                                                                                                                 <  1:1115955/140‑1
                         TGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGG                                                                                                                 <  2:920240/140‑1
                         TGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGG                                                                                                                 <  1:207215/140‑1
                          GGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGC                                                                                                                >  2:317616/1‑140
                          GGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGG                                                                                                                 <  2:810562/139‑1
                          GGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGG                                                                                                                 >  1:810562/1‑139
                                 CTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGT                                                                                                         <  2:1375403/140‑1
                                 CTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGT                                                                                                         >  2:707853/1‑140
                                 CTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGT                                                                                                         >  1:1289217/1‑140
                                 CTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGT                                                                                                         <  1:862264/140‑1
                                  TGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTG                                                                                                        <  2:288729/140‑1
                                       CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGT                                                                                                   <  2:1289217/140‑1
                                          AAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAG                                                                                                <  1:694742/140‑1
                                          AAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCT                                                                                                               >  1:6948/1‑125
                                          AAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCT                                                                                                               <  2:6948/125‑1
                                               GCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTT                                                                                           <  1:764186/140‑1
                                               GCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTT                                                                                           >  2:251318/1‑140
                                                  GTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGG                                                                                        <  1:1053679/140‑1
                                                  GTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGG                                                                                        <  1:906838/140‑1
                                                  GTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGG                                                                                        <  1:1425344/140‑1
                                                  GTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGG                                                                                        <  1:707853/140‑1
                                                  GTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGG                                                                                        <  1:1165302/140‑1
                                                   TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGT                                                                                       <  2:1253017/140‑1
                                                   TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGT                                                                                       >  2:108687/1‑140
                                                    CGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTA                                                                                      <  1:251318/140‑1
                                                    CGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTA                                                                                      <  2:467732/140‑1
                                                    CGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTA                                                                                      <  1:317616/140‑1
                                                                  GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGC                                                                        <  1:876254/140‑1
                                                                   TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTA                                                                                      <  2:862497/125‑1
                                                                   TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTA                                                                                      >  1:862497/1‑125
                                                                     GAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCG                                                                     <  2:791175/140‑1
                                                                           CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAA                                                               <  1:118128/140‑1
                                                                           CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAA                                                               >  1:393250/1‑140
                                                                            ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAAT                                                              <  2:517938/140‑1
                                                                                CAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGAT                                                          >  2:1425072/1‑140
                                                                                CAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGAT                                                          >  2:975624/1‑140
                                                                                  AAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCG                                                                       <  2:92813/125‑1
                                                                                  AAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCG                                                                       >  1:92813/1‑125
                                                                                   AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTA                                                       >  1:427036/1‑140
                                                                                   AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTA                                                       <  2:1322985/140‑1
                                                                                     TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAAC                                                     <  2:585453/140‑1
                                                                                       ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCC                                                   >  2:419618/1‑140
                                                                                                 ATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCA                                         <  2:350081/140‑1
                                                                                                     GAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACC                                     <  1:1317390/140‑1
                                                                                                       ACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCA                                   >  2:951625/1‑140
                                                                                                       ACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCA                                   <  1:709642/140‑1
                                                                                                       ACATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCA                                   <  2:393250/140‑1
                                                                                                         ATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAAT                                 <  1:975624/140‑1
                                                                                                         ATAAAACACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAAT                                 <  1:875163/140‑1
                                                                                                                ACTATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTC                          >  1:180399/1‑140
                                                                                                                  TATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCAT                        >  1:151134/1‑140
                                                                                                                  TATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAA                                  <  1:713516/130‑1
                                                                                                                  TATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAA                                  >  2:713516/1‑130
                                                                                                                   ATCAATAAGTTGGAGTCATTACCGCCCAATCGGGACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAA                                  <  1:249804/129‑1
                                                                                                                   ATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATT                       >  1:1259839/1‑140
                                                                                                                   ATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAAT                                 <  2:1285242/130‑1
                                                                                                                   ATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAAT                                 >  1:1285242/1‑130
                                                                                                                   ATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAA                                  >  2:434861/1‑129
                                                                                                                   ATCAATAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAA                                  <  1:434861/129‑1
                                                                                                                   ATCAATAAGTTGGAGTCATTACCACCCAATCGGGACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAA                                  >  2:249804/1‑129
                                                                                                                        TAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATC                  <  1:1425072/140‑1
                                                                                                                        TAAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATC                  <  1:535545/140‑1
                                                                                                                         AAGTTGGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATCA                 <  2:799252/140‑1
                                                                                                                              GGAGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATCAACGCC            >  2:450726/1‑140
                                                                                                                                AGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATGAACtcaaa          >  2:1241178/1‑135
                                                                                                                                AGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATCAACGCCAA          <  2:1259839/140‑1
                                                                                                                                AGTCATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATCAACGCCAA          >  1:1122714/1‑140
                                                                                                                                    ATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATCAACGCCAACATC      >  1:1258934/1‑140
                                                                                                                                    ATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATCAACGCCAA          >  2:689173/1‑136
                                                                                                                                    ATTACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATCAACGCCAA          <  1:689173/136‑1
                                                                                                                                      TACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATCAACGCCAACATCAC    >  2:684669/1‑140
                                                                                                                                      TACCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATCAACGCCAACATCAC    >  2:174331/1‑140
                                                                                                                                        CCGCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATCAACGCCAACATCACTC  <  1:479277/140‑1
                                                                                                                                                                                                                                                                                    
CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1978640‑1978503
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCAATCGGCACAATAATCTTCAAGGCTAATTGTGGGAGTGAGATCTTCGGTAATAATAAATGATGCGCGAGTTAATGGATTTAACCCTTTTTCGCCAAACCCAATGCCCTTCATTGTATCAACGCCAACATCACTC  >  NC_000913/3805562‑3805699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A