Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F60 I1 R1	14	81.1	2782598	99.0%	2754772	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,680,424	Δ1 bp	intergenic (+76/+20)	kdgK → / ← yhjJ	2‑dehydro‑3‑deoxygluconokinase/peptidase M16 family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,680,424	0	T	.	100.0%	363.5 / NA	83	intergenic (+76/+20)	kdgK/yhjJ	2‑dehydro‑3‑deoxygluconokinase/peptidase M16 family protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (55/28); total (55/28)

CCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAA  >  NC_000913/3680296‑3680554

ccGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCa                                                                                                                        >  2:882082/1‑140 (MQ=255)

ccGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCa                                                                                                                        <  2:853057/140‑1 (MQ=255)

ccGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCa                                                                                                                        <  1:232506/140‑1 (MQ=255)

ccGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCa                                                                                                                        <  2:320767/140‑1 (MQ=255)

     aTTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCa                                                                                                                        >  1:1128597/1‑135 (MQ=255)

     aTTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCa                                                                                                                        <  2:1128597/135‑1 (MQ=255)

     aTTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAgg                                                                                                                   >  2:1092349/1‑140 (MQ=255)

     aTTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAgg                                                                                                                   <  2:1107504/140‑1 (MQ=255)

             tCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACtg                                                                                                           <  1:1051644/140‑1 (MQ=255)

              cgcgGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACtgt                                                                                                          <  1:1092349/140‑1 (MQ=255)

                cggcgCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCa                                                                                                                        <  2:447950/124‑1 (MQ=255)

                cggcgCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCa                                                                                                                        >  1:447950/1‑124 (MQ=255)

                cggcgCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGc                                                                                                        >  1:574595/1‑140 (MQ=255)

                cggcgCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGc                                                                                                        >  1:1237820/1‑140 (MQ=255)

                 ggcgCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCa                                                                                                       <  1:676040/140‑1 (MQ=255)

                   cgcgATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACtgtg                                                                                                         >  2:876691/1‑136 (MQ=255)

                   cgcgATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACtgtg                                                                                                         <  1:876691/136‑1 (MQ=255)

                   cgcgATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAgg                                                                                                     >  2:431709/1‑140 (MQ=255)

                   cgcgATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAgg                                                                                                     <  1:1320795/140‑1 (MQ=255)

                     cgATTATCCCGCGTGAGGCGATTCCAGCGTAAACGCAGCATATGCAAAATGCTGGATAAAGAGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTg                                                                                                   >  1:480546/1‑140 (MQ=255)

                     cgATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTg                                                                                                   >  2:899015/1‑140 (MQ=255)

                          aTCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAata                                                                                              <  1:984017/140‑1 (MQ=255)

                                cgTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTc                                                                                        >  2:695675/1‑140 (MQ=255)

                                  tGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCAc                                                                                      >  2:203735/1‑140 (MQ=255)

                                  tGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCAc                                                                                      >  2:102529/1‑140 (MQ=255)

                                     ggCGATGCCAACGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTc                                                                                   <  2:635815/140‑1 (MQ=255)

                                         aTGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGa                                                                               <  1:1215886/140‑1 (MQ=255)

                                         aTGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGa                                                                               <  2:206152/140‑1 (MQ=255)

                                          tGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGAt                                                                              >  1:348715/1‑140 (MQ=255)

                                              aGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTAc                                                                          <  2:574595/140‑1 (MQ=255)

                                               gCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACg                                                                         <  1:61073/140‑1 (MQ=255)

                                                                     aGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAggtgg                                                   >  2:983284/1‑140 (MQ=255)

                                                                       gCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTc                                                 >  1:280507/1‑140 (MQ=255)

                                                                         tGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGc                                               >  1:445614/1‑140 (MQ=255)

                                                                          ggATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCa                                              >  1:566821/1‑140 (MQ=255)

                                                                           gATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAg                                             >  1:912531/1‑140 (MQ=255)

                                                                           gATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAg                                             >  1:928998/1‑140 (MQ=255)

                                                                           gATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAg                                             <  2:480546/140‑1 (MQ=255)

                                                                           gATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAg                                             >  1:583366/1‑140 (MQ=255)

                                                                           gATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAg                                             >  2:1054189/1‑140 (MQ=255)

                                                                           gATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAg                                             >  2:689054/1‑140 (MQ=255)

                                                                                aGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAgcggcg                                        >  1:943784/1‑140 (MQ=255)

                                                                                     tACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGa                                   >  2:1008140/1‑140 (MQ=255)

                                                                                     tACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGa                                   >  2:76580/1‑140 (MQ=255)

                                                                                          ctctATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATgggg                              >  2:728515/1‑140 (MQ=255)

                                                                                            ctATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGcc                            >  2:271257/1‑140 (MQ=255)

                                                                                            ctATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGcc                            <  1:899015/140‑1 (MQ=255)

                                                                                            ctATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGcc                            >  2:785790/1‑140 (MQ=255)

                                                                                            ctATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGcc                            >  1:1232789/1‑140 (MQ=255)

                                                                                            ctATCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGcc                            >  1:668036/1‑140 (MQ=255)

                                                                                              aTCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCAt                          <  1:76580/140‑1 (MQ=255)

                                                                                              aTCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AAATCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATTGGGCCAt                          >  1:554369/1‑140 (MQ=255)

                                                                                               tCCAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATg                         >  2:303998/1‑140 (MQ=255)

                                                                                                 cAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGcc                            <  1:609744/135‑1 (MQ=255)

                                                                                                 cAGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGcc                            >  2:609744/1‑135 (MQ=255)

                                                                                                  aGCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGAtt                      <  1:930100/140‑1 (MQ=255)

                                                                                                   gCTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGAttt                     >  1:253555/1‑140 (MQ=255)

                                                                                                    cTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGAtt                      >  2:195238/1‑138 (MQ=255)

                                                                                                    cTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGAtt                      <  1:195238/138‑1 (MQ=255)

                                                                                                    cTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTg                    >  1:666760/1‑140 (MQ=255)

                                                                                                    cTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTg                    <  2:927823/140‑1 (MQ=255)

                                                                                                    cTCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTg                    >  2:282516/1‑140 (MQ=255)

                                                                                                     tCATCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAAGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGa                   >  2:650870/1‑140 (MQ=255)

                                                                                                       aTCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGTAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGAtt                      >  2:23648/1‑135 (MQ=255)

                                                                                                       aTCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGTAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGAtt                      <  1:23648/135‑1 (MQ=255)

                                                                                                       aTCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGc                             >  2:400888/1‑128 (MQ=255)

                                                                                                       aTCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGc                             <  1:400888/128‑1 (MQ=255)

                                                                                                       aTCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATc                 >  1:450126/1‑140 (MQ=255)

                                                                                                       aTCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATc                 >  2:309240/1‑140 (MQ=255)

                                                                                                       aTCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATc                 >  1:959231/1‑140 (MQ=255)

                                                                                                       aTCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGAAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATc                 >  1:861590/1‑140 (MQ=255)

                                                                                                       aTCCATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGAGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATc                 >  1:870828/1‑140 (MQ=255)

                                                                                                         ccATAAATACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATccc               >  2:1211467/1‑140 (MQ=255)

                                                                                                             aaaTACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGAc           >  1:821089/1‑140 (MQ=255)

                                                                                                             aaaTACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGAc           >  2:1072200/1‑140 (MQ=255)

                                                                                                              aaTACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGAcc          >  2:931115/1‑140 (MQ=255)

                                                                                                              aaTACCTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGAcc          >  2:170370/1‑140 (MQ=255)

                                                                                                                   cTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTg     >  1:1110955/1‑140 (MQ=255)

                                                                                                                   cTGATGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTg     >  2:200092/1‑140 (MQ=255)

                                                                                                                      aTGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCCTGATTTGATCCCAGACCGCCTGCaa  >  2:1177371/1‑140 (MQ=255)

                                                                                                                      aTGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCaa  <  2:450126/140‑1 (MQ=255)

                                                                                                                      aTGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCaa  <  2:270187/140‑1 (MQ=255)

                                                                                                                      aTGGTTGTGC‑AACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCaa  >  2:1204799/1‑140 (MQ=255)

CCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAA  >  NC_000913/3680296‑3680554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A