Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F60 I1 R1 19 81.2 2769194 99.2% 2747040 139.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,440,251 A→C I322S (ATC→AGC)  ytfL ← putative inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,440,2510AC98.4% 240.5 / NA 64I322S (ATC→AGC) ytfLputative inner membrane protein
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base C (35/28);  total (35/29)
Fisher's exact test for biased strand distribution p-value = 4.53e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGATCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACAATCAGCGTGTTGCGAATTTGTACGCCGCTGTTCA  >  NC_000913/4440114‑4440386
                                                                                                                                         |                                                                                                                                       
gCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCGTGAACGTGGTCAGCACGTGATTGAGGGTGATGCTc                                                                                                                                       >  2:609478/1‑140 (MQ=255)
gCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTc                                                                                                                                       >  1:882534/1‑140 (MQ=255)
 cACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTcc                                                                                                                                      >  2:753079/1‑140 (MQ=255)
 cACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTcc                                                                                                                                      >  2:188557/1‑140 (MQ=255)
      gcATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCCTCAAGTAATTGAGGGTGATGCTCCccacc                                                                                                                                 >  1:528287/1‑140 (MQ=255)
       cATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGGCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCccacca                                                                                                                                <  1:900362/140‑1 (MQ=255)
        aTGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCccaccac                                                                                                                               <  1:1087163/140‑1 (MQ=255)
         tGACGTCGTCAATTGGGGTGCCTCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCccaccacc                                                                                                                              <  1:616584/140‑1 (MQ=255)
          gACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCccaccacca                                                                                                                             <  1:1314398/140‑1 (MQ=255)
            cgtcgtCAATTGGGGGGCCGCCTTCAATCGGCCATGACTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCACCACCACCAgc                                                                                                                           <  1:531740/140‑1 (MQ=255)
               cgtcAATTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGcgcg                                                                                                                        <  1:1227262/140‑1 (MQ=255)
               cgtcAATTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGcgcg                                                                                                                        >  1:17854/1‑140 (MQ=255)
                 tcAATTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTa                                                                                                                      <  2:1214137/140‑1 (MQ=255)
                 tcAATTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTa                                                                                                                      <  1:1071569/140‑1 (MQ=255)
                  cAATTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTAc                                                                                                                     >  2:818811/1‑140 (MQ=255)
                   aaTTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAACGCGTACt                                                                                                                    <  1:188557/140‑1 (MQ=255)
                          gTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTa                                                                                                                      <  1:714460/131‑1 (MQ=255)
                          gTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTa                                                                                                                      >  2:714460/1‑131 (MQ=255)
                             ccgccgTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGAt                                                                                                          >  1:1021426/1‑140 (MQ=255)
                             ccgccgTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGAt                                                                                                          >  2:40298/1‑140 (MQ=255)
                                  gTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACcg                                                                                                     >  2:1156484/1‑140 (MQ=255)
                                    cAATCAGCCATGAGTTCTCATCTCGCGCGCCAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACcgcg                                                                                                   <  1:381107/140‑1 (MQ=255)
                                    cAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACcgcg                                                                                                   <  2:1021426/140‑1 (MQ=255)
                                    cAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACcgcg                                                                                                   <  2:687127/140‑1 (MQ=255)
                                    cAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACcgcg                                                                                                   <  1:1156484/140‑1 (MQ=255)
                                    cAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACcgcg                                                                                                   <  1:818811/140‑1 (MQ=255)
                                                aGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCAAGATCCCCGCGAAGTCTTCACCt                                                                                       >  2:584323/1‑140 (MQ=255)
                                                  ttCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGc                                                                                     <  2:695322/140‑1 (MQ=255)
                                                  ttCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACAGCGAAGTCTTCACCTGc                                                                                     >  1:1169913/1‑140 (MQ=255)
                                                     tcatcaCGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGt                                                                                  >  2:1345464/1‑140 (MQ=255)
                                                       atcaCGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGttt                                                                                >  2:56466/1‑140 (MQ=255)
                                                         caCGGGCGACAATCTGCCCTTCCAGCCCCTGCCCGCCCACATCGCCCAGCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTa                                                                              <  2:579457/140‑1 (MQ=255)
                                                            gggCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTaaaa                                                                           >  2:32800/1‑140 (MQ=255)
                                                             ggCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAAc                                                                          <  1:805563/140‑1 (MQ=255)
                                                               cGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACtt                                                                        >  1:1231124/1‑140 (MQ=255)
                                                               cGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACtt                                                                        >  1:849006/1‑140 (MQ=255)
                                                               cGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACtt                                                                        >  1:1301471/1‑140 (MQ=255)
                                                                      cTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACg                                                                 <  1:1025245/140‑1 (MQ=255)
                                                                      cTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACg                                                                 >  1:902054/1‑140 (MQ=255)
                                                                       tGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGc                                                                <  1:32800/140‑1 (MQ=255)
                                                                              ccAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGaa                                                         >  1:1038313/1‑140 (MQ=255)
                                                                                 gCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTGACCTGCGATTTGAAAACTTTCAAACGCCTCTGAAAgg                                                      >  1:412978/1‑140 (MQ=255)
                                                                                 gCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAgg                                                      >  2:241684/1‑140 (MQ=255)
                                                                                  ccccTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAggg                                                     <  2:849006/140‑1 (MQ=255)
                                                                                   cccTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGt                                                    >  1:339397/1‑140 (MQ=255)
                                                                                      tGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTaa                                                 >  2:963183/1‑140 (MQ=255)
                                                                                        accgaccAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACg                                               >  1:861214/1‑140 (MQ=255)
                                                                                        accgaccAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACg                                               >  1:789756/1‑140 (MQ=255)
                                                                                        accgaccAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACg                                               >  2:1350622/1‑140 (MQ=255)
                                                                                           gaccAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGATTAACGTAt                                            <  1:56466/140‑1 (MQ=255)
                                                                                           gaccAGATCGCCCATCAACGTGTTCATCACGTCATTGAGCGTGATGCTTCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTAt                                            <  2:528287/140‑1 (MQ=255)
                                                                                               aGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCgg                                        <  2:762354/140‑1 (MQ=255)
                                                                                                gATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGc                                       <  1:40298/140‑1 (MQ=255)
                                                                                                  tCGCCCATCAGCGTGGTCATCATGTCATTGATGGTTATGATCCCCACCGCCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGcac                                     <  2:412978/140‑1 (MQ=255)
                                                                                                    gCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACaa                                   >  2:759246/1‑140 (MQ=255)
                                                                                                           aGCGTGGTCATCACGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACAATCAGCgt                            >  1:288588/1‑140 (MQ=255)
                                                                                                               tGGTCATCATGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACAATCAGCGTGTTg                        >  1:296163/1‑140 (MQ=255)
                                                                                                                 gTCATCACGTCATTGAGGGTGGTGCTCCCCACCACCAGCGCGGACTCTGTCATGATCACCGCGAAGTCTTCACCTGCTGTGTTAAAACTTTCCGACGCCGCTGAAAGGGTTAACGTATCCGGCGAAATCAGTGTGTTACg                      >  2:282339/1‑140 (MQ=255)
                                                                                                                    atcaCGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACAATCAGCGTGTTGCGAAt                   >  1:965952/1‑140 (MQ=255)
                                                                                                                    atcaCGTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACAATCAGCGTGTTGCGAAt                   >  1:244369/1‑140 (MQ=255)
                                                                                                                         gTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACAATCAGCGTGTTGCGAATTTGTa              <  1:759246/140‑1 (MQ=255)
                                                                                                                         gTCATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACAATCAGCGTGTTGCGAATTTGTa              <  2:902054/140‑1 (MQ=255)
                                                                                                                           cATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACAATCAGCgtg                           >  1:141470/1‑125 (MQ=255)
                                                                                                                           cATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACAATCAGCgtg                           <  2:141470/125‑1 (MQ=255)
                                                                                                                           cATTGAGGGTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACAATCAGCGTGTTGCGAATTTGTAcg            >  1:894142/1‑140 (MQ=255)
                                                                                                                                   gTGATGCTCCCCACCACCAGCGCGTTGTAGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAAGGCCTCTGAGAGGGTTATCGTATCCGGCACAATCAGCGTGTTGCGAATTTGTACGCCGCTGtt    <  1:282339/140‑1 (MQ=255)
                                                                                                                                   gTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACAATCAGCGTGTTGCGAATTTGTa              <  2:717047/130‑1 (MQ=255)
                                                                                                                                   gTGATGCTCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACAATCAGCGTGTTGCGAATTTGTa              >  1:717047/1‑130 (MQ=255)
                                                                                                                                     gatgctCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCAGCAGAATAAGCGTGTTACGAATTTGTACGCCGCTGTTCa  >  2:488267/1‑140 (MQ=255)
                                                                                                                                      atgctCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACAATCAGCGTGTTGCGAATTTGTa              <  2:1015554/127‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
GCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATGAGTTCTCATCACGGGCGACAATCTGCTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATTGAGGGTGATGATCCCCACCACCAGCGCGTACTCGTTCATGATCACCGCGAAGTCTTCACCTGCGGTTTTAAAACTTTCCAACGCCTCTGAAAGGGTTAACGTATCCGGCACAATCAGCGTGTTGCGAATTTGTACGCCGCTGTTCA  >  NC_000913/4440114‑4440386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A