Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A24 F60 I1 R1	17	198.2	6851676	99.0%	6783159	139.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,486,138	A→G	intergenic (‑187/‑80)	pepA ← / → lptF	aminopeptidase A/I/lipopolysaccharide transport system protein LptF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,486,138	0	A	G	100.0%	886.8 / NA	235	intergenic (‑187/‑80)	pepA/lptF	aminopeptidase A/I/lipopolysaccharide transport system protein LptF
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (124/111); total (124/111)

Only 100 of 242 total aligned reads displayed.

TTGCAAGCTTTCGTAACTCATGTCCGCTGTTGCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACT  >  NC_000913/4486001‑4486273

 tGCAAGCTTTCGTAACTCATGTCCGCTGTTGCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTc                                                                                                                                      >  1:287158/1‑140 (MQ=255)

  gCAAGCTTTCGTAACTCATGTCCGCCGTTCCGATGACCTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCa                                                                                                                                     <  1:928095/140‑1 (MQ=255)

   cAAGCTTTCGTAACTCATGTCCGCTGTTGCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCaa                                                                                                                                    >  1:3266002/1‑140 (MQ=255)

    aaGCTTTCGTAACTCATGTCCGCTGTTGCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCaaa                                                                                                                                   >  1:3308430/1‑139 (MQ=255)

    aaGCTTTCGTAACTCATGTCCGCTGTTGCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAag                                                                                                                                   >  1:2955311/1‑140 (MQ=255)

        tttCGTAACTCATGTCCGCTGTTGCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGaa                                                                                                                               >  2:2770666/1‑140 (MQ=255)

                 tCATGTCCGCTGTTGCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCaa                                                                                                                                    <  2:243354/126‑1 (MQ=255)

                    tGTCCGCTGTTGCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGttt                                                                                                                   <  2:2037802/140‑1 (MQ=255)

                    tGTCCGCTGTTGCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGttt                                                                                                                   >  2:3352459/1‑140 (MQ=255)

                    tGTCCGCTGTTGCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTAAAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGttt                                                                                                                   >  2:1250729/1‑140 (MQ=255)

                     gTCCGCTGTTGCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTa                                                                                                                  <  1:150509/140‑1 (MQ=255)

                     gTCCGCTGTTGCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTa                                                                                                                  <  2:432158/140‑1 (MQ=255)

                          cTGTTGCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCa                                                                                                             >  1:2123367/1‑140 (MQ=255)

                               gCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGaaa                                                                                                        >  2:2388183/1‑140 (MQ=255)

                               gCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGaaa                                                                                                        <  2:2674661/140‑1 (MQ=255)

                               gCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGaaa                                                                                                        <  1:2157650/140‑1 (MQ=255)

                               gCGATGACTTCGTGTGAATCTTAACATTATTACGGCACTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGaaa                                                                                                        <  1:1243701/140‑1 (MQ=255)

                                cGATGACTTCGTGTTGATCTTACCGATATTACGGCATCGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAAc                                                                                                       <  1:869771/140‑1 (MQ=255)

                                cGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAAc                                                                                                       <  1:532519/140‑1 (MQ=255)

                                cGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAAc                                                                                                       <  1:1971691/140‑1 (MQ=255)

                                cGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAAc                                                                                                       <  1:25877/140‑1 (MQ=255)

                                       ttCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTaa                                                                                                >  1:2426521/1‑140 (MQ=255)

                                              tAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTg                                                                                         <  2:517809/140‑1 (MQ=255)

                                                 tCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGTCATGAAACAGGCTAAAATCCTGCaa                                                                                      >  1:1522801/1‑140 (MQ=255)

                                                     aaCGTTATTACTGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTCGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCa                                                                                       <  2:2102349/135‑1 (MQ=255)

                                                           attaCGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGtt                                                                            >  1:2775352/1‑140 (MQ=255)

                                                           attaCGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGtt                                                                            >  1:1747902/1‑140 (MQ=255)

                                                           attaCGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCGAAAATCTTGCAAAAGACGAGtt                                                                            >  1:1172110/1‑140 (MQ=255)

                                                           attaCGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCAAGAAACAAGCTAAAATCCTGCAAAAGACGAGtt                                                                            >  2:2995185/1‑140 (MQ=255)

                                                            ttaCGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGttt                                                                           >  2:2416573/1‑140 (MQ=255)

                                                            ttaCGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGttt                                                                           >  1:820429/1‑140 (MQ=255)

                                                            ttaCGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGttt                                                                           >  2:3244821/1‑140 (MQ=255)

                                                            ttaCGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAACCCATGAAACAAGCTAAAATCCGGCAAAAGACGAGttt                                                                           >  1:1280072/1‑140 (MQ=255)

                                                             taCGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGtttt                                                                          >  2:2902355/1‑140 (MQ=255)

                                                               cGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTa                                                                        >  1:2103104/1‑140 (MQ=255)

                                                               cGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTa                                                                        <  1:3114445/140‑1 (MQ=255)

                                                                   aTTGGTACGGCAGAACAAAATCTGAGAAGTGAATCCGTTGAGTATAATTCTCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATTAATCAACATAAAATCCTGCAAAAGACGAGTTTTTACggg                                                                    <  2:2147396/140‑1 (MQ=255)

                                                                   aTTGGCACGTCAGAACACAATCGGAGAGGTGTATCTGTTGAGTATAATCATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACgag                                                                    <  2:1393955/140‑3 (MQ=255)

                                                                   aTTGGCACGTCAGAACAAAATCTGAGAGGTGGATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACggg                                                                    <  2:1570082/140‑1 (MQ=255)

                                                                   aTTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAGACAAGCTGAAAGCCAGCAAAATACGAGTTTTTACggg                                                                    >  1:1627516/1‑140 (MQ=255)

                                                                   aTTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACggg                                                                    <  2:3266002/140‑1 (MQ=255)

                                                                   aTTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACggg                                                                    <  1:389459/140‑1 (MQ=255)

                                                                   aTTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACggg                                                                    <  1:2401099/140‑1 (MQ=255)

                                                                    ttGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAGAACGAGTTCTTACGGGc                                                                   >  2:1535907/1‑140 (MQ=255)

                                                                    ttGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGc                                                                   >  2:194476/1‑140 (MQ=255)

                                                                           gTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTa                                                            <  2:1715577/140‑1 (MQ=255)

                                                                           gTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTa                                                            <  2:287158/140‑1 (MQ=255)

                                                                            tCAGAACAAAATCTGAGAGGTGAAGCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGACTAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTaa                                                           >  2:2298173/1‑140 (MQ=255)

                                                                             cAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTaaa                                                          <  1:2060539/140‑1 (MQ=255)

                                                                             cAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTaaa                                                          <  1:3054262/140‑1 (MQ=255)

                                                                              aGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAg                                                         >  2:3063513/1‑140 (MQ=255)

                                                                                aaCAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACggg                                                                    >  2:848702/1‑127 (MQ=255)

                                                                                aaCAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACggg                                                                    <  1:848702/127‑1 (MQ=255)

                                                                                aaCAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTg                                                       >  2:1810698/1‑140 (MQ=255)

                                                                                aaCAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTg                                                       <  1:3352459/140‑1 (MQ=255)

                                                                                 aCAAAATCTGAGAGGTGAATCCGTTAAGTGTAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGa                                                      <  1:1351927/140‑1 (MQ=255)

                                                                                     aaTCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACggg                                                                    >  1:3241311/1‑122 (MQ=255)

                                                                                     aaTCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAAt                                                  <  2:308/140‑1 (MQ=255)

                                                                                     aaTCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCGAAAATCCTGCAAAAGAAGAGTTTTTTCGGGCGTATTTAAAGTGATAAt                                                  >  2:1351927/1‑140 (MQ=255)

                                                                                        cTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCAt                                               <  1:2676772/140‑1 (MQ=255)

                                                                                          gagaGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATaa                                             >  1:624127/1‑140 (MQ=255)

                                                                                          gagaGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATaa                                             <  1:1794638/140‑1 (MQ=255)

                                                                                               gTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGatat                                        <  2:730233/140‑1 (MQ=255)

                                                                                               gTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGATTTTACGAGCGAATATAAAGTCATAATCATAAGatat                                        >  1:1031011/1‑140 (MQ=255)

                                                                                                 gAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCt                                      >  1:2989430/1‑140 (MQ=255)

                                                                                                  aaTCCGTTGAGTATAGTTATCTCAGCGACCATTTCGATGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTg                                     <  1:966977/140‑1 (MQ=255)

                                                                                                  aaTCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTg                                     <  1:194476/140‑1 (MQ=255)

                                                                                                     ccGTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTg                                  >  2:2940302/1‑140 (MQ=255)

                                                                                                       gTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAATAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGCTAATCATAAGATATCTGGTTCg                                >  1:1615021/1‑140 (MQ=255)

                                                                                                       gTTGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCg                                >  2:827516/1‑140 (MQ=255)

                                                                                                         tGAGTATAATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCggg                              >  2:120700/1‑140 (MQ=255)

                                                                                                             tataATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGAc                          >  2:2976788/1‑140 (MQ=255)

                                                                                                               taATTATCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGgaga                           >  2:2361809/1‑137 (MQ=255)

                                                                                                                     tCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCaaaa                  >  1:729127/1‑140 (MQ=255)

                                                                                                                     tCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCaaaa                  >  2:3040314/1‑140 (MQ=255)

                                                                                                                     tCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCATATTTAAAGTGAGAATAATAAGATACCTGGTGCGGGAGACGCTCaaaa                  >  2:1493118/1‑140 (MQ=255)

                                                                                                                     tCTTAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCATATTTAAAATGAGACTCATAAGATAACTGGGGCGGGAGACGCTCaaaa                  >  2:1521595/1‑140 (MQ=255)

                                                                                                                       ttAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGc                >  1:3148563/1‑140 (MQ=255)

                                                                                                                       ttAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGc                >  1:609816/1‑140 (MQ=255)

                                                                                                                       ttAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGc                >  2:2117191/1‑140 (MQ=255)

                                                                                                                       ttAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGc                >  2:2575672/1‑140 (MQ=255)

                                                                                                                       ttAGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGAGAATCATAAGATGTCCGGTGCGAGAGACGCTCAAAAGc                >  1:1061678/1‑140 (MQ=255)

                                                                                                                         aGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCa              >  2:109697/1‑140 (MQ=255)

                                                                                                                         aGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCa              >  1:3077336/1‑140 (MQ=255)

                                                                                                                         aGCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCa              <  1:2388183/140‑1 (MQ=255)

                                                                                                                         aGCGACGATTTCGACCGCTCAACAGTATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCa              <  1:1493118/140‑1 (MQ=255)

                                                                                                                          gCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAACGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAg             >  2:2796791/1‑140 (MQ=255)

                                                                                                                          gCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAg             >  1:2330976/1‑140 (MQ=255)

                                                                                                                          gCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAg             >  2:2680377/1‑140 (MQ=255)

                                                                                                                          gCGACGATTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAg             >  1:2361403/1‑140 (MQ=255)

                                                                                                                           cgacgaTTTCGACGGCTCAAGAAAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGc            <  1:1550678/140‑1 (MQ=255)

                                                                                                                              cgaTTTCGTCGGCTCAAGAGAATAAATGACGTTTACGCCCTGAAACAATCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTgg         <  2:1624945/140‑1 (MQ=255)

                                                                                                                                aTTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCg       >  2:3167614/1‑140 (MQ=255)

                                                                                                                                aTTTCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCg       >  2:2210651/1‑140 (MQ=255)

                                                                                                                                 tttCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGa      <  2:2018844/140‑1 (MQ=255)

                                                                                                                                 tttCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGa      <  2:624127/140‑1 (MQ=255)

                                                                                                                                 tttCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGa      <  1:2740984/140‑1 (MQ=255)

                                                                                                                                 tttCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCAAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGa      >  1:2286140/1‑140 (MQ=255)

                                                                                                                                  ttCGACGGCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGAt     <  2:3148563/140‑1 (MQ=255)

                                                                                                                                    cgacggCTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATAc   <  1:2020103/140‑1 (MQ=255)

TTGCAAGCTTTCGTAACTCATGTCCGCTGTTGCGATGACTTCGTGTTAATCTTAACGTTATTACGGCATTGGCACGTCAGAACAAAATCTGAGAGGTGAATCCGTTGAGTATAATTATCTTAGCGACGATTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACT  >  NC_000913/4486001‑4486273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A