Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F60 I1 R1	13	66.1	2245786	99.1%	2225573	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,220,545	T→G	L351R (CTG→CGG)	patA →	putrescine aminotransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,220,545	0	T	G	100.0%	268.0 / NA	69	L351R (CTG→CGG)	patA	putrescine aminotransferase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (26/43); total (26/43)

TGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGATGTTGATGGCGATTGAGTTTG  >  NC_000913/3220410‑3220679

tGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAg                                                                                                                                    <  2:1027210/140‑1 (MQ=255)

tGATGCCGATTGGCGCAACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAg                                                                                                                                    <  2:581224/140‑1 (MQ=255)

 gATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCACTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGc                                                                                                                                   <  1:781023/140‑1 (MQ=255)

  aTGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCa                                                                                                                                  >  1:809640/1‑140 (MQ=255)

  aTGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCa                                                                                                                                  >  2:1113972/1‑140 (MQ=255)

  aTGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCa                                                                                                                                  >  2:703945/1‑140 (MQ=255)

     ccGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGaa                                                                                                                               <  1:983788/140‑1 (MQ=255)

        aTTGGCGCGACCATCGCCACTGAAGAGGCGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACtt                                                                                                                            >  2:937230/1‑140 (MQ=255)

         ttGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGCCAACCCATTCCTGCATACCTCCTCCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACttc                                                                                                                           <  2:890344/140‑2 (MQ=255)

         ttGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTa                                                                                                                           <  1:887758/140‑1 (MQ=255)

         ttGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTa                                                                                                                           <  2:431143/140‑1 (MQ=255)

         ttGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTa                                                                                                                           <  2:668428/140‑1 (MQ=255)

         ttGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTa                                                                                                                           <  2:821795/140‑1 (MQ=255)

          tGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTAc                                                                                                                          >  2:1046667/1‑140 (MQ=255)

               cgACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCt                                                                                                                     <  1:581967/140‑1 (MQ=255)

               cgACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCt                                                                                                                     <  2:742585/140‑1 (MQ=255)

                 aCCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCa                                                                                                                   >  2:777933/1‑140 (MQ=255)

                             gAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCaaaa                                                                                                       <  2:638580/140‑1 (MQ=255)

                                    tgtTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGat                                                                                                <  2:504748/140‑1 (MQ=255)

                                     gtTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGata                                                                                               <  2:46111/140‑1 (MQ=255)

                                     gtTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGata                                                                                               <  2:306298/140‑1 (MQ=255)

                                        ttCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGt                                                                                            >  1:605055/1‑140 (MQ=255)

                                              tCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTgg                                                                                      <  2:809754/140‑1 (MQ=255)

                                                     gACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGttt                                                                               <  1:203881/140‑1 (MQ=255)

                                                          cccATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTc                                                                          >  1:207933/1‑140 (MQ=255)

                                                           ccATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCa                                                                         <  2:381690/140‑1 (MQ=255)

                                                            cATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCaa                                                                        <  1:1090118/140‑1 (MQ=255)

                                                               tCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTg                                                                     >  2:380226/1‑140 (MQ=255)

                                                                  tGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGgcg                                                                  <  2:809640/140‑1 (MQ=255)

                                                                    cATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGcgcg                                                                >  2:358934/1‑140 (MQ=255)

                                                                    cATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCACTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGcgcg                                                                >  1:529672/1‑140 (MQ=255)

                                                                     aTACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGTCGGTTTCCGTCAACTGGCGCgg                                                               >  1:543715/1‑140 (MQ=255)

                                                                     aTACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCgg                                                               >  1:496280/1‑140 (MQ=255)

                                                                            caccTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAA‑‑‑‑‑TGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGAt                                                   >  2:1084630/1‑140 (MQ=255)

                                                                             accTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATcc                                                       <  1:59293/140‑1 (MQ=255)

                                                                              ccTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATccc                                                      >  2:755712/1‑140 (MQ=255)

                                                                              ccTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTGGCTGGACAGTTGCCGTCAACTAGCGCGGGAATATccc                                                      >  1:65645/1‑140 (MQ=255)

                                                                               cTTTGGCGGCAACCCGCCGGCCCGTGCGGCGCCGCCGGCCACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCg                                                     <  2:65645/140‑1 (MQ=255)

                                                                                 ttGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGAt                                                   <  1:777933/140‑1 (MQ=255)

                                                                                 ttGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCAACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGAt                                                   >  1:736452/1‑140 (MQ=255)

                                                                                  tGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATc                                                  <  1:819159/140‑1 (MQ=255)

                                                                                   ggcggcAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCt                                                 >  2:753120/1‑140 (MQ=255)

                                                                                      ggcAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGACTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGt                                              >  2:486566/1‑140 (MQ=255)

                                                                                       gcAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTa                                             <  1:753120/140‑1 (MQ=255)

                                                                                         aaCCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACa                                           >  1:143056/1‑140 (MQ=255)

                                                                                          aCCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAg                                          >  2:49207/1‑140 (MQ=255)

                                                                                           cccGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAgg                                         <  1:1046667/140‑1 (MQ=255)

                                                                                           cccGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAgg                                         <  1:937230/140‑1 (MQ=255)

                                                                                              gCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAg                                      >  2:581117/1‑140 (MQ=255)

                                                                                                tGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAgcg                                    <  2:416852/140‑1 (MQ=255)

                                                                                                  gCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGcgcg                                  <  1:703945/140‑1 (MQ=255)

                                                                                                  gCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGcgcg                                  <  1:905331/140‑1 (MQ=255)

                                                                                                  gCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGcgcg                                  <  2:1032918/140‑1 (MQ=255)

                                                                                                  gCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGcgcg                                  <  2:142065/140‑1 (MQ=255)

                                                                                                  gCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGcgcg                                  <  2:280975/140‑1 (MQ=255)

                                                                                                  gCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGcgcg                                  <  1:598016/140‑1 (MQ=255)

                                                                                                  gCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGcgcg                                  <  2:307838/140‑1 (MQ=255)

                                                                                                     tgtgCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTgg                               >  1:540601/1‑140 (MQ=255)

                                                                                                       tgCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGTCGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTa                             <  2:543715/140‑1 (MQ=255)

                                                                                                       tgCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTa                             <  2:343253/140‑1 (MQ=255)

                                                                                                       tgCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTa                             >  2:208346/1‑140 (MQ=255)

                                                                                                       tgCGGCGGCGCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTa                             >  2:416016/1‑140 (MQ=255)

                                                                                                        gcggcggcgCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTaa                            <  1:208346/140‑1 (MQ=255)

                                                                                                         cggcggcgCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTaaa                           <  1:49207/140‑1 (MQ=255)

                                                                                                         cggcggcgCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTaaa                           <  1:1113972/140‑1 (MQ=255)

                                                                                                            cggcgCTGGCGACCATCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAggg                        <  1:358934/140‑1 (MQ=255)

                                                                                                                          aTCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGATGTTGATGGCGAt          >  1:691093/1‑140 (MQ=255)

                                                                                                                          aTCAATGTGTTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGATGTTGATGGCGAt          <  2:540601/140‑1 (MQ=255)

                                                                                                                                  gtTGCGGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGATGTTGATGGCGATTGAGTttg  <  2:960840/140‑1 (MQ=255)

TGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGATGTTGATGGCGATTGAGTTTG  >  NC_000913/3220410‑3220679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A