Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F60 I1 R1 13 66.1 2245786 99.1% 2225573 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,397,431 T→C D122G (GAT→GGT)  rng ← RNase G

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,397,4310TC100.0% 251.3 / NA 66D122G (GAT→GGT) rngRNase G
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (40/26);  total (40/26)

ACCCGCCCTGCTCGTCGCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATATCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACA  >  NC_000913/3397294‑3397561
                                                                                                                                         |                                                                                                                                  
aCCCGCCCTGCTCGTCGCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCg                                                                                                                                  >  1:969776/1‑140 (MQ=255)
     cccTGCTCGTCGCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCggtggt                                                                                                                             >  1:1047487/1‑140 (MQ=255)
     cccTGCTCGTCGCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCggtggt                                                                                                                             >  2:749766/1‑140 (MQ=255)
     cccTGCTCGTCGCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCggtggt                                                                                                                             >  1:915301/1‑140 (MQ=255)
     cccTGCTCGTCGCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCggtggc                                                                                                                             >  1:890393/1‑139 (MQ=255)
      ccTGCTCGTCGCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTc                                                                                                                            >  1:894284/1‑140 (MQ=255)
          cTCGTCGCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGgc                                                                                                                        >  1:48685/1‑140 (MQ=255)
           tcgtcgCAATACTCTACGACCACTTCTTTGAGGCGTTGACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGgcg                                                                                                                       <  1:96769/140‑1 (MQ=255)
            cgtcgCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGgcgc                                                                                                                      >  2:913997/1‑140 (MQ=255)
             gtcgCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGgcgcg                                                                                                                     <  1:1093285/140‑1 (MQ=255)
             gtcgCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGgcgcg                                                                                                                     <  1:603425/140‑1 (MQ=255)
             gtcgCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGgcgcg                                                                                                                     <  2:393449/140‑1 (MQ=255)
              tcgCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGgcgcgc                                                                                                                    <  2:375409/140‑1 (MQ=255)
               cgCAATCCTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCa                                                                                                                   <  1:911096/140‑1 (MQ=255)
               cgCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCa                                                                                                                   >  2:1059346/1‑140 (MQ=255)
                    tACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCttt                                                                                                              >  1:616766/1‑140 (MQ=255)
                         tGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGc                                                                                                         >  1:353524/1‑140 (MQ=255)
                         tGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGc                                                                                                         >  1:1076034/1‑140 (MQ=255)
                         tGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGc                                                                                                         >  1:804438/1‑140 (MQ=255)
                                aCTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCgg                                                                                                  >  1:987320/1‑140 (MQ=255)
                                       tCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCGCAACGTGAGAAGCCCCTGGGATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTc                                                                                           <  1:689352/140‑1 (MQ=255)
                                       tCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTc                                                                                           <  1:327145/140‑1 (MQ=255)
                                               tCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTg                                                                                   <  1:749766/140‑1 (MQ=255)
                                               tCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTg                                                                                   <  1:1059346/140‑1 (MQ=255)
                                               tCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTg                                                                                   <  2:857461/140‑1 (MQ=255)
                                                      cTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATc                                                                            <  1:256596/140‑1 (MQ=255)
                                                      cTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATc                                                                            <  1:913997/140‑1 (MQ=255)
                                                         aTTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGa                                                                         >  1:1087984/1‑140 (MQ=255)
                                                         aTTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGa                                                                         >  2:911525/1‑140 (MQ=255)
                                                         aTTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGa                                                                         >  2:425334/1‑140 (MQ=255)
                                                            cGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGGGCCAAGCAGATGTTCCACCACCTGCACCATCAGATCt                                                                      >  1:120167/1‑140 (MQ=255)
                                                              cTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTg                                                                    >  1:496906/1‑140 (MQ=255)
                                                                ttCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGcc                                                                  <  2:987320/140‑1 (MQ=255)
                                                                     tACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGa                                                             <  2:842491/140‑1 (MQ=255)
                                                                          tGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAAc                                                        <  1:906274/140‑1 (MQ=255)
                                                                          tGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAAc                                                        <  2:915301/140‑1 (MQ=255)
                                                                          tGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAAc                                                        <  2:48685/140‑1 (MQ=255)
                                                                           gggAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAAcc                                                       >  1:942885/1‑140 (MQ=255)
                                                                           gggAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAAcc                                                       >  1:962931/1‑140 (MQ=255)
                                                                           gggAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAAcc                                                       >  1:955334/1‑140 (MQ=255)
                                                                           gggAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAAcc                                                       >  1:329558/1‑140 (MQ=255)
                                                                           gggAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGCGATACCGGTGGCCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAAcc                                                       >  1:950795/1‑140 (MQ=255)
                                                                            ggAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCa                                                      <  2:1047487/140‑1 (MQ=255)
                                                                             gAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAg                                                     <  1:425334/140‑1 (MQ=255)
                                                                               aaCCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGtt                                                   >  2:442551/1‑140 (MQ=255)
                                                                                 ccccAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTcc                                                 >  1:465935/1‑140 (MQ=255)
                                                                                  cccAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCg                                                >  1:766529/1‑140 (MQ=255)
                                                                                    cAACGTGATAAGCCCCATGCATAAACACCAGATAGCGAGCAGGGAGCGGGATACCGGTGGTCAGGCGCGCACCCTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCgag                                              <  2:120167/140‑1 (MQ=255)
                                                                                            gaAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTcgcg                                      >  1:1019880/1‑140 (MQ=255)
                                                                                              aGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCa                                    <  2:804438/140‑1 (MQ=255)
                                                                                               gCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCAc                                   >  2:614988/1‑140 (MQ=255)
                                                                                                ccccTGGCATAAACACCTGATATCGAGAAGGGAGCGTGACACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCAcc                                  <  2:83131/140‑1 (MQ=255)
                                                                                                 cccTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCATGCCCCTTACGGACGAGTTCCGAGATGTCGCGCACCg                                 >  1:83131/1‑140 (MQ=255)
                                                                                                  ccTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCGt                                >  2:291179/1‑140 (MQ=255)
                                                                                                   cTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCgcg                               <  2:996482/140‑3 (MQ=255)
                                                                                                     ggCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCGTGaa                             >  2:1065143/1‑140 (MQ=255)
                                                                                                     ggCATAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCGTGaa                             <  2:969776/140‑1 (MQ=255)
                                                                                                         tAAACACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCGTGAATTGc                         >  1:365704/1‑140 (MQ=255)
                                                                                                           aaCACCAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCGTGAATTGCtt                       >  1:327780/1‑140 (MQ=255)
                                                                                                                cAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCa                                    >  2:44909/1‑122 (MQ=255)
                                                                                                                cAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCa                                    <  1:44909/122‑1 (MQ=255)
                                                                                                                cAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCGTGAATTGCTTTTGtt                  >  1:976711/1‑140 (MQ=255)
                                                                                                                cAGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCGTGAATTGCTTTTGtt                  >  1:269976/1‑140 (MQ=255)
                                                                                                                 aGATAGCGAGAAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCGTGAATTGCTTTTGttc                 >  1:598908/1‑140 (MQ=255)
                                                                                                                       ggagaAGGGAGCGTGATCCGGGTGGTCAGGCGCCCCCTTTTAGTGCCAAGCGGATCTTCCCCCACCTGCACCATCAGATCTTGCCCCTGACGACCCAGTCCCGAGATGTCGCGCCCCGTGAATTGTTTTTTTTCTTcccc           <  2:962931/139‑1 (MQ=255)
                                                                                                                        gagaAGGGAGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGTGCATCGTGAATTGATTTTGTTCTTCAccc          >  1:116977/1‑140 (MQ=255)
                                                                                                                                aGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCGTGAATTGCTTTTGTTCTTCACCCGCcacaca  >  1:1101250/1‑140 (MQ=255)
                                                                                                                                aGCGTGATACCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCGTGAATTGCTTTTGTTCTTCACCCGCcacaca  >  1:930026/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                  
ACCCGCCCTGCTCGTCGCAATACTCTGCGACCACTTTTTTCAGGCGTTCACGTTCTGATTCGCTTTCAATACGTTGGGAAACCCCAACGTGAGAAGCCCCTGGCATAAACACCAGATAGCGAGAAGGGAGCGTGATATCGGTGGTCAGGCGCGCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACA  >  NC_000913/3397294‑3397561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A