Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A25 F60 I1 R1	18	83.0	2855326	99.1%	2829628	139.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,623,645	C→A	P83T (CCA→ACA)	yhhH →	PF15631 family protein YhhH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,623,645	0	C	A	100.0%	646.9 / NA	184	P83T (CCA→ACA)	yhhH	PF15631 family protein YhhH
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (104/80); total (104/80)

Only 100 of 187 total aligned reads displayed.

AAAATAATGCGCAAGTATGAAAGTGAAGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAACCATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAAT  >  NC_000913/3623510‑3623780

aaaaTAATGCGCAAGTATGAAAGTGAAGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATa                                                                                                                                     <  2:845993/140‑1 (MQ=255)

 aaaTAATGCGCAAGTATGAAAGTGAAGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATAc                                                                                                                                    >  2:723465/1‑140 (MQ=255)

   ataatGCGCAAGTATGAAAGTGAAGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGa                                                                                                                                  >  1:1335978/1‑140 (MQ=255)

      atGCGCAAGTATGAAAGTGAAGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAGGAATCGTTATGGTCAGAATGCCGCAAAAGAAGAAAAAACATACGAAAt                                                                                                                               >  2:504035/1‑140 (MQ=255)

      atGCGCAAGTATGAAAGTGAAGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGAATGCCGCAAAAGACGAAAAAACATACGAAAt                                                                                                                               >  2:479402/1‑140 (MQ=255)

       tGCGCAAGTATGAAAGTGAAGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATc                                                                                                                              >  1:159601/1‑140 (MQ=255)

       tGCGCAAGTATGAAAGTGAAGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATc                                                                                                                              >  2:1360279/1‑140 (MQ=255)

         cgcAAGTATGAAAGTGAAGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCAc                                                                                                                            <  2:1221561/140‑1 (MQ=255)

          gcAAGTATGAAAGTGCAGGTAAATACACCTTTAGAAACTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACt                                                                                                                           <  1:506833/140‑1 (MQ=255)

          gcAAGTATGAAAGTGAAGGTAATTAGACCGTTAGAAAATTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACt                                                                                                                           <  1:563458/140‑1 (MQ=255)

          gcAAGTATGAAAGTGAAGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACt                                                                                                                           <  1:1360279/140‑1 (MQ=255)

          gcAAGTATGAAAGTGAAGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACt                                                                                                                           <  2:315894/140‑1 (MQ=255)

             aGTATGAAAGTGAAGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAg                                                                                                                        <  1:1410842/140‑1 (MQ=255)

                         aaGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATTTATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGt                                                                                                            >  1:894282/1‑140 (MQ=255)

                         aaGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAGGAAGAAAAAACATACGGAATCCCTGAGTTAACAACAAGt                                                                                                            >  2:477753/1‑140 (MQ=255)

                         aaGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGtt                                                                                                                      <  1:1313767/130‑1 (MQ=255)

                         aaGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTaacaa                                                                                                                 >  2:222325/1‑135 (MQ=255)

                         aaGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTaacaa                                                                                                                 <  1:222325/135‑1 (MQ=255)

                         aaGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGt                                                                                                            >  2:6759/1‑140 (MQ=255)

                             tAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTggg                                                                                                        <  2:1332415/140‑1 (MQ=255)

                             tAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTggg                                                                                                        <  2:224392/140‑1 (MQ=255)

                             tAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTggg                                                                                                        <  1:87410/140‑1 (MQ=255)

                             tAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTggg                                                                                                        <  1:789075/140‑1 (MQ=255)

                             tAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTggg                                                                                                        <  1:6759/140‑1 (MQ=255)

                             tAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTggg                                                                                                        <  1:752762/140‑1 (MQ=255)

                               aaTATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATTTATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGgtt                                                                                                      <  2:894282/140‑1 (MQ=255)

                               aaTATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCTGAAGAAGAAAAAACATCCGAAATCAATGAGTAAACAACAAGTTGGgtt                                                                                                      >  2:651030/1‑140 (MQ=255)

                               aaTATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGgtt                                                                                                      >  2:914606/1‑140 (MQ=255)

                                 tataCCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGgttgt                                                                                                    >  2:595191/1‑140 (MQ=255)

                                  ataCCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCGTAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGgttgtt                                                                                                   <  1:956036/140‑1 (MQ=255)

                                      cGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGa                                                                                                 <  2:157811/138‑1 (MQ=255)

                                      cGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGACTTCACAACAAGTTGGGTTGTTGAAg                                                                                               >  1:572016/1‑140 (MQ=255)

                                       gTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAgg                                                                                              >  1:924995/1‑140 (MQ=255)

                                       gTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAgg                                                                                              >  2:875921/1‑140 (MQ=255)

                                       gTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAgg                                                                                              >  1:286672/1‑140 (MQ=255)

                                        ttAGAAATTTGGTTAAAAATAAAGCTATAGCCTTGCAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGt                                                                                             <  2:589400/140‑1 (MQ=255)

                                         tAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTa                                                                                            >  1:797324/1‑140 (MQ=255)

                                           gAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTAcc                                                                                          >  1:202397/1‑140 (MQ=255)

                                           gAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTAcc                                                                                          >  1:1070172/1‑140 (MQ=255)

                                             aaTTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCAt                                                                                        <  2:1383967/140‑1 (MQ=255)

                                                  ggTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCAt                                                                                        <  1:1402509/135‑1 (MQ=255)

                                                            aaaGCTATAGCATTGCAATTAGTTGCGATGTATGTTAGGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAAt                                                                         <  1:477753/140‑1 (MQ=255)

                                                             aaGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAAtt                                                                        >  2:882045/1‑140 (MQ=255)

                                                              aGCTATAGCATTGGAGTTAGCTAAGATATGTGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTg                                                                       <  1:651030/140‑1 (MQ=255)

                                                                  ataGCATTGGAATTAGCTGAGATATCTGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCtgg                                                                   <  1:595191/140‑1 (MQ=255)

                                                                  ataGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCtgg                                                                   >  1:322499/1‑140 (MQ=255)

                                                                  ataGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCtgg                                                                   <  2:885922/140‑1 (MQ=255)

                                                                   taGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCtggt                                                                  <  1:723465/140‑1 (MQ=255)

                                                                   taGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCtggt                                                                  <  2:1115345/140‑1 (MQ=255)

                                                                   taGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCtggt                                                                  >  1:932159/1‑140 (MQ=255)

                                                                   taGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCtggt                                                                  <  1:882045/140‑1 (MQ=255)

                                                                   taGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCtggt                                                                  <  1:715395/140‑1 (MQ=255)

                                                                        ttGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTAAAGGTACTATTAACACAGACCTAATTGCTGGTGGGGt                                                             >  1:373417/1‑140 (MQ=255)

                                                                        ttGGAATTAGCTGAGATATATGTTAAGAAACGTTATGAACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGt                                                             <  1:521767/140‑1 (MQ=255)

                                                                        ttGGAATTAGCTGAGATATATGCTATGAATCGTTATGAACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGt                                                             <  1:410949/140‑1 (MQ=255)

                                                                                aGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCtggt                                                                  <  1:246501/127‑1 (MQ=255)

                                                                                aGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCtggt                                                                  >  2:246501/1‑127 (MQ=255)

                                                                                aGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTttatta                                                     >  2:56315/1‑140 (MQ=255)

                                                                                aGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTttatta                                                     >  2:193912/1‑140 (MQ=255)

                                                                                aGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTATTGAAGGTTCCAGTCAATCAGACCAAATTGATGGTGGGGTTTttatta                                                     >  2:430940/1‑140 (MQ=255)

                                                                                  cTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCAATCACTCATACCGAAGTGCTGGTGGGGTTTTTATtata                                                   >  1:405334/1‑140 (MQ=255)

                                                                                     agaTATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGaa                                                >  2:1302060/1‑140 (MQ=255)

                                                                                      gaTATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGaaa                                               >  1:1261410/1‑140 (MQ=255)

                                                                                         gtatGTTAAGAATCGTTATGGAAAGGATGCCGCAGAAGAGGAAAAAACCTACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAg                                            <  2:566229/139‑1 (MQ=255)

                                                                                          tatGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAgg                                           <  2:794616/140‑1 (MQ=255)

                                                                                            tGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCa                                         >  1:1319926/1‑140 (MQ=255)

                                                                                               tAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAGATTGCTGGTGGAGTGTTTATTATAGAAATAGGCaaaa                                      >  1:380608/1‑140 (MQ=255)

                                                                                               tAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCaaaa                                      <  2:1070172/140‑1 (MQ=255)

                                                                                                aaGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCaaaaa                                     >  1:1346960/1‑140 (MQ=255)

                                                                                                 aGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAat                                    >  1:737746/1‑140 (MQ=255)

                                                                                                 aGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAat                                    >  2:285586/1‑140 (MQ=255)

                                                                                                 aGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAat                                    >  1:1120655/1‑140 (MQ=255)

                                                                                                   aaTCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCa                                         >  1:776988/1‑133 (MQ=255)

                                                                                                   aaTCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCa                                         <  2:776988/133‑1 (MQ=255)

                                                                                                   aaTCGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAatga                                  <  2:932159/140‑1 (MQ=255)

                                                                                                      cGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTTGTGGGGTATTTATTATAGAAATAGGCAAAAATGATgg                               >  1:623132/1‑140 (MQ=255)

                                                                                                      cGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATgg                               >  1:97332/1‑140 (MQ=255)

                                                                                                      cGTTATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATgg                               >  1:116240/1‑140 (MQ=255)

                                                                                                        ttATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGga                             <  1:1094744/140‑1 (MQ=255)

                                                                                                        ttATGGACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGga                             >  2:134360/1‑140 (MQ=255)

                                                                                                             gACAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAAtt                        >  1:1242648/1‑140 (MQ=255)

                                                                                                               cAGGATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCt                      <  2:1251024/140‑1 (MQ=255)

                                                                                                                aGGATGCCGCAGAAGATGAAAAGACATACGAAATCGCTGGGTTAACAAAAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTg                     <  2:664945/140‑1 (MQ=255)

                                                                                                                 ggATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGa                    >  2:991064/1‑140 (MQ=255)

                                                                                                                  gATGCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGga                             <  2:1141332/130‑1 (MQ=255)

                                                                                                                     gCCGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAAttt                >  2:1325911/1‑140 (MQ=255)

                                                                                                                       cGCAGAAGAAGAAAAAACATACGGAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTg              >  2:69799/1‑140 (MQ=255)

                                                                                                                       cGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTg              >  2:1284298/1‑140 (MQ=255)

                                                                                                                       cGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTg              >  2:117279/1‑140 (MQ=255)

                                                                                                                       cGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTg              >  2:789651/1‑140 (MQ=255)

                                                                                                                       cGCAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTg              >  2:1127098/1‑140 (MQ=255)

                                                                                                                         cAGAAGAAGAAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGc            <  1:991064/140‑1 (MQ=255)

                                                                                                                          agaagaagaAAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTAGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGcc           >  1:919708/1‑140 (MQ=255)

                                                                                                                           gaagaagaaAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCa          <  2:1321983/140‑1 (MQ=255)

                                                                                                                           gaagaagaaAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCa          <  1:590226/140‑1 (MQ=255)

                                                                                                                            aagaagaaAAAACATCCGAAATGACTGAGTTAACAACTAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCAc         <  1:696564/140‑1 (MQ=255)

                                                                                                                            aagaagaaAAAACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCAc         >  2:733887/1‑140 (MQ=255)

                                                                                                                             agaagaaAAAACATACGCAATCTCTGAGTTATCAACAAGCTGGGTTGTCGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACg        <  2:380608/140‑1 (MQ=255)

                                                                                                                                   aaaaACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAAt  <  1:193912/140‑1 (MQ=255)

                                                                                                                                   aaaaACATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAAt  <  1:1302060/140‑1 (MQ=255)

AAAATAATGCGCAAGTATGAAAGTGAAGGTAAATATACCGTTAGAAATTTGGTTAAAAATAAAGCTATAGCATTGGAATTAGCTGAGATATATGTTAAGAATCGTTATGGACAGGATGCCGCAGAAGAAGAAAAACCATACGAAATCACTGAGTTAACAACAAGTTGGGTTGTTGAAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAAT  >  NC_000913/3623510‑3623780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A