Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A41 F60 I1 R1
|
13 |
41.9 |
1423038 |
99.2% |
1411653 |
138.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,426,821 |
A→C |
intergenic (‑38/+137) |
rrlD ← / ← alaU |
23S ribosomal RNA/tRNA‑Ala |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,426,821 | 0 | A | C | 100.0%
| 110.5
/ NA
| 40 | intergenic (‑38/+137) | rrlD/alaU | 23S ribosomal RNA/tRNA‑Ala |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (17/23); total (17/23) |
GCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACT > NC_000913/3426708‑3426950
|
gCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCg > 1:596977/1‑140 (MQ=11)
gCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCg < 1:533005/140‑1 (MQ=11)
gCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCg < 2:206585/140‑1 (MQ=11)
gCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCg < 2:596977/140‑1 (MQ=11)
cACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCaa > 2:484596/1‑140 (MQ=17)
ccTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAAtttt < 2:62924/139‑1 (MQ=18)
ccTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAAtttt > 1:62924/1‑139 (MQ=17)
ccTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTc > 2:543810/1‑140 (MQ=17)
ccTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTc > 2:685931/1‑140 (MQ=17)
cATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCt < 2:68486/140‑1 (MQ=18)
ccTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATc < 2:604443/140‑1 (MQ=18)
ctctGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCt > 2:494805/1‑134 (MQ=17)
ctctGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCt < 1:494805/134‑1 (MQ=18)
tctGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCa < 1:543810/140‑1 (MQ=18)
ccAGGGCCGCCACCGTGTAGGCTTAGTCGCTTAACCTCACAACCCGTAGACGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTCTCGCTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTa > 2:167489/1‑140 (MQ=11)
tCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCaa < 2:71652/140‑1 (MQ=18)
tCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCaa > 2:64237/1‑140 (MQ=17)
aCCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCa < 2:126999/136‑1 (MQ=18)
aCCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCa > 1:126999/1‑136 (MQ=17)
tgtACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCg > 1:478648/1‑140 (MQ=37)
aCGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAg > 1:299457/1‑140 (MQ=255)
gCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTg < 1:484596/140‑1 (MQ=255)
gCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTg > 1:16976/1‑140 (MQ=255)
cTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGa < 1:311860/140‑1 (MQ=255)
cGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAAcc > 2:428373/1‑137 (MQ=255)
cGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAAcc < 1:428373/137‑1 (MQ=255)
gCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTg < 2:478648/140‑1 (MQ=255)
tAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAg < 2:374046/140‑1 (MQ=255)
acaACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTg < 1:186403/122‑1 (MQ=255)
acaACCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTg > 2:186403/1‑122 (MQ=255)
aaCCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAAcc < 2:191619/124‑1 (MQ=255)
aaCCCGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAAcc > 1:191619/1‑124 (MQ=255)
cccGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTg < 2:262396/126‑1 (MQ=255)
cccGAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTg > 1:262396/1‑126 (MQ=255)
gAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTg > 2:412055/1‑123 (MQ=255)
gAAGATGTTTCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTg < 1:412055/123‑1 (MQ=255)
tttCACTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTAtttttt > 1:506680/1‑140 (MQ=255)
cTTCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTtttattta < 2:473004/140‑1 (MQ=25)
tCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAAt < 2:155658/140‑1 (MQ=18)
tCAGAGTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAAt < 1:685931/140‑1 (MQ=18)
agTTGCGAAACTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACt < 1:134934/140‑1 (MQ=11)
|
GCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACT > NC_000913/3426708‑3426950
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
