Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F60 I1 R1 11 97.9 3336762 99.1% 3306731 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,942,016 T→C noncoding (209/1542 nt) rrsC → 16S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,942,0160TC100.0% 296.5 / NA 130noncoding (209/1542 nt)rrsC16S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (69/61);  total (69/61)

Only 100 of 132 total aligned reads displayed.

GGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCC  >  NC_000913/3941882‑3942149
                                                                                                                                      |                                                                                                                                     
ggAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGc                                                                                                                                  <  1:918106/140‑1 (MQ=17)
   aaCAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCctc                                                                                                                               <  1:291925/140‑1 (MQ=18)
     cAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCtt                                                                                                                             >  1:1001423/1‑140 (MQ=17)
     cAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCtt                                                                                                                             <  1:1647295/140‑1 (MQ=18)
     cAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCtt                                                                                                                             <  1:1412448/140‑1 (MQ=18)
      aGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTg                                                                                                                            <  2:278776/140‑1 (MQ=17)
        cTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGcc                                                                                                                          <  1:220846/140‑1 (MQ=18)
          tGCTGTTTCGCTGACTAGTGGCTGATGGGTGAGTAATTTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCAt                                                                                                                        <  1:508539/140‑1 (MQ=11)
          tGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCAt                                                                                                                        <  2:1501235/140‑1 (MQ=18)
                ttCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCACCGGCCCTCTTGCCATCAGAtg                                                                                                                  >  2:725498/1‑140 (MQ=12)
                 tCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGAtgt                                                                                                                 >  2:1552262/1‑140 (MQ=18)
                    cTGACGAGTGGCGGATGGGTGAGTACTGTTTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGcc                                                                                                              <  1:693341/140‑1 (MQ=255)
                        cGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGa                                                                                                          <  1:104644/140‑1 (MQ=18)
                        cGAGTGGCGGACGGGAGAGTAACGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGa                                                                                                          <  1:517560/140‑1 (MQ=255)
                           gTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATgg                                                                                                       <  1:179104/140‑1 (MQ=17)
                              gCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGAt                                                                                                    <  2:1636727/140‑1 (MQ=17)
                              gCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGAt                                                                                                    <  2:989833/140‑1 (MQ=18)
                               cGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGAtt                                                                                                   <  2:1612941/140‑1 (MQ=18)
                                   cGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAggt                                                                                               >  1:154651/1‑138 (MQ=17)
                                      gTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCtagt                                                                                            >  1:1168406/1‑140 (MQ=17)
                                       tGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCtagta                                                                                           <  2:1495424/140‑1 (MQ=17)
                                         ggTAATGTCTGGGAAAAGGCCTGATGGAGGGAGATGACTACTGGAAACAGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAgg                                                                                         <  2:779197/139‑1 (MQ=11)
                                         aGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAgg                                                                                         <  1:929407/140‑1 (MQ=18)
                                         aGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACATCCGGGCCGCTTGCCATCAGATGTGACCAGTTGGGATTAGCTAGTAgg                                                                                         >  2:512083/1‑140 (MQ=11)
                                                  tGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAAc                                                                                >  1:1463054/1‑140 (MQ=17)
                                                     gAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGCATCAGCTAGCAGGTGGGGTAACGGc                                                                             >  1:779197/1‑140 (MQ=255)
                                                      aaaCTGCCTGATGGATGGGGATAACGACTGGAAACGGGAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCt                                                                            <  1:668561/140‑1 (MQ=255)
                                                      aaaCTGCCTGATGGAGGTGGATAACTACTGGCAACCGTATCTAATACCTCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCt                                                                            <  2:478775/140‑1 (MQ=11)
                                                         cTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCAc                                                                         >  2:1599412/1‑140 (MQ=17)
                                                          tGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCAcc                                                                        >  1:360387/1‑140 (MQ=17)
                                                          tGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGCGATTAGCTAGTAGATGGGGTAACGGCTCAcc                                                                        >  2:702424/1‑140 (MQ=12)
                                                            ccTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGt                                                                                   <  1:1242270/127‑1 (MQ=18)
                                                            ccTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTa                                                                      >  2:391365/1‑140 (MQ=17)
                                                             cTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAg                                                                     <  1:1599412/140‑1 (MQ=17)
                                                              tGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAgg                                                                    <  2:2010/140‑1 (MQ=17)
                                                              tGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAgg                                                                    <  2:1042689/140‑1 (MQ=17)
                                                                 tGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGcga                                                                 >  2:1202459/1‑140 (MQ=17)
                                                                 tGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGcga                                                                 <  1:841533/140‑1 (MQ=17)
                                                                 tGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGcga                                                                 <  2:1601136/140‑1 (MQ=17)
                                                                  ggAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGcgac                                                                <  1:391365/140‑1 (MQ=17)
                                                                      ggggATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATc                                                            >  1:1363643/1‑140 (MQ=17)
                                                                      ggggATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGCGTAACGGCTGACCTAGGCGACGATc                                                            >  1:693676/1‑140 (MQ=12)
                                                                      ggggATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATCAGCTAGTCGGTGGGGTTACGGATCACCTAGGCGACGATc                                                            >  2:586324/1‑140 (MQ=11)
                                                                           tAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTGGTATGTGCGGTAACGGATCACATAGGCGACGATCCCTAg                                                       >  2:484380/1‑140 (MQ=11)
                                                                            aaCTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGc                                                      <  1:1606947/140‑1 (MQ=17)
                                                                                actGGAAACGGTAGCTAATACCGCACAACTTCGCAAGTCCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGt                                                  <  1:783572/140‑1 (MQ=255)
                                                                                  tGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGTCGACGATCCCTAGCTGGTCt                                                >  1:986026/1‑140 (MQ=17)
                                                                                  tGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCt                                                >  1:5849/1‑140 (MQ=17)
                                                                                    gAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTga                                              <  1:1556611/140‑1 (MQ=17)
                                                                                    gAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGACGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTACCTAGTAGGTGGGGGAACGGCCCACCTAGACGACGCACCCTAGCTGGTCTga                                              >  1:708136/1‑140 (MQ=11)
                                                                                      aaCGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTgaga                                            <  1:1202459/140‑1 (MQ=17)
                                                                                        cGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAgg                                          <  1:1552262/140‑1 (MQ=17)
                                                                                         ggTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGa                                         >  1:1284062/1‑140 (MQ=17)
                                                                                             gCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGAc                                     >  2:91757/1‑140 (MQ=17)
                                                                                                aaTACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAg                                  >  2:985118/1‑140 (MQ=17)
                                                                                                 aTACCGCATAACGTCGCGAGACGAAAGAGGGCGACCTCCAGGCCTCTTACCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCCCCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGc                                 <  2:506468/140‑1 (MQ=11)
                                                                                                 aTACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGc                                 <  2:154651/140‑1 (MQ=17)
                                                                                                     cGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGAc                                     <  2:1379552/132‑1 (MQ=17)
                                                                                                     cGCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGAc                                     >  1:1379552/1‑132 (MQ=17)
                                                                                                      gCATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCacac                            >  2:1645572/1‑140 (MQ=17)
                                                                                                       cATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGTCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                           >  2:1572498/1‑140 (MQ=17)
                                                                                                       cATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGagag                                           >  2:112088/1‑124 (MQ=17)
                                                                                                       cATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGagag                                           <  1:112115/124‑1 (MQ=17)
                                                                                                       cATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGagag                                           <  1:112088/124‑1 (MQ=17)
                                                                                                       cATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGagag                                           >  2:112115/1‑124 (MQ=17)
                                                                                                       cATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGCGGATGACCAACCacacg                           >  1:1651065/1‑139 (MQ=12)
                                                                                                       cATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                           >  2:1219096/1‑140 (MQ=17)
                                                                                                       cATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                           >  1:1521484/1‑140 (MQ=17)
                                                                                                       cATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                           >  2:273320/1‑140 (MQ=17)
                                                                                                       cATAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                           >  1:1030416/1‑140 (MQ=17)
                                                                                                        aTAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTg                          >  2:1223386/1‑140 (MQ=17)
                                                                                                        aTAACGTCGCAAGACCAAAGAGGGGGACCTCCGAGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGGCGATCCCTTGCTGGTCAGAGACGATGACCACCCACACTg                          >  2:802413/1‑140 (MQ=11)
                                                                                                         tAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                           <  1:868885/138‑1 (MQ=17)
                                                                                                         tAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                           >  2:868885/1‑138 (MQ=17)
                                                                                                         tAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTgg                         <  2:1483933/140‑1 (MQ=17)
                                                                                                         tAACGTCGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCAACTAGGCGAAGATCCATCGCTGGTCTTAGAGCATGACCAGCCACACTgg                         >  2:812919/1‑140 (MQ=11)
                                                                                                               cGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGc                                 >  1:936651/1‑126 (MQ=17)
                                                                                                               cGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGc                                 <  2:936651/126‑1 (MQ=17)
                                                                                                               cGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCca                               <  1:1012673/128‑1 (MQ=17)
                                                                                                               cGCAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCca                               >  2:1012673/1‑128 (MQ=17)
                                                                                                                 cAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGGTGGTCTGAGAGGATGACCAGCGACACTGGAAcctgtc                 >  1:463416/1‑135 (MQ=11)
                                                                                                                 cAAGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACTAGCCACACTGGAACTgaga                 >  2:896176/1‑140 (MQ=12)
                                                                                                                  aggACCAAAGAGGGGGATCTCCTGGCCTCTTCCCATCAGCTGTGCCCATATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGac                <  2:444448/138‑1 (MQ=11)
                                                                                                                   aGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca               <  2:327115/140‑1 (MQ=17)
                                                                                                                   aGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca               <  1:1219096/140‑1 (MQ=17)
                                                                                                                   aGACCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca               <  1:985118/140‑1 (MQ=17)
                                                                                                                     aCCAAAGAGGGGGACTTCCGGGCCTCTTGTCATCAGACGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACg             <  1:812919/140‑1 (MQ=255)
                                                                                                                     aCCAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACg             <  1:1223386/140‑1 (MQ=17)
                                                                                                                       cAAAGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGt           >  1:223194/1‑140 (MQ=17)
                                                                                                                        aaaGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTc          <  2:13642/140‑1 (MQ=17)
                                                                                                                        aaaGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAGCCCTAGCTGGTCTGAGAGGATGACCAGCCACCCTGGAACTGAGACACGGTc          <  2:1521484/140‑1 (MQ=12)
                                                                                                                         aaGAGGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTcc         >  2:1180331/1‑140 (MQ=17)
                                                                                                                          agagGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCa        <  2:5849/140‑1 (MQ=17)
                                                                                                                            agGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCa        <  2:819336/138‑1 (MQ=17)
                                                                                                                            agGGGGACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGa      <  1:274339/140‑1 (MQ=17)
                                                                                                                             gggggACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGAc     <  2:1284062/140‑1 (MQ=17)
                                                                                                                               gggACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTc   >  2:351961/1‑140 (MQ=18)
                                                                                                                               gggACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGACGACCAGCGACAGTGGAACTGAGACACGGTCCAGAcct   >  1:444448/1‑138 (MQ=11)
                                                                                                                                ggACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTcc  >  1:841068/1‑140 (MQ=18)
                                                                                                                                 gACCTCCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGac                <  1:328277/125‑1 (MQ=17)
                                                                                                                                      |                                                                                                                                     
GGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCC  >  NC_000913/3941882‑3942149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A