Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F60 I1 R1 18 124.1 4246592 99.1% 4208372 139.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,944,115 A→G noncoding (412/2904 nt) rrlC → 23S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,944,1150AG97.3% 306.5 / ‑5.1 112noncoding (412/2904 nt)rrlC23S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base A (3/0);  new base G (62/47);  total (65/47)
Fisher's exact test for biased strand distribution p-value = 2.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 113 total aligned reads displayed.

CTGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGG  >  NC_000913/3943978‑3944198
                                                                                                                                         |                                                                                   
cTGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTGGATGAGTAGGGCTGGAACCGTGGTAACCTGGCTGAATATTGGGGGGcc                                                                                   >  2:1030948/1‑140 (MQ=11)
 tGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATATAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCa                                                                                  <  2:1919406/140‑1 (MQ=255)
 tGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCa                                                                                  <  1:1113293/140‑1 (MQ=37)
 tGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCa                                                                                  <  2:413149/140‑1 (MQ=37)
  gAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCAt                                                                                 >  1:1887987/1‑140 (MQ=38)
  gAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCAt                                                                                 >  2:1952950/1‑140 (MQ=38)
  gAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCAt                                                                                 >  2:1126544/1‑140 (MQ=38)
   aaTCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCAtc                                                                                >  2:1202069/1‑140 (MQ=37)
      cAGTATGTGTGTTAGTGTAAGCGTCTGGAAAAGCGCGCGCTACAGGGTCACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGTGACACGTGGTATCCTGTCTGAATATGGGGGGGCCAtcctc                                                                             <  2:703070/140‑1 (MQ=11)
       aGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCa                                                                                  <  2:1462838/134‑1 (MQ=37)
       aGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCa                                                                                  >  1:1462838/1‑134 (MQ=38)
       aGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCAtcctcc                                                                            >  1:1587489/1‑140 (MQ=38)
       aGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCAtcctcc                                                                            >  2:1804956/1‑140 (MQ=38)
       aGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCAtcctcc                                                                            >  2:1176652/1‑140 (MQ=37)
        gTATGTGTGTTAGTGGACGCGTGTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCa                                                                           <  2:933605/140‑1 (MQ=255)
        gTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCa                                                                           <  2:1739252/140‑1 (MQ=37)
         tATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCaa                                                                          >  2:201693/1‑140 (MQ=37)
         tATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCaa                                                                          >  2:1120496/1‑140 (MQ=37)
           tgtgtgTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAgg                                                                        <  2:30566/140‑1 (MQ=21)
             tgtgtTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCt                                                                      >  1:1916353/1‑140 (MQ=21)
             tgtgtTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCt                                                                      >  1:1427178/1‑140 (MQ=21)
               tgtTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAgg                                                                        <  1:1358548/136‑1 (MQ=21)
               tgtTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAgg                                                                        >  2:1358548/1‑136 (MQ=21)
               tgtTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTaa                                                                    <  1:1804956/140‑1 (MQ=21)
               tgtTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTaa                                                                    <  2:1587489/140‑1 (MQ=21)
               tgtTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTaa                                                                    <  1:1482501/140‑1 (MQ=21)
                 ttAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAAt                                                                  >  2:1351477/1‑140 (MQ=21)
                   aGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACATGTGGTATCCTGTATGACTATGGGGGGGCCATCCTCCAAGGCTAAATAc                                                                >  2:674660/1‑140 (MQ=255)
                   aGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATAc                                                                >  1:1047599/1‑140 (MQ=21)
                   aGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATAc                                                                >  2:1788702/1‑140 (MQ=21)
                   aGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATAc                                                                >  2:1508030/1‑140 (MQ=21)
                   aGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATAc                                                                >  1:84682/1‑140 (MQ=21)
                   aGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATAc                                                                <  1:201693/140‑1 (MQ=21)
                   aGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTAGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTaa                                                                    >  1:504181/1‑136 (MQ=21)
                   aGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTAGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTaa                                                                    <  2:504181/136‑1 (MQ=19)
                       gAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTGTGAGTATGGGGGGGCCATCCTGCAAGGCTAAATACTCct                                                            >  2:601179/1‑140 (MQ=255)
                       gAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTGTGAGTATAGGGGGGCCATCCTGCAAGGCTAAATACTCct                                                            >  2:541168/1‑140 (MQ=11)
                       gAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCct                                                            >  1:1189804/1‑140 (MQ=21)
                       gAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCct                                                            <  2:1616490/140‑1 (MQ=21)
                       gAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCct                                                            >  2:1497068/1‑140 (MQ=21)
                       gAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCct                                                            >  2:1350698/1‑140 (MQ=21)
                         aGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCctga                                                          >  2:369634/1‑140 (MQ=21)
                         aGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCctga                                                          <  1:1978801/140‑1 (MQ=21)
                         aGCGTCTGGAAAGGCCCGCGATACACGGTCACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCctga                                                          <  1:541168/140‑1 (MQ=255)
                          gCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCctgac                                                         >  1:207884/1‑140 (MQ=21)
                           cGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATCTGGGGGGGCCAGCCTCCAAGGATAAATACTCctgact                                                        >  1:647572/1‑140 (MQ=255)
                            gTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCATGTCTGAACATGAGGGGGCCATCCTTCAAGGCTAAATACTCctgactg                                                       >  2:662557/1‑140 (MQ=11)
                             tCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATAGGGGGGCTATCATCCAAGGCTGAATACTCctgactga                                                      >  1:893103/1‑140 (MQ=11)
                             tCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATAGGGGGGCCATCCTCCAAGGCTAAATACTCctgactga                                                      >  1:906116/1‑140 (MQ=21)
                             tCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCAGTCTGAATATGGGGGGACCATCCTCGAAGGCTAAATACTCctgactga                                                      >  2:696541/1‑140 (MQ=21)
                              cTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCtgactgac                                                     <  1:470296/140‑1 (MQ=21)
                               tGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGAcc                                                    <  2:1189804/140‑1 (MQ=21)
                                    aGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAg                                               <  2:1047599/140‑1 (MQ=21)
                                    aGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAg                                               <  1:1720516/140‑1 (MQ=21)
                                    aGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAg                                               <  1:1120496/140‑1 (MQ=21)
                                    aGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAg                                               <  1:1126544/140‑1 (MQ=21)
                                    aGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAg                                               <  1:861893/140‑1 (MQ=21)
                                      gcgcgcGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCCTCCTCCATGGCGAAGTACTCCAGACTGACCGATAGTg                                             >  1:977281/1‑140 (MQ=11)
                                      gcgcgcGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTg                                             <  2:1722690/140‑1 (MQ=21)
                                      gcgcgcGATACAGGGGGACAGCACCCTACTCAAAAATGCGCATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTg                                             <  1:951124/140‑1 (MQ=11)
                                       cgcgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGa                                            >  2:1787973/1‑140 (MQ=21)
                                         cgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAAc                                          <  1:1952950/140‑1 (MQ=21)
                                             aTACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGt                                      <  2:1902795/140‑1 (MQ=21)
                                             aTACAGGGTGACAGCACCGTACCCAAAAACGCACATAATGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGt                                      <  1:1030948/140‑1 (MQ=11)
                                                   ggTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTGTCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTg                                >  2:1260822/1‑140 (MQ=25)
                                                   ggTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTg                                >  1:1830510/1‑140 (MQ=37)
                                                       aCAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGGCACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAggg                            >  2:1247449/1‑140 (MQ=255)
                                                        cAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTCTCCTGTCTGAATATGGGGGGACCATCCTCCAAGACTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGa                           >  2:1872841/1‑140 (MQ=21)
                                                        cAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATAGTCCTGACTGACGGAGAGTGAATCAGTACCGTGAGGGa                           >  1:608524/1‑140 (MQ=11)
                                                        cAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGa                           >  2:433749/1‑140 (MQ=37)
                                                        cAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGa                           >  2:1940680/1‑140 (MQ=37)
                                                        cAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGa                           >  2:611507/1‑140 (MQ=37)
                                                        cAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGa                           <  1:1508030/140‑1 (MQ=21)
                                                        cAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGa                           >  1:2015291/1‑140 (MQ=25)
                                                         aGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGaa                          <  1:1787973/140‑1 (MQ=21)
                                                          gCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGaaa                         >  2:2106549/1‑140 (MQ=37)
                                                           ccccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGTCTAAATACCCCTGACTTACCGATAGGGAACCAGTACCGTGAGGGAAAg                        >  2:882885/1‑140 (MQ=11)
                                                             ccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGGACCAGTACCGTGAGGGAAAGGc                      >  1:782966/1‑140 (MQ=255)
                                                             ccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGc                      >  1:1446508/1‑140 (MQ=21)
                                                             ccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGc                      >  2:1567972/1‑140 (MQ=37)
                                                             ccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGc                      >  1:2050360/1‑140 (MQ=37)
                                                              cGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGCTAGAGACCCAGTAGCGTGAGGGAAAGGCg                     >  1:659918/1‑140 (MQ=11)
                                                               gTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAGATACTCCTGACTTACCTATAGTGAAGCAGTCCCGTGAGGGAAAGGCGa                    >  2:579953/1‑140 (MQ=11)
                                                                tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGaa                   >  1:1488972/1‑140 (MQ=37)
                                                                tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGaa                   <  1:1558244/140‑1 (MQ=21)
                                                                tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGCATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGaa                   >  2:1461742/1‑140 (MQ=21)
                                                                     aaaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGAACGAAAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGaa              >  2:858275/1‑140 (MQ=255)
                                                                       aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAcc            <  1:1238952/140‑1 (MQ=21)
                                                                       aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAcc            <  1:1351477/140‑1 (MQ=21)
                                                                       aaaTGCACATATTGTCAGCTCGTTGAGTAAGGCGGGAGACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAcc            <  1:680460/140‑1 (MQ=11)
                                                                          tGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCg         >  2:1122274/1‑140 (MQ=37)
                                                                          tGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCg         >  1:758450/1‑140 (MQ=37)
                                                                           gCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCgg        >  2:1477806/1‑140 (MQ=37)
                                                                            cacaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGc       >  1:1406071/1‑140 (MQ=25)
                                                                             acaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCg      <  1:1176652/140‑1 (MQ=21)
                                                                               atatTGTGAGCTCGACGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAg    <  1:611507/140‑1 (MQ=18)
                                                                                 atTGTGAGCTCGATGAGTAGGGTGGGACACGTGGTTTCCTGTCTGAATTTGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAggg  <  2:890770/140‑1 (MQ=255)
                                                                                 atTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGTTAGTGAACGAGTACCGCGAGGGAAAGGCGAAAAGAACCCCGGCGAggg  >  2:805817/1‑140 (MQ=255)
                                                                                 atTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAggg  <  1:860980/140‑1 (MQ=14)
                                                                                 atTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAggg  <  2:1427178/140‑1 (MQ=14)
                                                                                                                                         |                                                                                   
CTGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGG  >  NC_000913/3943978‑3944198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A