Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F60 I1 R1 18 148.4 5087586 98.9% 5031622 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,106,587 A→G I292V (ATC→GTC)  nupG → nucleoside:H(+) symporter NupG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,106,5870AG100.0% 517.8 / NA 138I292V (ATC→GTC) nupGnucleoside:H(+) symporter NupG
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (79/59);  total (79/59)

Only 100 of 148 total aligned reads displayed.

GCTTTATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGATCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCGAAAAAGAAGT  >  NC_000913/3106453‑3106723
                                                                                                                                      |                                                                                                                                         
       tgtgCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTg                                                                                                                               <  1:134639/140‑1 (MQ=255)
         tgCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTgcg                                                                                                                             >  2:275772/1‑140 (MQ=255)
           cagcaTGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCt                                                                                                                                       <  1:564277/128‑1 (MQ=255)
           cagcaTGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCt                                                                                                                                       >  2:564277/1‑128 (MQ=255)
            agcaTGCGTCAATCATCATGTCCATTTCGCAAATCGCTGAAACCCTGTCCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTg                                                                                                                          <  2:691400/140‑1 (MQ=255)
              caTGCGTCAATCATCCTGTCGATTTCGCATATCTCTGTAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGtt                                                                                                                        <  1:762505/140‑1 (MQ=255)
              caTGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAGCGTAATGAAGATAAGTATTGTGGCGAGGGTTCTGCGTTTTGCGCTGtt                                                                                                                        >  2:762505/1‑140 (MQ=255)
              caTGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGtt                                                                                                                        >  1:1900221/1‑140 (MQ=255)
              caTGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGtt                                                                                                                        >  2:2533636/1‑140 (MQ=255)
              caTGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGtt                                                                                                                        >  1:1825439/1‑140 (MQ=255)
              caTGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGtt                                                                                                                        >  1:1415699/1‑140 (MQ=255)
                tGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGTGCTGTTTg                                                                                                                      >  1:1655086/1‑140 (MQ=255)
                tGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTg                                                                                                                      >  1:1397365/1‑140 (MQ=255)
                tGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTg                                                                                                                      >  1:12810/1‑140 (MQ=255)
                       atcatcATGTCGATTTCCCAGATCTCTGAAACCCTCTTCCTTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACgg                                                                                                               <  2:734153/140‑1 (MQ=255)
                       atcatcATGTCGATTTCCCAGAACTCTGAAAACCTCTTCTTTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACgg                                                                                                               <  2:784966/140‑1 (MQ=255)
                        tcatcaTGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGGGGCGTGGGGCCGGCATTTTGCGCTGTTTGCTTACGGc                                                                                                              >  1:716154/1‑140 (MQ=255)
                          atcatGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGACCAGTATTGCGGCGTGGTTCCTGCGTGTTGCAATGTTTGGTTACGGCgc                                                                                                            >  2:1121467/1‑139 (MQ=255)
                            catGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGAcc                                                                                                          >  2:1852979/1‑140 (MQ=255)
                                 cactttCGTAGATCTCTTAGACCCTGTTCATTCTGACCAACCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGGTTTGCGCTGTTTGCTTACGGCGACCCGACt                                                                                                     <  2:1930209/137‑1 (MQ=255)
                                 cGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACt                                                                                                     <  2:2033507/140‑1 (MQ=255)
                                 cGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACt                                                                                                     <  2:2451304/140‑1 (MQ=255)
                                      tCGCGGATCTTTGAATCCCTGTTCATTCTAACCAACCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGGAATGATGATCGGTATTGGGGCGTGGGTCCTGCGTTTTGCGCTGTTTGGTTACGGCCACCCGACTCCGta                                                                                                <  2:2301391/140‑2 (MQ=255)
                                      tCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGtt                                                                                                <  1:1515508/140‑1 (MQ=255)
                                      tCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGtt                                                                                                <  2:18129/140‑1 (MQ=255)
                                      tCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGtt                                                                                                <  1:1808192/140‑1 (MQ=255)
                                         cAGATCTCTGAAACCCTGTTCACTCCGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCgg                                                                                             <  1:998257/140‑1 (MQ=255)
                                              ctctGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGgtactg                                                                                        <  2:365840/140‑1 (MQ=255)
                                               tctGAAACCCTATTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGgtactgt                                                                                       <  2:2469642/140‑1 (MQ=255)
                                                  gAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGGCTCCGTTCGgtactgtact                                                                                    <  2:2321479/140‑1 (MQ=255)
                                                      cccTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGGTTACGGCGACCGGAGTCCGTTAGGTACTGTActgct‑g                                                                               >  1:735227/1‑140 (MQ=255)
                                                      cccTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTActgct‑g                                                                               >  1:2405528/1‑140 (MQ=255)
                                                        cTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGgtactgt                                                                                       <  1:225017/131‑1 (MQ=255)
                                                        cTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGgtactgt                                                                                       >  2:225017/1‑131 (MQ=255)
                                                        cTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGt                                                                             >  1:397250/1‑140 (MQ=255)
                                                        cTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGCGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGt                                                                             >  2:1493044/1‑140 (MQ=255)
                                                         tGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTa                                                                            >  1:2017250/1‑140 (MQ=255)
                                                         tGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTa                                                                            >  1:85747/1‑140 (MQ=255)
                                                          gTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCg                                                                                              <  2:238977/122‑1 (MQ=255)
                                                          gTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCg                                                                                              <  2:1599659/122‑1 (MQ=255)
                                                          gTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCg                                                                                              >  1:238977/1‑122 (MQ=255)
                                                          gTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTAc                                                                           >  2:1636656/1‑140 (MQ=255)
                                                          gTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTAc                                                                           >  2:1921601/1‑140 (MQ=255)
                                                           ttCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACt                                                                          <  1:2533636/140‑1 (MQ=255)
                                                                 cTGACCATCCCGTTCTTATTAAACCGCTACGATGTTAAGTACGTAATGCTGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCgat                                                                    <  2:1243843/140‑1 (MQ=255)
                                                                   gACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCgatga                                                                  <  2:2405528/140‑1 (MQ=255)
                                                                   gACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCgatga                                                                  <  2:1397365/140‑1 (MQ=255)
                                                                   gACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCgatga                                                                  <  1:1493044/140‑1 (MQ=255)
                                                                   gACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCgatga                                                                  <  2:443332/140‑1 (MQ=255)
                                                                   gACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCgatga                                                                  <  1:1548422/140‑1 (MQ=255)
                                                                    aCCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCgatgat                                                                 >  2:50288/1‑140 (MQ=255)
                                                                     ccATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATc                                                                >  1:477966/1‑140 (MQ=255)
                                                                     ccATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTAAGGCGACCCGACTTCGTCCGGTACTGTACTGTT‑GGTACTGTCGATGATc                                                                >  2:832892/1‑140 (MQ=255)
                                                                        tCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGtt                                                             >  1:2344599/1‑140 (MQ=255)
                                                                        tCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGtt                                                             <  2:1825439/140‑1 (MQ=255)
                                                                         cccGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGttt                                                            >  2:112582/1‑140 (MQ=255)
                                                                         cccGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCATTCGGTAATGTGCTACT‑GGTAGTGTCGATGATCGttt                                                            >  1:1195472/1‑140 (MQ=255)
                                                                                ttcttAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTg                                                     <  1:1852979/140‑1 (MQ=255)
                                                                                ttcttAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTg                                                     >  2:363751/1‑140 (MQ=255)
                                                                                  cttAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTgcg                                                   <  1:2292729/140‑1 (MQ=255)
                                                                                  cttAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTgcg                                                   >  2:1711268/1‑140 (MQ=255)
                                                                                  cttAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACGGTACTGCC‑GGTTCTGTCGATGATCGTTTACGGTTgcg                                                   >  1:883775/1‑140 (MQ=255)
                                                                                      aGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCAtt                                               >  1:631744/1‑140 (MQ=255)
                                                                                       gCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTc                                              <  1:1636656/140‑1 (MQ=255)
                                                                                       gCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTc                                              <  1:1921601/140‑1 (MQ=255)
                                                                                          gCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGTCCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGAc                                           <  2:2000628/140‑1 (MQ=255)
                                                                                          gCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGAc                                           <  2:93281/140‑1 (MQ=255)
                                                                                          gCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGAc                                           <  1:363751/140‑1 (MQ=255)
                                                                                          gCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGAc                                           <  1:50288/140‑1 (MQ=255)
                                                                                          gCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCA‑GGTACTGACGAAGATCGTTTAAGGTTGCGCATTCGAc                                           >  1:752156/1‑140 (MQ=255)
                                                                                            tACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGAct                                          <  1:2437033/139‑1 (MQ=255)
                                                                                                 tATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCa                                    <  1:112582/140‑1 (MQ=255)
                                                                                                  aTTAAGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCaa                                   >  2:395903/1‑140 (MQ=255)
                                                                                                   ttAAGAACGTAATGACGATCAGTATGGTGACGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAAc                                  <  1:698746/140‑1 (MQ=255)
                                                                                                      aGAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑AGTACTGTCGATGGTCGATTACGGTTGCGCAGTCGACTTCTTCAACAtc                               >  2:698746/1‑140 (MQ=255)
                                                                                                       gAACGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACAtct                              <  1:341956/140‑1 (MQ=255)
                                                                                                        aaCGTAATGATGATCCGTATTGTGGAGTGCGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACAtctc                             <  1:1121467/140‑1 (MQ=255)
                                                                                                        aaCGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTAGACTTCTTCAACAtctc                             >  2:2016592/1‑140 (MQ=255)
                                                                                                        aaCGTAATGATGATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTAAGGTTGCTCATTCGCCTTCTTCAACAtctc                             >  1:970008/1‑140 (MQ=255)
                                                                                                           gTAATGATGATCAGTATTGTGGCGTGGGTCCTGAGTTTTGCGCTGTTTGCTTACGGCGACCCAACTCCGTTCGGAACTGT‑CTTCTGGGTACTGTCGATGATCGTTTACGGTTGCGCATTGCCATTCTTCAACATCTCTgg                          >  2:2232333/1‑140 (MQ=255)
                                                                                                              atgatgATCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTc                       <  1:395903/140‑1 (MQ=255)
                                                                                                               tgatgaTCAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCg                      >  1:2044125/1‑140 (MQ=255)
                                                                                                                      cAGTATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTg               >  2:87314/1‑140 (MQ=255)
                                                                                                                         tATTGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCg            <  2:2044125/140‑1 (MQ=255)
                                                                                                                         tATTGTGGCGTGGGTCCCGCGTCTTGCGCTGATTGTTTACGGCGACCCCACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCg            <  2:655120/140‑1 (MQ=255)
                                                                                                                           ttGTGGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCCTTCGAATGCTTCAACAGCTCTGGTTCGGTGTTTGTCGaa          >  2:1141914/1‑140 (MQ=255)
                                                                                                                            tgtgGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCGaaa         >  1:1745991/1‑140 (MQ=255)
                                                                                                                             gtgCCGTGGGTCCTGCAGTTTGCGCTGTTTAATAACGGCAACCCGACTACGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCGaaaa        <  2:1231633/140‑1 (MQ=255)
                                                                                                                              tgGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCGACAGCTTTGGTTCGGTGTTTGTCGaaaaa       >  1:736177/1‑140 (MQ=255)
                                                                                                                              tgGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCGaaaaa       >  2:371401/1‑140 (MQ=255)
                                                                                                                              tgGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCGaaaaa       >  1:492444/1‑140 (MQ=255)
                                                                                                                              tgGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCGaaaaa       >  1:2348962/1‑140 (MQ=255)
                                                                                                                              tgGCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCGaaaaa       >  1:618563/1‑140 (MQ=255)
                                                                                                                              tgGCGTGGGTCCTCCGTTTTGCGCTGTTTGCTTACTGCGACCCGACTCCATTCGGTAGTGTACTGCT‑GGTAATGTCGACTATAGTTTACGGTTGCGCATTCAACTTCTTCAACATCTCTGGTTCGGTGTTTGACGaaaaa       <  2:2432280/140‑1 (MQ=255)
                                                                                                                                gCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCGAAAaaga     >  1:2472770/1‑140 (MQ=255)
                                                                                                                                gCGTGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCGAAAaaga     >  2:371038/1‑140 (MQ=255)
                                                                                                                                   tGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAATATCTCTGGTTCGGGGTTTGTCGAAAAACAAGt  >  2:519507/1‑140 (MQ=255)
                                                                                                                                   tGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCGaaaaa       <  2:1859395/135‑1 (MQ=255)
                                                                                                                                   tGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCGAAAAAGAAGt  >  2:1335085/1‑140 (MQ=255)
                                                                                                                                   tGGGTCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCGAAAAAGAAGt  >  1:1559189/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                         
GCTTTATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGATCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCT‑GGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTTCAACATCTCTGGTTCGGTGTTTGTCGAAAAAGAAGT  >  NC_000913/3106453‑3106723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A