Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F60 I1 R1
|
15 |
109.5 |
3730058 |
99.1% |
3696487 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,208,866 |
Δ3 bp |
coding (843‑845/1464 nt) |
ttdT → |
L‑tartrate:succinate antiporter |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3208866 |
3208868 |
3 |
95 [0] |
[0] 97 |
ttdT |
L‑tartrate:succinate antiporter |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3208865 | 0 (0.000) | 95 (0.860) |
52/276 |
0.6 |
100% |
coding (842/1464 nt) |
ttdT |
L‑tartrate:succinate antiporter |
| ? | NC_000913 |
3208869 = |
0 (0.000) | coding (846/1464 nt) |
ttdT |
L‑tartrate:succinate antiporter |
GATK/CNVnator alignment
N/A
