Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F60 I1 R1 21 78.5 2686542 99.1% 2662363 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,371,493 A→C I361S (ATT→AGT)  nanT ← N‑acetylneuraminate:H(+) symporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,371,4930AC100.0% 337.7 / NA 90I361S (ATT→AGT) nanTN‑acetylneuraminate:H(+) symporter
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (51/39);  total (51/39)

AGCCCAGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCAATCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCAC  >  NC_000913/3371359‑3371629
                                                                                                                                      |                                                                                                                                        
aGCCCAGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAGCAGACCGGGCAGCCAGACGTTGGCGCCGCCACTCGCa                                                                                                                                     >  1:389156/1‑140 (MQ=255)
  cccAGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCaaa                                                                                                                                   <  2:1095925/140‑1 (MQ=255)
    cgggCCCGCTGCACGCTTGTCGTTATAGAAATAACCGCCTATCAGTTTAGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATa                                                                                                                                 <  2:389156/138‑1 (MQ=255)
    cAGGCCCGCTGCACGCTGTTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATa                                                                                                                                 <  1:1171102/140‑1 (MQ=255)
    cAGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATa                                                                                                                                 <  2:872846/140‑1 (MQ=255)
     aGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATAc                                                                                                                                >  1:1152971/1‑140 (MQ=255)
      ggCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATAcc                                                                                                                               >  1:234873/1‑140 (MQ=255)
      ggCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATAcc                                                                                                                               >  1:1242986/1‑140 (MQ=255)
      ggCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAAAAGTAACAGGCCGAGAATACAGACGTCTGCGAGGCCACTCGCAAATAcc                                                                                                                               >  2:645840/1‑140 (MQ=255)
       gCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCa                                                                                                                                     >  2:757967/1‑133 (MQ=255)
       gCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCa                                                                                                                                     <  1:757967/133‑1 (MQ=255)
          ggtggcgcGCTGGCTGGTATGGAAATACCCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGaa                                                                                                                           <  1:101480/133‑1 (MQ=255)
          cGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGaa                                                                                                                           <  1:48618/140‑1 (MQ=255)
            cTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGaata                                                                                                                         >  2:937223/1‑140 (MQ=255)
            cTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGaata                                                                                                                         >  2:873573/1‑140 (MQ=255)
            cTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGaata                                                                                                                         >  2:741370/1‑140 (MQ=255)
            cTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCAACCAGACGTTTGTGCTGCCACTAGCAAATACCGGaata                                                                                                                         >  1:559116/1‑140 (MQ=255)
                         ggTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCg                                                                                                            >  1:1279130/1‑140 (MQ=255)
                           tATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATGCCGGAATAATCAGCAGCTGCGAg                                                                                                          <  1:737593/140‑1 (MQ=255)
                              cGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGcc                                                                                                       >  1:1256013/1‑140 (MQ=255)
                                aaaTACCCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCcag                                                                                                     <  2:1256013/140‑1 (MQ=255)
                                aaaTAACCGCCAATCCGTTTTGCTATGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCcag                                                                                                     <  1:380416/140‑1 (MQ=255)
                                aaaTAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCcag                                                                                                     >  2:1337862/1‑140 (MQ=255)
                                aaaTAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCcag                                                                                                     >  2:124541/1‑140 (MQ=255)
                                aaaTAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCcag                                                                                                     >  1:705262/1‑140 (MQ=255)
                                 aaTAACCGCCAATCAGTTTTGGTAAGATCCCGGCGGTCCATTGTCCAACCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATAGCGGAATAATCAGCAGCTGCGAGGCcagc                                                                                                    <  2:555820/140‑1 (MQ=255)
                                     aCCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCTGAATAATCAGCAGCTGCGAGGCCAGCAGGc                                                                                                >  2:1169508/1‑140 (MQ=255)
                                     aCCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGc                                                                                                >  1:747594/1‑140 (MQ=255)
                                     aCCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGc                                                                                                >  2:1337451/1‑140 (MQ=255)
                                     aCCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGc                                                                                                >  2:1241566/1‑140 (MQ=255)
                                     aCCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGc                                                                                                >  1:927659/1‑140 (MQ=255)
                                     aCCGCCAATCAGCTTTGGGAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAAGAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGc                                                                                                >  2:323426/1‑140 (MQ=255)
                                       cGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCGCCCAGCCGTGTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTa                                                                                              <  2:1032078/140‑1 (MQ=255)
                                       cGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTa                                                                                              <  1:754238/140‑1 (MQ=255)
                                       cGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTa                                                                                              <  1:1337451/140‑1 (MQ=255)
                                       cGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTa                                                                                              <  1:1241566/140‑1 (MQ=255)
                                        gCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTAc                                                                                             >  1:1310497/1‑140 (MQ=255)
                                             ccAGTTTTGGTAAATGCCCGGCGATCCCTTGACCAACAATTTGATGAAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACg                                                                                        <  2:927659/139‑1 (MQ=255)
                                                       tAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGc                                                                              >  1:1179945/1‑140 (MQ=255)
                                                        aaGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCg                                                                             <  1:1150649/140‑1 (MQ=255)
                                                           aTCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCAAGCCGGCTACAAACGTACGCTTTGCGGGt                                                                          >  1:576804/1‑140 (MQ=255)
                                                            tCCCGGCGCTCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGtt                                                                         <  1:323426/140‑1 (MQ=255)
                                                              ccGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTcc                                                                       <  1:1041611/140‑1 (MQ=255)
                                                                   gATCCCTTGTCCAAGAATTTGCCGGAAGAACAGTACCAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCccagcc                                                                  <  2:1225293/140‑1 (MQ=255)
                                                                    aTCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTCCAATCGTACGCTTCGCGGGTTCccagcca                                                                 >  1:641622/1‑140 (MQ=255)
                                                                     tCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCccagccag                                                                >  2:690163/1‑140 (MQ=255)
                                                                     tCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCccagccag                                                                >  1:781719/1‑140 (MQ=255)
                                                                     tCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCccagccag                                                                >  2:964147/1‑140 (MQ=255)
                                                                     tCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCccagccag                                                                >  1:64086/1‑140 (MQ=255)
                                                                      cccTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGt                                                               >  1:1225293/1‑140 (MQ=255)
                                                                      cccTTGTCCAAGCATCTGCTGGTAGCACACTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGt                                                               <  1:351944/140‑1 (MQ=255)
                                                                       ccTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTc                                                              <  2:1279130/140‑1 (MQ=255)
                                                                              cAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCGAGCAGGCTCCAATCGTGCGCTTTGCGGGTTGCCAGCCAGTCACCGAgg                                                       >  2:351944/1‑140 (MQ=255)
                                                                                aGCATTTGCTGGAAGCACAGTACCATACCGAGCACCCTGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGaa                                                     <  1:645840/140‑1 (MQ=255)
                                                                                aGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAGCGTACGCATTGCGGATTCCCAACCAGTCACCGAGGaa                                                     >  1:424056/1‑140 (MQ=255)
                                                                                 gCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAg                                                    >  1:1319943/1‑140 (MQ=255)
                                                                                 gCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAg                                                    <  1:741370/140‑1 (MQ=255)
                                                                                   aTTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGcc                                                  <  1:937223/140‑1 (MQ=255)
                                                                                   aTTTGCTGGAAGAACACAAACACACCGAGCACCAAGACGCTTGCGCCGACACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGcc                                                  <  2:641622/140‑1 (MQ=255)
                                                                                      tGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCAcc                                               >  2:1240276/1‑140 (MQ=255)
                                                                                      tGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCAcc                                               >  2:1044782/1‑140 (MQ=255)
                                                                                            aagaaCAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACgca                                         <  2:1179945/140‑1 (MQ=255)
                                                                                             agacaggTAACAGACTGAGCACGCATACGATTGCGCCCCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACgcag                                        <  1:620672/134‑1 (MQ=255)
                                                                                             agaaCAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACgcag                                        <  2:64086/140‑1 (MQ=255)
                                                                                                      aCAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCAcc                               >  2:11673/1‑140 (MQ=255)
                                                                                                       cAGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGACAGTCACCGAGAAAGCCACCTTCGCAGCATCCCAccg                              >  1:435971/1‑140 (MQ=255)
                                                                                                        aGACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCTGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCAccgc                             <  1:1169508/140‑1 (MQ=255)
                                                                                                         gACCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGGCAGTCCCCAAGGAAGCGACCTACGCAGCATCCCAccgcc                            >  2:645178/1‑140 (MQ=255)
                                                                                                          aCCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCAccgccg                           >  2:841472/1‑140 (MQ=255)
                                                                                                          aCCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCAccgccg                           >  1:1234729/1‑140 (MQ=255)
                                                                                                          aCCGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCAccgccg                           >  2:795047/1‑140 (MQ=255)
                                                                                                           ccGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACcgccgc                          >  2:863466/1‑140 (MQ=255)
                                                                                                            cGAGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCcgcg                         >  1:150070/1‑140 (MQ=255)
                                                                                                              aGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCGCAGCCAGTAACCGAGGAAGCCACCTGCGCAGCATCCCACCGCCGCGcc                       >  2:364828/1‑140 (MQ=255)
                                                                                                              aGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGcc                       >  2:894492/1‑140 (MQ=255)
                                                                                                              aGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGcc                       >  2:723974/1‑140 (MQ=255)
                                                                                                              aGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGcc                       >  1:788101/1‑140 (MQ=255)
                                                                                                              aGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGcc                       >  1:846614/1‑140 (MQ=255)
                                                                                                              aGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCACAGCCAGTTACCGACGAAGCCACCTCCGCAGGATCCCAccgcctgtct                       >  2:620672/1‑135 (MQ=255)
                                                                                                              aGCACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGGTCCCAGCCAGTCAACGAGGAACCCAACTTCGCAGCTTCCCACCGCCGCGcc                       >  1:600495/1‑140 (MQ=255)
                                                                                                                cACCCAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCaa                     <  2:1234729/140‑1 (MQ=255)
                                                                                                                   ccAGACGTTTGCGCCTCCACTCTCATATATCGGAATACTCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGc                  <  1:366774/140‑1 (MQ=255)
                                                                                                                   ccAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGc                  <  1:1044782/140‑1 (MQ=255)
                                                                                                                   ccAGACGTTTGCGCCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGc                  <  1:841472/140‑1 (MQ=255)
                                                                                                                        cGTTTGCGCCGCCACTCGCAAATACCGAAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTa             <  1:723974/140‑1 (MQ=255)
                                                                                                                             gcgcCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGATGAAGCCACGTACTCAGCATCCCACCACCGCGCCAAAGCCACTAAAGaa        >  2:366774/1‑140 (MQ=255)
                                                                                                                             gcgcCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCa                >  2:986724/1‑132 (MQ=255)
                                                                                                                             gcgcCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCa                <  1:986724/132‑1 (MQ=255)
                                                                                                                             gcgcCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCAc               >  2:1118107/1‑133 (MQ=255)
                                                                                                                             gcgcCGCCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCAc               <  1:1118107/133‑1 (MQ=255)
                                                                                                                              cgccgcCACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTATGCAGCATACCACCGCCGCGCCAAAGCCACTAAAGAAc       >  1:605005/1‑140 (MQ=255)
                                                                                                                               gccgccACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTCCGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACa      <  2:747594/140‑1 (MQ=255)
                                                                                                                                 cgccACTCGCAAATACTGGAATAATCAGCAGCTCCCAGGACAGCAGGCCACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGc    <  2:605005/140‑1 (MQ=255)
                                                                                                                                   ccACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCCCCTACGCAGCACCCCTCCGCCGCGCCAAAGCCACTAAAGAACAGcac  <  1:863466/140‑1 (MQ=255)
                                                                                                                                   ccACTCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGcac  <  2:788101/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                        
AGCCCAGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCAATCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCAC  >  NC_000913/3371359‑3371629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A