Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F60 I1 R1
|
16 |
89.9 |
3066698 |
99.1% |
3039097 |
139.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,500,238 |
Δ4 bp |
coding (329‑332/1338 nt) |
frlA → |
fructoselysine/psicoselysine transporter |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3500238 |
3500241 |
4 |
77 [0] |
[0] 77 |
frlA |
fructoselysine/psicoselysine transporter |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3500237 | 0 (0.000) | 77 (0.860) |
47/272 |
0.5 |
100% |
coding (328/1338 nt) |
frlA |
fructoselysine/psicoselysine transporter |
| ? | NC_000913 |
3500242 = |
0 (0.000) | coding (333/1338 nt) |
frlA |
fructoselysine/psicoselysine transporter |
GATK/CNVnator alignment
N/A
