Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 120 97.0 3206026 99.3% 3183583 140.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,394,870 (G)5→6 coding (805/1548 nt) nnr → NAD(P)HX epimerase/NAD(P)HX dehydratase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,394,8651.G100.0% 220.5 / NA 58A267G (GCG→GGG) nnrNAD(P)HX epimerase/NAD(P)HX dehydratase
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (14/44);  total (14/44)

GTTGGCTGGCAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑GGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGATGGTGCATGAACTGACGATG  >  NC_000913/4394727‑4394998
                                                                                                                                           |                                                                                                                                      
gTTGGCTGGCAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCAcggc‑g                                                                                                                                       <  2:1341643/140‑1 (MQ=255)
 ttGGCTGGCAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCAcggc‑gg                                                                                                                                      >  2:1565296/1‑140 (MQ=255)
 ttGGCTGGCAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCAcggc‑gg                                                                                                                                      >  2:1289043/1‑140 (MQ=255)
   ggctggcAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑gggg                                                                                                                                    >  2:1204050/1‑140 (MQ=255)
   ggctggcAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑gggg                                                                                                                                    <  1:1401402/140‑1 (MQ=255)
    gctggcAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑ggggg                                                                                                                                   <  2:443481/140‑1 (MQ=255)
      tggcAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑ggggggg                                                                                                                                 >  1:1526305/1‑138 (MQ=255)
       ggcAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑ggggggct                                                                                                                                <  1:1426971/140‑4 (MQ=255)
        gcAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑ggggggcta                                                                                                                               >  2:77210/1‑136 (MQ=255)
           ggTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTc                                                                                                                             >  1:569519/1‑140 (MQ=255)
             tCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGt                                                                                                                           <  1:760997/140‑1 (MQ=255)
               aGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTAt                                                                                                                         <  1:1347538/140‑1 (MQ=255)
                  agaCGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACAGCGGGGGGCTATTCGTATGAc                                                                                                                      >  1:5530/1‑140 (MQ=255)
                     cGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACggg                                                                                                                   <  2:52468/140‑1 (MQ=255)
                       aaaaTTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACggggg                                                                                                                 <  2:257740/140‑1 (MQ=255)
                           ttCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTAGTACGGGGGGAgc                                                                                                             >  2:1334074/1‑140 (MQ=255)
                             cAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAgcgg                                                                                                           <  1:1216407/140‑1 (MQ=255)
                             cAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAgcgg                                                                                                           <  1:995544/140‑1 (MQ=255)
                              aGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGGTATTCGTATGACGGGGGGAgcggg                                                                                                          >  2:178362/1‑139 (MQ=255)
                               gCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAgcggc‑g                                                                                                        <  2:821595/140‑1 (MQ=255)
                                 ggTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCt                                                                                                      <  1:613809/140‑1 (MQ=255)
                                       cagcagAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCgtgc                                                                                                <  2:1171736/140‑1 (MQ=255)
                                        agcagAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCgtgct                                                                                               <  1:1325122/140‑1 (MQ=255)
                                            gatcaacTTTCTCTCTGGCTAAAACCGCGTCGCCCGTCTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCGCGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCgtgctggtg                                                                                           <  1:555762/137‑1 (MQ=255)
                                            gAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCgtgctggtg                                                                                           <  2:1389344/140‑1 (MQ=255)
                                            gAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCgtgctggtg                                                                                           <  1:613380/140‑1 (MQ=255)
                                            gAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCgtgctggtg                                                                                           <  1:1221316/140‑1 (MQ=255)
                                            gAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCgtgctggtg                                                                                           <  2:163515/140‑1 (MQ=255)
                                            gAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCgtgctggtg                                                                                           <  1:243542/140‑1 (MQ=255)
                                             aacaacTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGGTATTCGTATGGCGGGGGGAGCGGG‑GCCGCgggctggggg                                                                                          >  2:1562706/1‑137 (MQ=255)
                                                  cTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGGTGGTCGTTTTTCGGGGGGAGCGGC‑GCCTCGggctggtgctgggt                                                                                     >  2:1434183/1‑138 (MQ=255)
                                                   tttCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGttt                                                                                    <  2:413755/140‑1 (MQ=255)
                                                   tttCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGttt                                                                                    <  1:72135/140‑1 (MQ=255)
                                                   tttCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGttt                                                                                    <  2:1129409/140‑1 (MQ=255)
                                                   tttCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGttt                                                                                    <  2:1525314/140‑1 (MQ=255)
                                                    ttCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTa                                                                                   <  1:385540/140‑1 (MQ=255)
                                                     tctcACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGGGCTGGTTTAg                                                                                  >  1:1402795/1‑140 (MQ=255)
                                                      ctcACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGt                                                                                 <  1:1289043/140‑1 (MQ=255)
                                                      ctcACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGt                                                                                 <  2:575673/140‑1 (MQ=255)
                                                      ctcACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGt                                                                                 <  1:394356/140‑1 (MQ=255)
                                                        cACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGTTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTcc                                                                               <  2:1161632/140‑1 (MQ=255)
                                                        cACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTcc                                                                               <  2:396911/140‑1 (MQ=255)
                                                        cACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACAGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTcc                                                                               <  2:5530/140‑1 (MQ=255)
                                                            ggCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTTGTATGACGGGGGGAGCGGC‑GCTGCGGGCTGGGGCCGGGTTAGTCCGAgg                                                                           >  2:695815/1‑139 (MQ=255)
                                                                    ccGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGAccc                                                                   <  1:720562/140‑1 (MQ=255)
                                                                      gcgTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGc                                                                 <  1:733981/140‑1 (MQ=255)
                                                                       cgTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTCTTTGTATGACGGGGGGAGCGGCGGCGGCG‑GCTGGTGCGGGGTTAGTCCGAGTACTAAcccccc                                                                >  2:362075/1‑137 (MQ=255)
                                                                       cgTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGGAGCGGC‑GCTGCGTGCTGGGGGTGGGTTAGTCCGAGGACTGACCCGCa                                                                >  1:1145972/1‑140 (MQ=255)
                                                                       cgTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGGAGCGGC‑GCTGCGTGCTGGGGCTGGGTTAGTCCGAGGACTGACCCGcc                                                                >  1:539510/1‑139 (MQ=255)
                                                                       cgTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGGAGCGGC‑GCCGCGTGCTGGGGCTGGGTTAGTCCGAGGACTGACCCGcc                                                                >  1:408202/1‑139 (MQ=255)
                                                                         tCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGGTATTCGTATGAAGGGGGGAGCGGG‑GCCGCGGGCTGGGGGTGGGTTTGTCCGAGGACTGACCCGccgg                                                              >  2:1252715/1‑137 (MQ=255)
                                                                            cccGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGGTATTCGTATGACGGGGGGAGCGGC‑GCCGCGTGCTGGGGCTGGTTTAGTCCGAGTACTGACCCGCAGTGaa                                                           >  2:1281352/1‑140 (MQ=255)
                                                                                 cTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACAt                                                      <  1:77210/140‑1 (MQ=255)
                                                                                        tAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGcgccg                                               <  2:430038/140‑1 (MQ=255)
                                                                                             gCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCgctgct                                          <  2:333792/140‑1 (MQ=255)
                                                                                                   aCGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGc                                    <  1:695815/140‑1 (MQ=255)
                                                                                                   aCGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCCATTCGTATGACGGGGGGAGCGGC‑GCTGCGGGCTGGGGCTGGGTTAGTCCGAGTACTGACCCCCCGGGAAAAAATTGCGCCGctgctggccgc                                    >  2:250869/1‑135 (MQ=255)
                                                                                                    cGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCa                                   <  1:135968/140‑1 (MQ=255)
                                                                                                     gggCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCAc                                  <  2:1401365/140‑1 (MQ=255)
                                                                                                     gggCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCAc                                  <  2:85612/140‑1 (MQ=255)
                                                                                                     gggCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCAc                                  <  1:1559710/140‑1 (MQ=255)
                                                                                                     gggCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCAc                                  <  2:1526305/140‑1 (MQ=255)
                                                                                                                 aTTATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGa                      <  1:1518630/140‑1 (MQ=255)
                                                                                                                  ttATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGAt                     <  2:820972/140‑1 (MQ=255)
                                                                                                                  ttATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGAt                     <  1:178362/140‑1 (MQ=255)
                                                                                                                  ttATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGAt                     <  1:760759/140‑1 (MQ=255)
                                                                                                                  ttATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGAt                     <  1:1485946/140‑1 (MQ=255)
                                                                                                                  ttATCGGTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGAt                     <  1:87308/140‑1 (MQ=255)
                                                                                                                     tCGGTGGCGATCACGGCACGGCGGGGGGGCATTCGTATGAAGGGGGAAGGGGG‑GCTGCGTGCTGGGGCGGGGTTAATCCGAGTACTTACCCGCTGTGAGAACATTACGCCGCTGCTGACTTCACGGCCGGCAtttttggg                  >  2:929055/1‑134 (MQ=255)
                                                                                                                        gTGGCGATCACGGCACGGCGGGGGGGTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGGGCTGGTTTAGTGCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGGCTGCACGACCGGAATTGATGGTGCa               >  2:807567/1‑140 (MQ=255)
                                                                                                                        gTGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGGGCTGGTTTAGTCCGAGGACTGACCCCCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGGATTGATGGGGCa               >  1:1227492/1‑140 (MQ=255)
                                                                                                                         tGGCGATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGATGGTGCAt              <  1:1562706/140‑1 (MQ=255)
                                                                                                                             gATCACGGCACGGCGGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGATGGTGCATGAAc          <  2:561908/140‑1 (MQ=255)
                                                                                                                                 ccggcacggcgGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGATGGTGCATGAACTGAc      <  1:1389808/139‑1 (MQ=255)
                                                                                                                                     cacggcgGGGGGCTATTTGTATGACGGGGGGAGCGGC‑GCCGCGTGCTGGGGCTGGTTTAGTCCGAGGACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGGCTGCACGACCGGGATTGATGGGGCATGGACTGACGATg  >  2:850037/1‑140 (MQ=255)
                                                                                                                                     cacggcgGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGATGGTGCATGAACTGACGATg  <  1:1565296/140‑1 (MQ=255)
                                                                                                                                     cacggcgGGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGATGGTGCATGAACTGACGATg  <  1:1204050/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                      
GTTGGCTGGCAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑GGGGGCTATTCGTATGACGGGGGAAGCGGC‑GCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGATGGTGCATGAACTGACGATG  >  NC_000913/4394727‑4394998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A