Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 116 98.7 3298914 99.2% 3272522 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,565,901 A→G intergenic (‑51/+65) yjiM ← / ← yjiN putative dehydratase subunit/DUF445 domain‑containing protein YjiN

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,565,9010AG98.2% 200.5 / ‑4.4 56intergenic (‑51/+65)yjiM/yjiNputative dehydratase subunit/DUF445 domain‑containing protein YjiN
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (29/26);  total (30/26)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.57e-01

TTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCC  >  NC_000913/4565765‑4566037
                                                                                                                                        |                                                                                                                                        
ttGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCa                                                                                                                                       <  1:1396300/140‑1 (MQ=255)
 tGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCAt                                                                                                                                      <  1:795680/140‑1 (MQ=255)
  gagaTCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGGAGATCGGTGCCAAGAGACATGGTTTTCCTTCCCCGTACCACGGGGGGTAAATAAAAGAGGCCACATTATTGCCAtt                                                                                                                                     >  2:418012/1‑140 (MQ=255)
   agaTCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGTTCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTc                                                                                                                                    <  1:1040611/140‑1 (MQ=255)
     aTCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCtt                                                                                                                                  <  2:1348584/140‑1 (MQ=255)
         aTGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAg                                                                                                                              <  1:125317/140‑1 (MQ=255)
         aTGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGGAGATCGGGGGCAAGGGACATGATTTTTCTTTCCCCTACCCCCGGGGATAATGAAAAAAGGCCACATTATTGCCATtttttttt                                                                                                                              >  2:1086725/1‑138 (MQ=255)
         aTGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGGAGATCGGGGACAAGTGACATGATTTTCCTTCCCCCCACCACGGGGGGGAAAGAAAAGAGGCCACATTATTGCCATTCtttttt                                                                                                                              >  2:295918/1‑138 (MQ=255)
          tGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGt                                                                                                                             <  2:629472/140‑1 (MQ=255)
           gACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTCCCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTa                                                                                                                            <  2:1490449/140‑1 (MQ=255)
           gACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTa                                                                                                                            <  1:47108/140‑1 (MQ=255)
             cGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATg                                                                                                                          <  2:369517/140‑1 (MQ=255)
              ggTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGGAGGTCCGGGGCAAGAGACAAGATTTTTCTTCCCCGGCCCCCGGGGGGAAATGAAAAGAGGGCCCATTATTGGCATTCTTTTTGTATgg                                                                                                                         >  2:1535107/1‑140 (MQ=255)
                tGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGTGTGGTTGGGGGCAAAAGACATGATTTTTCTTTCCCGCCCCACCGGGGGGAATGAAAAGAGGGCGCACTATTGCCATTCTTTTAGTATGGtt                                                                                                                       >  2:521093/1‑140 (MQ=255)
                        ccTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGAt                                                                                                               <  1:1208001/140‑1 (MQ=255)
                         cTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGGGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGGGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTTGTATGGTTTATTTGAtt                                                                                                              >  1:1536000/1‑139 (MQ=255)
                          tGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGGAGATCGGTGACAAGGGACATGATTTTTCCTCCCCCTACCACGGGAGATAATTAAAAAAGGCCACATTATTGCCCTTCTTTTAGTATGGTTTATTTGAtct                                                                                                             >  2:254197/1‑140 (MQ=255)
                              tGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGAtctctct                                                                                                         <  2:1047953/140‑1 (MQ=255)
                                gCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTcg                                                                                                       <  2:1193222/140‑1 (MQ=255)
                                       tCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAg                                                                                                <  2:1276388/140‑1 (MQ=255)
                                       tCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAg                                                                                                <  1:47150/140‑1 (MQ=255)
                                            gaACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACt                                                                                           <  1:118700/140‑1 (MQ=255)
                                            gaACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACt                                                                                           <  1:1000065/140‑1 (MQ=255)
                                               cTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAg                                                                                        <  1:392470/140‑1 (MQ=255)
                                               cTGATCGAAAATGGCGGGGAGATCGGGGACAAGGGACATGATTTTTCTTCCCCCTACCACGGGAGATAATGAAAAGAGGGCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAg                                                                                        >  1:33095/1‑140 (MQ=255)
                                                tGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGt                                                                                       <  1:1535107/140‑1 (MQ=255)
                                                  aTCGAAAATGGCGGGTAGATCGGTGACAAGGGACATGATTTTTCTTCCCCCTACCACGGGGGATAATGAAAAGAGGCCACATTATTGCCCTTCTTTTTGTATGGGTTTTTTTATCTCTCCCCCGGGTTGCCACTTAGgtt                                                                                     >  2:429539/1‑140 (MQ=255)
                                                          tGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGa                                                                             <  2:1590441/140‑1 (MQ=255)
                                                            gCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGGTAGCCACTTAGTTTTTCATGGAtt                                                                           >  1:631865/1‑140 (MQ=255)
                                                                         tGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGcc                                                              >  2:1638360/1‑140 (MQ=255)
                                                                              aGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAggg                                                         >  1:1365908/1‑140 (MQ=255)
                                                                              aGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTAGTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAggg                                                         <  2:1218130/140‑1 (MQ=255)
                                                                               gTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAgggg                                                        >  2:895831/1‑140 (MQ=255)
                                                                                tGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAggggg                                                       >  2:518320/1‑140 (MQ=255)
                                                                                   cATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAAc                                                    >  1:85832/1‑140 (MQ=255)
                                                                                   cATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAAc                                                    >  2:1470141/1‑140 (MQ=255)
                                                                                       aTTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAgg                                                >  2:101528/1‑140 (MQ=255)
                                                                                         tttCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGcc                                              >  1:197163/1‑140 (MQ=255)
                                                                                          ttccttccCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCg                                             <  1:521093/140‑1 (MQ=255)
                                                                                                 cccGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTg                                      >  1:151000/1‑140 (MQ=255)
                                                                                                 cccGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTg                                      >  2:395027/1‑140 (MQ=255)
                                                                                                     tACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTAGGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGAc                                  >  2:1328986/1‑140 (MQ=255)
                                                                                                       ccACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAg                                <  1:429539/140‑1 (MQ=255)
                                                                                                        cACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGc                               <  1:101528/140‑1 (MQ=255)
                                                                                                          cGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCaa                             >  2:1013578/1‑140 (MQ=255)
                                                                                                          cGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCaa                             >  1:543423/1‑140 (MQ=255)
                                                                                                          cGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCaa                             >  1:387699/1‑140 (MQ=255)
                                                                                                          cGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCaa                             >  2:874818/1‑140 (MQ=255)
                                                                                                          cGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCaa                             >  1:1427535/1‑140 (MQ=255)
                                                                                                             gagaTAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAata                          >  2:566351/1‑140 (MQ=255)
                                                                                                             gagaTAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAata                          <  1:294963/140‑1 (MQ=255)
                                                                                                             gagaTAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAata                          >  2:944495/1‑140 (MQ=255)
                                                                                                                aTAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATaa                       >  1:577932/1‑140 (MQ=255)
                                                                                                                  aaTGAAAAGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATaaaa                     >  2:1003882/1‑140 (MQ=255)
                                                                                                                      aaaaGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAg                 <  1:518320/140‑1 (MQ=255)
                                                                                                                       aaaGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGc                >  1:1084121/1‑140 (MQ=255)
                                                                                                                       aaaGAGGCCACATTATTACCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGc                >  1:1057573/1‑140 (MQ=255)
                                                                                                                        aaGAGGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGcc               <  1:895831/140‑1 (MQ=255)
                                                                                                                         agagGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGccc              >  1:1262178/1‑140 (MQ=255)
                                                                                                                          gagGCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCa             >  2:1028250/1‑140 (MQ=255)
                                                                                                                            ggCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAAt           >  1:1211065/1‑140 (MQ=255)
                                                                                                                             gCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATa          >  2:1463167/1‑140 (MQ=255)
                                                                                                                             gCCACATTATTGCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATa          >  2:957689/1‑140 (MQ=255)
                                                                                                                                   ttattgCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCg    <  1:1549437/140‑1 (MQ=255)
                                                                                                                                   ttattgCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCg    <  1:1470141/140‑1 (MQ=255)
                                                                                                                                     attgCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGcc  <  2:33095/140‑1 (MQ=255)
                                                                                                                                     attgCCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGcc  <  2:1040873/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
TTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCC  >  NC_000913/4565765‑4566037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A