Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F28 I1 R1
|
106 |
90.3 |
3060316 |
99.2% |
3035833 |
139.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,586,594 |
(G)6→7 |
coding (168/3513 nt) |
hsdR ← |
type I restriction enzyme EcoKI endonuclease component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,586,588 | 1 | . | G | 98.2%
| 405.7
/ ‑0.3
| 109 | coding (174/3513 nt) | hsdR | type I restriction enzyme EcoKI endonuclease component |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (64/43); total (66/43) |
| Fisher's exact test for biased strand distribution p-value = 5.18e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.54e-01 |
Only 100 of 131 total aligned reads displayed.
GGGCATCGTTGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑GGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATGGCATAAGTGAAGTCGTTG > NC_000913/4586449‑4586723
|
gggCATCGTTGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACa‑a < 1:500540/140‑1 (MQ=255)
gggCATCGTTGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACa‑a < 1:456689/140‑1 (MQ=255)
gCATCGTTGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑gg > 1:1242341/1‑140 (MQ=255)
aTCGTTGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑gggg < 2:879828/140‑1 (MQ=255)
tCGTTGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑ggggg < 2:1607/140‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑ggggggg < 1:936429/140‑2 (MQ=255)
gTTGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑ggggggg < 1:820756/140‑2 (MQ=255)
ttGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑ggggggga > 1:679507/1‑138 (MQ=255)
ttGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑ggggggga > 2:793549/1‑138 (MQ=255)
ttGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑ggggggga < 2:423372/140‑3 (MQ=255)
ttGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑ggggggga < 2:224853/140‑3 (MQ=255)
ttGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑ggggggga < 1:1391546/140‑3 (MQ=255)
ttGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑ggggggga < 2:541274/140‑3 (MQ=255)
ttGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑ggggggga < 2:58740/140‑3 (MQ=255)
gaTCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGtt < 1:845218/140‑1 (MQ=255)
gaTCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGtt < 2:161463/140‑1 (MQ=255)
gTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGt > 1:554560/1‑140 (MQ=255)
ttATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTa > 1:68108/1‑140 (MQ=255)
tATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTaa < 1:985225/140‑1 (MQ=255)
tATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTaa > 2:1492263/1‑140 (MQ=255)
gATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAg > 2:123455/1‑140 (MQ=255)
atTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGAcc > 2:441842/1‑140 (MQ=255)
ttCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCa > 1:1187896/1‑140 (MQ=255)
cGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑GGGGGGATGTTGAGTAACAGACCAAGa > 2:1191255/1‑140 (MQ=255)
gTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGa > 2:571015/1‑140 (MQ=255)
cACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGt > 1:52259/1‑140 (MQ=255)
ccGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGttt > 1:387119/1‑140 (MQ=255)
ccGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGttt > 2:1353462/1‑140 (MQ=255)
gCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCg > 1:626501/1‑140 (MQ=255)
gCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCg > 2:742818/1‑140 (MQ=255)
ccTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGc > 1:563969/1‑140 (MQ=255)
ccTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGc > 2:1322951/1‑140 (MQ=255)
ccTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGc > 2:1301926/1‑140 (MQ=255)
ccTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGc > 1:834189/1‑140 (MQ=255)
ccTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGc > 1:21733/1‑140 (MQ=255)
ccTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGc > 1:307702/1‑140 (MQ=255)
tGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCtg > 2:2548/1‑140 (MQ=255)
tACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGc < 2:1289708/140‑1 (MQ=255)
tACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGc < 2:535528/140‑1 (MQ=255)
aTGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTTATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGc < 2:1023465/140‑1 (MQ=255)
aTGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGc > 2:463309/1‑140 (MQ=255)
tGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGcc > 2:1481933/1‑140 (MQ=255)
tGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGcc > 1:1158279/1‑140 (MQ=255)
cggcgTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCaa > 1:1243914/1‑140 (MQ=255)
cggcgTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCaa > 2:1304509/1‑140 (MQ=255)
ggcgTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCaaa > 1:270348/1‑140 (MQ=255)
ggcgTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCaaa > 2:1077032/1‑140 (MQ=255)
ggcgTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCaaa < 1:1104114/140‑1 (MQ=255)
cgTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACa > 2:743110/1‑140 (MQ=255)
cgTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACa > 2:610732/1‑140 (MQ=255)
aCAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGGTGCTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCa > 2:185994/1‑140 (MQ=255)
aCAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCa < 2:1187896/140‑1 (MQ=255)
gagagGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGcg < 2:1401272/140‑1 (MQ=255)
gagagGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGcg < 2:694122/140‑1 (MQ=255)
gagagGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGcg < 2:368480/140‑1 (MQ=255)
gagagGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGcg < 2:113665/140‑1 (MQ=255)
gagagGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGcg < 1:1304509/140‑1 (MQ=255)
gagagGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGcg < 1:1329956/140‑1 (MQ=255)
gagagGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGcg < 1:1353462/140‑1 (MQ=255)
gagagGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGcg < 2:879149/140‑1 (MQ=255)
gagagGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGcg < 1:323291/140‑1 (MQ=255)
gagagGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGcg < 1:954284/140‑1 (MQ=255)
agagGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGcgt < 2:759094/140‑1 (MQ=255)
gagGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGcgtc < 2:1448390/140‑1 (MQ=255)
gagGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGcgtc < 1:743110/140‑1 (MQ=255)
tgtCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTggg > 2:56964/1‑140 (MQ=255)
gtCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACa‑a < 2:104366/58‑1 (MQ=255)
gtCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACa‑a > 1:104366/1‑58 (MQ=255)
tcatcaACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGat < 1:763082/140‑1 (MQ=255)
tcaACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGatcat > 1:1462713/1‑140 (MQ=255)
tcaACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGatcat < 1:1481933/140‑1 (MQ=255)
caaAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCgg > 2:1308158/1‑140 (MQ=255)
caaAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCgg > 2:1375636/1‑140 (MQ=255)
aaaGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCggg < 1:441842/140‑1 (MQ=255)
aGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACATG‑GGGGGGGAGTTGAGTAACAGACCAAGATGATTCGCTGCGGCTTCGCAAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTa > 2:1346818/1‑140 (MQ=255)
aGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTa > 2:284431/1‑140 (MQ=255)
gATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTa < 2:679507/140‑1 (MQ=255)
aTTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTAt > 2:1407827/1‑140 (MQ=255)
ccGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTccg < 1:571015/140‑1 (MQ=255)
ccGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTccg < 2:821908/140‑1 (MQ=255)
ttCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGca > 1:914748/1‑140 (MQ=255)
ttCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGca < 2:496737/140‑1 (MQ=255)
ttCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGca < 1:1193064/140‑1 (MQ=255)
ttCACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGca < 1:56964/140‑1 (MQ=255)
cACGCAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGcaca < 1:1492263/140‑1 (MQ=255)
cAGGAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCg < 2:270348/140‑1 (MQ=255)
ggAGATCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGAt > 2:77760/1‑140 (MQ=255)
gagaTCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATg > 2:453008/1‑140 (MQ=255)
agaTCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATgg > 1:300298/1‑140 (MQ=255)
gaTCGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATGGc < 2:307702/140‑1 (MQ=255)
cGTGTTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATGGCATa > 2:918262/1‑140 (MQ=255)
gtTGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATGGCATAAGt > 1:1263298/1‑140 (MQ=255)
ttGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATGGCATAAGTg < 2:1221710/140‑1 (MQ=255)
tGATTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATGGCATAAGTGa > 1:690684/1‑140 (MQ=255)
aTTCTCACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATGGCATAAGTGAAg > 2:1414321/1‑140 (MQ=255)
tctcACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATGGCATAAGTGAAGTc > 1:228103/1‑140 (MQ=255)
tctcACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATGGCATAAGTGAAGTc < 1:1077032/140‑1 (MQ=255)
ctcACA‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATGGCATAAGTGAAGTCg > 1:1081544/1‑140 (MQ=255)
caca‑AGGGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATGGCATAAGTGAAGTCGtt > 2:645071/1‑140 (MQ=255)
caca‑A‑GGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATGGCATAAGTGAAGTCGTTg > 1:736526/1‑140 (MQ=255)
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GGGCATCGTTGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAGAGAGGATGTTGTCATCAACAAAGGCGATTTTGCCGAGTTCACGCAGGAGATCGTGTTGATTCTCACA‑A‑GGGGGGATGTTGAGTAACAGACCAAGATGTTTCGCTGTGGCTTCGCCAAACATACGCATTTTAATCAGCGTCGTGTTGGGATCATCCGGGTAGTTATTTTCCGCCGCACAGGCGATGGCATAAGTGAAGTCGTTG > NC_000913/4586449‑4586723
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
