Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 162 93.0 3098984 99.0% 3067994 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,417,416 A→G I155M (ATA→ATG)  yjfP → carboxylesterase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,417,4160AG100.0% 314.4 / NA 84I155M (ATA→ATG) yjfPcarboxylesterase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (39/45);  total (39/45)

AGTCGGTGGCGCGTCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCTGTGGCATGGCCTCGACGATGACG  >  NC_000913/4417281‑4417546
                                                                                                                                       |                                                                                                                                  
aGTCGGTGGCGCGTCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTg                                                                                                                                >  2:1214727/1‑140 (MQ=255)
 gTCGGTGGCGCGTCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCCCCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGa                                                                                                                               <  2:275568/140‑1 (MQ=255)
 gTCGGTGGCGCGTCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGa                                                                                                                               <  1:127338/140‑1 (MQ=255)
  tCGGTGGCGCGTCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGaa                                                                                                                              >  2:563048/1‑140 (MQ=255)
         cgcgTCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGgcag                                                                                                                       <  2:970771/140‑1 (MQ=255)
         cgcgTCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGgcag                                                                                                                       <  1:6694/140‑1 (MQ=255)
          gcgTCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGgcagc                                                                                                                      <  2:437006/140‑1 (MQ=255)
           cgTCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGgcagca                                                                                                                     >  2:1491000/1‑140 (MQ=255)
           cgTCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCATTCACTGTTTCCACCGCTGATGCCTGAAACGgcagca                                                                                                                     <  1:1306082/140‑1 (MQ=255)
            gTCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGcagcac                                                                                                                    >  2:812883/1‑140 (MQ=255)
             tCGATGTGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGcagcaca                                                                                                                   <  2:1118663/140‑1 (MQ=255)
             tCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGcagcaca                                                                                                                   <  1:1191015/140‑1 (MQ=255)
             tCGATGGGCACGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGcagcaca                                                                                                                   <  2:232403/140‑1 (MQ=255)
                  gggCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAga                                                                                                              <  2:762907/140‑1 (MQ=255)
                     cgcgATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAgaatg                                                                                                           <  2:1439387/140‑1 (MQ=255)
                      gcgATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAgaatga                                                                                                          <  1:885285/140‑1 (MQ=255)
                       cgATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAgaatgaa                                                                                                         <  2:439472/140‑1 (MQ=255)
                              ggCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATa                                                                                                  >  2:1378617/1‑140 (MQ=255)
                                cACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAAc                                                                                                >  1:404935/1‑140 (MQ=255)
                                    ggggATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTg                                                                                            >  2:291916/1‑140 (MQ=255)
                                          tACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCgcgc                                                                                      <  1:536133/140‑1 (MQ=255)
                                          tACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCgcgc                                                                                      >  1:1029508/1‑140 (MQ=255)
                                          tACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCgcgc                                                                                      <  2:1494176/140‑1 (MQ=255)
                                            ccGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCa                                                                                    <  2:129340/140‑1 (MQ=255)
                                               cTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTg                                                                                 >  2:183655/1‑140 (MQ=255)
                                               cTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTg                                                                                 >  2:701980/1‑140 (MQ=255)
                                                tCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTgg                                                                                <  1:338529/140‑1 (MQ=255)
                                                 cGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGc                                                                               <  1:294395/140‑1 (MQ=255)
                                                 cGCCACCCCACGGGGAGTTGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCCCTGGc                                                                               <  2:1327919/140‑1 (MQ=255)
                                                     cccccACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCagag                                                                           <  2:1516575/139‑1 (MQ=255)
                                                       cccACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTg                                                                         >  2:654316/1‑140 (MQ=255)
                                                         cACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTggg                                                                       <  2:1207745/140‑1 (MQ=255)
                                                         cACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTggg                                                                       <  2:1198913/140‑1 (MQ=255)
                                                            ggTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAg                                                                    >  2:51200/1‑140 (MQ=255)
                                                                 gaTGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACa                                                               >  1:1546092/1‑140 (MQ=255)
                                                                    gTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAac                                                            >  1:1541885/1‑140 (MQ=255)
                                                                     tACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAacc                                                           >  1:1366415/1‑140 (MQ=255)
                                                                      aCCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAacca                                                          >  1:290927/1‑140 (MQ=255)
                                                                       ccGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAaccac                                                         >  1:665720/1‑140 (MQ=255)
                                                                        cGCCAGCATGATGGGATCGGGCTATTTTACATCCCTCGCCCGTTCCCTTTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAaccacc                                                        <  2:694183/140‑1 (MQ=255)
                                                                        cGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAaccacc                                                        <  1:472992/140‑1 (MQ=255)
                                                                          ccAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTg                                                      >  2:127510/1‑140 (MQ=255)
                                                                             gCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGaa                                                   <  2:126196/140‑1 (MQ=255)
                                                                              cATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGaac                                                  <  2:404935/140‑1 (MQ=255)
                                                                              cATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGaac                                                  <  2:290927/140‑1 (MQ=255)
                                                                                   tgGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACtt                                             <  2:337449/140‑1 (MQ=255)
                                                                                       aTCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTg                                         >  1:1306614/1‑140 (MQ=255)
                                                                                        tCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGa                                        >  2:994457/1‑140 (MQ=255)
                                                                                        tCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGa                                        >  2:80286/1‑140 (MQ=255)
                                                                                        tCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGa                                        <  2:275990/140‑1 (MQ=255)
                                                                                        tCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGa                                        <  1:654316/140‑1 (MQ=255)
                                                                                        tCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGa                                        >  2:1326790/1‑140 (MQ=255)
                                                                                        tCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGa                                        >  1:942417/1‑140 (MQ=255)
                                                                                         cGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGAc                                       <  1:1214727/140‑1 (MQ=255)
                                                                                          gggCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACa                                      <  1:833897/140‑1 (MQ=255)
                                                                                          gggCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACa                                      <  1:1378617/140‑1 (MQ=255)
                                                                                          gggCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACa                                      <  1:183655/140‑1 (MQ=255)
                                                                                           ggCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAg                                     >  1:1203479/1‑140 (MQ=255)
                                                                                             cTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGAc                                   <  1:81919/140‑1 (MQ=255)
                                                                                             cTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGAc                                   <  1:291916/140‑1 (MQ=255)
                                                                                                ttttACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACctc                                <  1:369831/140‑1 (MQ=255)
                                                                                                 tttACATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACctct                               <  1:319489/140‑1 (MQ=255)
                                                                                                     cATCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTActg                           >  2:846140/1‑140 (MQ=255)
                                                                                                      aTCACTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTActgc                          <  2:665720/140‑1 (MQ=255)
                                                                                                          cTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCCCTGGCCGCGGGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCtgtg                      >  2:1329309/1‑140 (MQ=255)
                                                                                                          cTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCtgtg                      >  1:1211206/1‑140 (MQ=255)
                                                                                                          cTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCtgtg                      >  2:829316/1‑140 (MQ=255)
                                                                                                          cTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCtgtg                      >  2:1101824/1‑140 (MQ=255)
                                                                                                          cTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCtgtg                      >  2:228383/1‑140 (MQ=255)
                                                                                                          cTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCtgtg                      >  1:446516/1‑140 (MQ=255)
                                                                                                          cTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCtgtg                      >  2:93674/1‑140 (MQ=255)
                                                                                                          cTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCtgtg                      >  2:105401/1‑140 (MQ=255)
                                                                                                          cTCGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCtgtg                      >  2:285804/1‑140 (MQ=255)
                                                                                                            cgcgcgTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCGGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCTGTGGc                    <  2:1029508/140‑1 (MQ=255)
                                                                                                            cGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCTGTGGc                    <  2:23583/140‑1 (MQ=255)
                                                                                                            cGCCCGTTCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCTGTGGc                    <  2:624559/140‑1 (MQ=255)
                                                                                                                  ttCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTActgct                         <  2:124685/129‑1 (MQ=255)
                                                                                                                  ttCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTActgct                         >  1:124685/1‑129 (MQ=255)
                                                                                                                  ttCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCTGTGGCATGGcc              >  1:1245072/1‑140 (MQ=255)
                                                                                                                  ttCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCTGTGGCATGGcc              >  1:1360669/1‑140 (MQ=255)
                                                                                                                  ttCACTGTTTCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCTGTGGCATGGcc              >  2:350111/1‑140 (MQ=255)
                                                                                                                          ttCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCTGTGGCATGGCCTCGACGAt      <  2:1541885/140‑1 (MQ=255)
                                                                                                                          ttCCACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCTGTGGCATGGCCTCGACGAt      <  2:1454265/140‑1 (MQ=255)
                                                                                                                            ccACCGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCTGTGGCATGGCCTCGACGATGa    >  2:209365/1‑140 (MQ=255)
                                                                                                                              cccGCTGATGCCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCTGTGGCATGGCCTCGACGATGACg  <  2:1546092/139‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                  
AGTCGGTGGCGCGTCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAGAATGAATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAGACCTCTACTGCTGTGGCATGGCCTCGACGATGACG  >  NC_000913/4417281‑4417546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A