Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	108	95.2	3177646	99.2%	3152224	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,574,705	A→G	pseudogene (571/2721 nt)	yjiV →	putative uncharacterized protein YjiV

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,574,705	0	A	G	100.0%	444.3 / NA	117	pseudogene (571/2721 nt)	yjiV	putative uncharacterized protein YjiV
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (64/53); total (64/53)

Only 100 of 120 total aligned reads displayed.

ACTAATATCGTGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATT  >  NC_000913/4574573‑4574841

aCTAATATCGTGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCg                                                                                                                                   <  2:883913/140‑1 (MQ=255)

  tAATATCGTGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGaa                                                                                                                                 <  1:1036962/140‑1 (MQ=255)

  tAATATCGTGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGaa                                                                                                                                 <  2:1361232/140‑1 (MQ=255)

     tatCGTGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATgg                                                                                                                              <  2:1091570/140‑1 (MQ=255)

      atCGTGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGc                                                                                                                             <  1:502386/140‑1 (MQ=255)

       tCGTGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCg                                                                                                                            <  2:517232/140‑1 (MQ=255)

        cGTGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCgg                                                                                                                           <  2:52228/140‑1 (MQ=255)

         gTGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGt                                                                                                                          <  2:1300150/140‑1 (MQ=255)

         gTGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGt                                                                                                                          >  1:721732/1‑140 (MQ=255)

         gTGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGt                                                                                                                          >  1:1059539/1‑140 (MQ=255)

         gTGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGCCGCCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCggg                                                                                                                          >  1:717708/1‑139 (MQ=255)

          tGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTg                                                                                                                         >  2:1356293/1‑140 (MQ=255)

           gCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGc                                                                                                                        >  2:263418/1‑140 (MQ=255)

           gCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGc                                                                                                                        >  1:754082/1‑140 (MQ=255)

           gCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGc                                                                                                                        >  1:751494/1‑140 (MQ=255)

           gCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGc                                                                                                                        >  1:232011/1‑140 (MQ=255)

           gCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGACGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGc                                                                                                                        >  2:1308898/1‑140 (MQ=255)

            cccACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCg                                                                                                                       >  2:1380784/1‑140 (MQ=255)

            cccACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCg                                                                                                                       <  1:725964/140‑1 (MQ=255)

            cccACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCg                                                                                                                       >  1:636169/1‑140 (MQ=255)

            cccACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCg                                                                                                                       >  1:116880/1‑140 (MQ=255)

            cccACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCATCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCg                                                                                                                       >  2:890263/1‑140 (MQ=255)

              cACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTa                                                                                                                     <  1:58365/140‑1 (MQ=255)

               aCCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTAt                                                                                                                    >  1:51192/1‑140 (MQ=255)

                ccGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATg                                                                                                                   <  1:340114/140‑1 (MQ=255)

                ccGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAAGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATg                                                                                                                   >  2:1239937/1‑140 (MQ=255)

                       agagTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCaag                                                                                                            <  1:636319/140‑1 (MQ=255)

                          gTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCaagaag                                                                                                         <  1:480448/140‑1 (MQ=255)

                           tATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGc                                                                                                        >  1:215275/1‑140 (MQ=255)

                            aTTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCa                                                                                                       <  1:1103850/140‑1 (MQ=255)

                             ttGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAg                                                                                                      >  1:834452/1‑140 (MQ=255)

                             ttGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAg                                                                                                      >  1:1465741/1‑140 (MQ=255)

                             ttGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAg                                                                                                      >  1:490679/1‑140 (MQ=255)

                             ttGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCAGAATGGCGGTGCGTATGCAGCAAGAAGCAg                                                                                                      >  2:536068/1‑140 (MQ=255)

                              tGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGa                                                                                                     >  1:591875/1‑140 (MQ=255)

                              tGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGa                                                                                                     >  2:853274/1‑140 (MQ=255)

                              tGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGa                                                                                                     >  2:285891/1‑140 (MQ=255)

                                tCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAAc                                                                                                   >  2:1061950/1‑140 (MQ=255)

                                tCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAAc                                                                                                   >  1:519247/1‑140 (MQ=255)

                                  aGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAGGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGc                                                                                                 >  2:285532/1‑140 (MQ=255)

                                   ggACTTTACCAGAGATGAAGGCGAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCa                                                                                                >  2:913418/1‑140 (MQ=255)

                                     aCTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGt                                                                                              >  2:1277046/1‑140 (MQ=255)

                                     aCTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGt                                                                                              >  1:408893/1‑140 (MQ=255)

                                       tttACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCg                                                                                            >  2:565477/1‑140 (MQ=255)

                                       tttACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCg                                                                                            >  1:141717/1‑140 (MQ=255)

                                       tttACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCg                                                                                            >  2:170143/1‑140 (MQ=255)

                                        ttACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGc                                                                                           <  2:1005053/140‑1 (MQ=255)

                                         tACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCt                                                                                          >  1:937526/1‑140 (MQ=255)

                                              gTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTAcgc                                                                                     >  1:258115/1‑140 (MQ=255)

                                               tgatgaAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTAcgcg                                                                                    >  2:1304239/1‑140 (MQ=255)

                                                   gaAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAg                                                                                <  2:431584/140‑1 (MQ=255)

                                                    aaGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGc                                                                               <  2:1511077/140‑1 (MQ=255)

                                                         aaaGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGt                                                                          >  2:1535620/1‑140 (MQ=255)

                                                         aaaGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGt                                                                          >  2:1333483/1‑140 (MQ=255)

                                                           agagGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCg                                                                        <  1:841323/140‑1 (MQ=255)

                                                            gagGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGa                                                                       <  1:285891/140‑1 (MQ=255)

                                                             agGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGaa                                                                      <  2:591875/140‑1 (MQ=255)

                                                                gCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGTGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAAtt                                                                   <  1:997074/140‑1 (MQ=255)

                                                                gCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAAtt                                                                   <  2:1059539/140‑1 (MQ=255)

                                                                 cGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGc                                                                               >  2:462091/1‑127 (MQ=255)

                                                                 cGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGc                                                                               <  1:462091/127‑1 (MQ=255)

                                                                 cGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATtc                                                                  >  2:289346/1‑140 (MQ=255)

                                                                  gTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATtct                                                                 <  2:490679/140‑1 (MQ=255)

                                                                     ggACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAg                                                              <  2:677575/140‑1 (MQ=255)

                                                                     ggACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAg                                                              <  2:999168/140‑1 (MQ=255)

                                                                     ggACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAg                                                              <  1:777909/140‑1 (MQ=255)

                                                                      gACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGc                                                             <  2:51192/140‑1 (MQ=255)

                                                                      gACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGc                                                             <  1:1308898/140‑1 (MQ=255)

                                                                       aCCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCt                                                            <  1:263418/140‑1 (MQ=255)

                                                                        ccAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTg                                                           <  2:141717/140‑1 (MQ=255)

                                                                              tCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAAGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCa                                                     <  2:706860/140‑1 (MQ=255)

                                                                                  tGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAgg                                                 >  1:479303/1‑140 (MQ=255)

                                                                                   gCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGa                                                <  2:431779/140‑1 (MQ=255)

                                                                                     cAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACg                                              <  1:1277046/140‑1 (MQ=255)

                                                                                     cAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACg                                              <  1:86363/140‑1 (MQ=255)

                                                                                     cAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACg                                              <  2:787763/140‑1 (MQ=255)

                                                                                     cAGGACGAGGTCATCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACg                                              <  1:890263/140‑1 (MQ=255)

                                                                                      aGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCCCTTACGCGGAAGCGGAGTCGAAAGTCTCAGCGGGCATCAAAGGACGc                                             >  2:663108/1‑140 (MQ=255)

                                                                                       ggACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCa                                            <  2:1558600/140‑1 (MQ=255)

                                                                                                  tcgACTCATCACCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAg                                 <  2:751494/140‑1 (MQ=255)

                                                                                                       tcatcaCCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCg                            <  2:232011/140‑1 (MQ=255)

                                                                                                       tcatcaCCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCg                            <  1:853274/140‑1 (MQ=255)

                                                                                                        catcaCCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGa                           <  2:408893/140‑1 (MQ=255)

                                                                                                         atcaCCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCa                                            <  1:1271036/122‑1 (MQ=255)

                                                                                                         atcaCCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCa                                            >  2:1271036/1‑122 (MQ=255)

                                                                                                         atcaCCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaa                          >  2:483774/1‑140 (MQ=255)

                                                                                                            aCCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaatgc                       <  1:1356293/140‑1 (MQ=255)

                                                                                                            aCCTTTACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaatgc                       <  1:875791/140‑1 (MQ=255)

                                                                                                                ttACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaatgccaat                   >  1:856971/1‑140 (MQ=255)

                                                                                                                 tACAGACAGTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaatgccaatg                  >  2:1145692/1‑140 (MQ=255)

                                                                                                                   cagacagTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaatgccaatgcc                <  1:1535620/140‑1 (MQ=255)

                                                                                                                   cagacagTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaatgccaatgcc                >  1:545353/1‑140 (MQ=255)

                                                                                                                      acagTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGAt             <  2:937526/140‑1 (MQ=255)

                                                                                                                        agTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCt           >  1:1578231/1‑140 (MQ=255)

                                                                                                                        agTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCt           >  1:1502322/1‑140 (MQ=255)

                                                                                                                        agTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCt           >  2:33476/1‑140 (MQ=255)

                                                                                                                        agTCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCt           >  1:1044274/1‑140 (MQ=255)

                                                                                                                          tCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTgg         >  2:833915/1‑140 (MQ=255)

                                                                                                                          tCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTgg         >  1:1336343/1‑140 (MQ=255)

                                                                                                                          tCGACAAGGGGCAGCCCGAATGGCGGTGCGTATGCAGCAAGAACCAGAACGCCGGCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGGCTAAAGCGCCGAATGCCAATGCCGATCTgg         >  2:1568614/1‑140 (MQ=255)

ACTAATATCGTGCCCACCGTTCTAGAGTATTGTCAGGACTTTACCAGTGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATT  >  NC_000913/4574573‑4574841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A