Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A44 F60 I1 R1 16 77.8 2642868 98.6% 2605867 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,967,828 A→G intergenic (+152/‑88) rho → / → rfe transcription termination factor Rho/UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,967,8280AG98.8% 313.4 / NA 85intergenic (+152/‑88)rho/rfetranscription termination factor Rho/UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (41/43);  minor base T (0/1);  total (41/44)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGACTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACAGTGAGTACTGATCTCATCAGTATTTTTTTAT  >  NC_000913/3967697‑3967961
                                                                                                                                    |                                                                                                                                     
gCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTggg                                                                                                                               >  1:741954/1‑140 (MQ=255)
  cACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGtt                                                                                                                             >  2:755315/1‑140 (MQ=255)
  cACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGtt                                                                                                                             <  1:922763/140‑1 (MQ=255)
          tACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAACGGTTAATCTTTTCAAAGGGCTGGTGGGTTTGGAACgg                                                                                                                     >  1:447509/1‑140 (MQ=255)
               ggCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTCGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACttt                                                                                                                >  1:1137686/1‑140 (MQ=255)
                gCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTATTTTTTGCACAGTGCTGGTGGGGTTGGAACGGACTTTc                                                                                                               >  1:501532/1‑140 (MQ=255)
                gCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGACCGGACTTTc                                                                                                               >  2:156978/1‑140 (MQ=255)
                gCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTc                                                                                                               >  2:12607/1‑140 (MQ=255)
                gCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTc                                                                                                               >  1:294231/1‑140 (MQ=255)
                gCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTc                                                                                                               >  1:290488/1‑140 (MQ=255)
                gCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTc                                                                                                               >  1:931486/1‑140 (MQ=255)
                gCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTc                                                                                                               >  2:1223440/1‑140 (MQ=255)
                 cGTTTTGCTTTTATATCTGTAAGCTTAATGCAGCGGTGGGGATGTTA‑GCAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTcc                                                                                                              <  2:404498/140‑1 (MQ=255)
                 cGTTTTGCTTTTATATCCGTAAACTTAATGCCGCGTTGGTGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTcc                                                                                                              <  2:447509/140‑1 (MQ=255)
                  gTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGATGGGTTCGGAACGGACTTTccc                                                                                                             >  1:472311/1‑140 (MQ=255)
                    tttGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCtt                                                                                                           <  2:40238/140‑1 (MQ=255)
                    tttGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCtt                                                                                                           <  2:944041/140‑1 (MQ=255)
                     ttGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTcc                                                                                                              >  2:1099435/1‑136 (MQ=255)
                     ttGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTcc                                                                                                              <  1:1099435/136‑1 (MQ=255)
                       gCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTg                                                                                                        >  2:974108/1‑140 (MQ=255)
                          tttATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAAt                                                                                                     <  1:974108/140‑1 (MQ=255)
                           ttATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTGTGGAACGGAATTTCCCTTCTGAATa                                                                                                    >  1:404498/1‑140 (MQ=255)
                               atCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAgg                                                                                                <  2:120172/140‑1 (MQ=255)
                                  tGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCt                                                                                             >  2:814563/1‑140 (MQ=255)
                                   gTAATCTTAATGCCGTGCTGGCGATATTA‑CGAAAATTACTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCtt                                                                                            <  1:372570/140‑1 (MQ=255)
                                   gTAATCTTAATGCCGCGCTGGCGATGTTA‑GGTAAATTCCGGGAATTTGTTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCtt                                                                                            <  2:472311/140‑1 (MQ=255)
                                   gTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCtt                                                                                                           >  2:254065/1‑125 (MQ=255)
                                   gTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCtt                                                                                                           <  1:254065/125‑1 (MQ=255)
                                   gTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCtt                                                                                            >  1:1029067/1‑140 (MQ=255)
                                   gTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCtt                                                                                            <  2:931486/140‑1 (MQ=255)
                                   gTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCtt                                                                                            <  1:755315/140‑1 (MQ=255)
                                    tAATCTTACTGCCGCGCTGGCGATGTTA‑GGCTATTTCCTCGAATTTGCCGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTc                                                                                           <  2:622189/140‑1 (MQ=255)
                                    tAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTc                                                                                           <  1:1193910/140‑1 (MQ=255)
                                    tAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTc                                                                                           <  1:127/140‑1 (MQ=255)
                                     aaTCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTTGGTGTGGGACGGACTTACCCTCCTGAATAAAGGTCTTCg                                                                                          >  2:372570/1‑140 (MQ=255)
                                     aaTCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTATTGCACGGACTTTCCCTTCTGAATAAAGGTCTTCg                                                                                          >  2:621045/1‑140 (MQ=255)
                                      aTCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGt                                                                                         <  1:855920/140‑1 (MQ=255)
                                          tAATGCCGCGCTGGCGATGTTAGGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGt                                                                                      >  1:6544/1‑140 (MQ=255)
                                           aaTGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCtt                                                                                            >  2:790340/1‑132 (MQ=255)
                                           aaTGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCtt                                                                                            <  1:790340/132‑1 (MQ=255)
                                            aTGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATaa                                                                                                   <  1:1132095/124‑1 (MQ=255)
                                            aTGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATaa                                                                                                   >  2:1132095/1‑124 (MQ=255)
                                                cgcgCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACtt                                                                               >  1:665525/1‑140 (MQ=255)
                                                  cgcTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCt                                                                             >  1:690105/1‑140 (MQ=255)
                                                      ggCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCta                                                                         <  1:655838/140‑1 (MQ=255)
                                                            gTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAAtt                                                                   >  1:804169/1‑140 (MQ=255)
                                                            gTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAAtt                                                                   <  2:290488/140‑1 (MQ=255)
                                                              tA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAAtttt                                                                 <  2:690105/140‑1 (MQ=255)
                                                                  gAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTtctc                                                              >  1:1003609/1‑140 (MQ=255)
                                                                   aaaaTTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTctct                                                             <  2:1272650/140‑1 (MQ=255)
                                                                   aaaaTTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTctct                                                             <  1:1076031/140‑1 (MQ=255)
                                                                      aTTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTgag                                                          <  2:294231/140‑1 (MQ=255)
                                                                        tCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGagag                                                        >  2:1057679/1‑140 (MQ=255)
                                                                        tCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCATCGTGGTTATATTTATGCTAATAATTTTCTCTGagag                                                        >  1:420282/1‑140 (MQ=255)
                                                                           tGGAATTTGCTGGCACGTTATGCAACTTGCATATCAATTGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAgcat                                                     <  1:621045/140‑1 (MQ=255)
                                                                               aTTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAgcatgcat                                                 <  2:206723/140‑1 (MQ=255)
                                                                                     tGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATTCATTGTGaa                                           <  2:6544/140‑1 (MQ=255)
                                                                                       gCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGAGGTTATACTTCTACTACTAATTTTCTCTGAGAGCATGCATTGTGAAtt                                         >  2:556068/1‑140 (MQ=255)
                                                                                            ttATGCAATTTGCATATGAAATTGTTAATTTTTGCACACGGCTGGTGGGTCTTCAACGGGCTTGCCCTTCTGAATAAAGGTCTTCGTCGTTATGCTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTg                                    <  2:553669/140‑1 (MQ=255)
                                                                                            ttATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTg                                    >  2:1191753/1‑140 (MQ=255)
                                                                                            ttATGCAATTTGCATAGCAAATGGTTAATTGTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTg                                    <  2:257014/140‑1 (MQ=255)
                                                                                            ttATGCAACTTGCATATCAAATGGTTAATTGTTGCGCAGGGCTGGTGGCTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTg                                    <  2:623469/140‑1 (MQ=255)
                                                                                             tATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGa                                   <  1:1002462/140‑1 (MQ=255)
                                                                                              aTGCAATTTGCATATCATATGGATAATTTTTCCACTGGGATGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGAc                                  <  2:420282/140‑1 (MQ=255)
                                                                                               tGCAATTTGCATATCGAATGGTCAATTTTTGCACAGGTCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACa                                 <  1:505859/140‑1 (MQ=255)
                                                                                               tGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACa                                 <  2:1029067/140‑1 (MQ=255)
                                                                                               tGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACa                                 >  1:673441/1‑140 (MQ=255)
                                                                                               tGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACa                                 <  1:217871/140‑1 (MQ=255)
                                                                                                 cAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACAGt                               <  1:1057679/140‑1 (MQ=255)
                                                                                                 cAATTTGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACAGt                               <  1:11768/140‑1 (MQ=255)
                                                                                                    tttGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACAGTGAg                            <  1:1223440/140‑1 (MQ=255)
                                                                                                      tGCATATCAATTGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACAGTGAGTa                          >  2:3962/1‑140 (MQ=255)
                                                                                                      tGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGaa                                           >  2:113748/1‑123 (MQ=255)
                                                                                                      tGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGaa                                           <  1:113748/123‑1 (MQ=255)
                                                                                                      tGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACAGTGAGTa                          >  1:673790/1‑140 (MQ=255)
                                                                                                      tGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCGCTGAGAGGATGGATGGTGAATGTACTGACAGTGAGTa                          >  1:373840/1‑140 (MQ=255)
                                                                                                      tGCATATCAAATGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTGCTCTGAGAGCATGCATTGTGAATTTACTGACAGTGAGTa                          <  1:156978/140‑1 (MQ=255)
                                                                                                         atatCAATTGGTTAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACAGTGAGTACTg                       <  1:3962/140‑1 (MQ=255)
                                                                                                                    ttAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACAGTGAGTACTGATCTCATCAGt            <  2:673790/140‑1 (MQ=255)
                                                                                                                     tAATTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACAGTGAGTACTGATCTCATCAGTa           >  2:777757/1‑140 (MQ=255)
                                                                                                                      aaTTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAAAGCATGCAGTGTAAATTTACTGACAATGAGCACTGATCTCATCAGTAt          >  2:478918/1‑140 (MQ=255)
                                                                                                                       aTTTTTGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGAAAGTGAGTACTGATCTCATCAGTAtt         >  1:583499/1‑140 (MQ=255)
                                                                                                                          tttGCACAGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACAGTGAGTACTGATCTCATCAGTAttttt      <  2:665525/140‑1 (MQ=255)
                                                                                                                              cacaGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACAGTGAGTACTGATCTCATCAGTATTTTTTTAt  <  1:314709/140‑1 (MQ=255)
                                                                                                                              cacaGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACAGTGAGTACTGATCTCATCAGTATTTTTTTAt  >  1:998898/1‑140 (MQ=255)
                                                                                                                              cacaGGGCTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACAGTGAGTACTGATCTCATCAGTATTTTTTTAt  >  2:314709/1‑140 (MQ=255)
                                                                                                                                    |                                                                                                                                     
GCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTA‑GGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGACTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTGTGAATTTACTGACAGTGAGTACTGATCTCATCAGTATTTTTTTAT  >  NC_000913/3967697‑3967961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A