Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A35 F60 I1 R1 17 61.1 2085152 98.7% 2058045 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,577,146 G→A T149T (ACC→ACT gntK ← D‑gluconate kinase, thermostable

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,577,1460GA100.0% 202.7 / NA 59T149T (ACC→ACTgntKD‑gluconate kinase, thermostable
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (37/22);  total (37/22)

AGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCGGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATAGATGAAAGAGAGA  >  NC_000913/3577012‑3577281
                                                                                                                                      |                                                                                                                                       
agcagTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTc                                                                                                                                    >  1:917108/1‑140 (MQ=255)
              cccTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCt                                                                                                                      >  2:778701/1‑140 (MQ=255)
               ccTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCAccc                                                                                                                          <  2:58631/135‑1 (MQ=255)
               ccTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCAccc                                                                                                                          >  1:58631/1‑135 (MQ=255)
               ccTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTc                                                                                                                     >  1:663653/1‑140 (MQ=255)
                 tACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCACACCCGGCTCCt                                                                                                                   >  2:985864/1‑140 (MQ=255)
                         ttAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGtt                                                                                                           >  1:5077/1‑140 (MQ=255)
                                aaGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACt                                                                                                    >  2:515853/1‑140 (MQ=255)
                                aaGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACt                                                                                                    >  1:61528/1‑140 (MQ=255)
                                  gCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGc                                                                                                  >  2:208677/1‑140 (MQ=255)
                                   cGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCg                                                                                                 <  1:790233/140‑1 (MQ=255)
                                   cGTTAATGTAGTCACTACTGATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCg                                                                                                 >  2:600007/1‑140 (MQ=255)
                                       aaTGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCAc                                                                                             <  2:728726/140‑1 (MQ=255)
                                             gTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACAt                                                                                       >  1:782339/1‑140 (MQ=255)
                                              tCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACAtt                                                                                      >  1:4246/1‑140 (MQ=255)
                                              tCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACAtt                                                                                      >  2:149841/1‑140 (MQ=255)
                                               cACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACAttt                                                                                     <  2:5077/140‑1 (MQ=255)
                                                actactTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCGGCGGTTGATCAATATCAACCACCGGACCTTCAGTTCCGTCCGCACCCGCCCCTTCCACCGTTTAAAACGGGGCAACCAACTTTTg                                                                                    >  2:593489/1‑140 (MQ=255)
                                                  tactTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTggg                                                                                  <  1:234219/140‑1 (MQ=255)
                                                  tactTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTggg                                                                                  >  2:725958/1‑140 (MQ=255)
                                                       aTTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTa                                                                             <  2:175632/140‑1 (MQ=255)
                                                            ccTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACAttt                                                                                     <  2:141244/127‑1 (MQ=255)
                                                            ccTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACAttt                                                                                     >  1:141244/1‑127 (MQ=255)
                                                            ccTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGaa                                                                        >  2:252833/1‑140 (MQ=255)
                                                              ttttttAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAAt                                                                      >  1:574684/1‑140 (MQ=255)
                                                              ttttttAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAAt                                                                      >  1:166045/1‑140 (MQ=255)
                                                                       aaCCTCAATGGTGCTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTccg                                                            <  2:664176/140‑1 (MQ=255)
                                                                        acagcAATGGTGCTTGCCACAAAACCTTCCATCGGTTGATCGATATCCCCCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTgcg                                                            <  2:441878/136‑1 (MQ=255)
                                                                                  tGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAgg                                                  <  2:166045/140‑1 (MQ=255)
                                                                                  tGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAgg                                                  <  2:574684/140‑1 (MQ=255)
                                                                                    cTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAggcg                                                >  2:756523/1‑140 (MQ=255)
                                                                                    cTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAggcg                                                >  1:636728/1‑140 (MQ=255)
                                                                                    cTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAggcg                                                >  2:752682/1‑140 (MQ=255)
                                                                                    cTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGCCACCAACACTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAggcg                                                >  2:413274/1‑140 (MQ=255)
                                                                                    cTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGACACCAACAATTGTGTTATAAAGAAAAGGCCATTGCGCGCTTTCAggcg                                                >  2:287849/1‑140 (MQ=255)
                                                                                     ttGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAggcgg                                               >  1:605377/1‑140 (MQ=255)
                                                                                       gCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAATAAACGGCCTTTGCTCGCTTTCAggcctgt                                             >  1:441878/1‑136 (MQ=255)
                                                                                       gCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGACAGCAACATTTAGGTGTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCt                                             >  2:421962/1‑140 (MQ=255)
                                                                                             acacCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAAt                                       <  1:752682/140‑1 (MQ=255)
                                                                                                  ttCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACAt                                  <  1:208677/140‑1 (MQ=255)
                                                                                                   tCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATc                                 >  1:668137/1‑140 (MQ=255)
                                                                                                   tCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATc                                 >  1:578474/1‑140 (MQ=255)
                                                                                                      aGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAAt                                       <  1:872234/131‑1 (MQ=255)
                                                                                                      aGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAAt                                       >  2:872234/1‑131 (MQ=255)
                                                                                                        cGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTGAGACGGCTTGCAATCACATCAAAAt                            >  1:491050/1‑140 (MQ=255)
                                                                                                          gTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCg                          >  1:863424/1‑140 (MQ=255)
                                                                                                          gTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCg                          <  1:586645/140‑1 (MQ=255)
                                                                                                               tCGATATCCACCACCAGTACATCAGTTTCGTCCACACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCttt                     <  1:985864/140‑1 (MQ=255)
                                                                                                                  atatCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCaa                  >  1:782912/1‑140 (MQ=255)
                                                                                                                  atatCCACCACCAGTACATCAGCTTCGTCCGCACCCGTCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCaa                  <  1:287849/140‑1 (MQ=255)
                                                                                                                    atCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAAt                >  1:2425/1‑140 (MQ=255)
                                                                                                                    atCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAAt                <  2:61528/140‑1 (MQ=255)
                                                                                                                     tCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATa               >  2:700485/1‑140 (MQ=255)
                                                                                                                       caccaccaGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATAGa             <  2:578474/140‑1 (MQ=255)
                                                                                                                        accaccaGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAAt                >  1:594917/1‑136 (MQ=255)
                                                                                                                        accaccaGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAAt                <  2:594917/136‑1 (MQ=255)
                                                                                                                         ccaccaGTACATCAGTTTCGTCCGCACCCGGCTCCTGTAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAGTCAAATGAAAATCGCCTTTCAAATAGATg           >  1:366989/1‑140 (MQ=255)
                                                                                                                          caccaGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATAGATGa          >  1:157340/1‑140 (MQ=255)
                                                                                                                             caGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATAGATGAAag       >  1:209189/1‑140 (MQ=255)
                                                                                                                                  cATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATAGATGAAAgagaga  <  1:600007/140‑1 (MQ=255)
                                                                                                                                  cATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATAGATGAAAgagaga  <  1:700485/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                       
AGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCGGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATAGATGAAAGAGAGA  >  NC_000913/3577012‑3577281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

N/A