Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A35 F60 I1 R1
|
17 |
61.1 |
2085152 |
98.7% |
2058045 |
139.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,577,146 |
G→A |
T149T (ACC→ACT) |
gntK ← |
D‑gluconate kinase, thermostable |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,577,146 | 0 | G | A | 100.0%
| 202.7
/ NA
| 59 | T149T (ACC→ACT) | gntK | D‑gluconate kinase, thermostable |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (37/22); total (37/22) |
AGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCGGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATAGATGAAAGAGAGA > NC_000913/3577012‑3577281
|
agcagTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTc > 1:917108/1‑140 (MQ=255)
cccTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCt > 2:778701/1‑140 (MQ=255)
ccTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCAccc < 2:58631/135‑1 (MQ=255)
ccTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCAccc > 1:58631/1‑135 (MQ=255)
ccTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTc > 1:663653/1‑140 (MQ=255)
tACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCACACCCGGCTCCt > 2:985864/1‑140 (MQ=255)
ttAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGtt > 1:5077/1‑140 (MQ=255)
aaGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACt > 2:515853/1‑140 (MQ=255)
aaGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACt > 1:61528/1‑140 (MQ=255)
gCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGc > 2:208677/1‑140 (MQ=255)
cGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCg < 1:790233/140‑1 (MQ=255)
cGTTAATGTAGTCACTACTGATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCg > 2:600007/1‑140 (MQ=255)
aaTGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCAc < 2:728726/140‑1 (MQ=255)
gTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACAt > 1:782339/1‑140 (MQ=255)
tCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACAtt > 1:4246/1‑140 (MQ=255)
tCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACAtt > 2:149841/1‑140 (MQ=255)
cACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACAttt < 2:5077/140‑1 (MQ=255)
actactTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCGGCGGTTGATCAATATCAACCACCGGACCTTCAGTTCCGTCCGCACCCGCCCCTTCCACCGTTTAAAACGGGGCAACCAACTTTTg > 2:593489/1‑140 (MQ=255)
tactTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTggg < 1:234219/140‑1 (MQ=255)
tactTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTggg > 2:725958/1‑140 (MQ=255)
aTTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTa < 2:175632/140‑1 (MQ=255)
ccTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACAttt < 2:141244/127‑1 (MQ=255)
ccTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACAttt > 1:141244/1‑127 (MQ=255)
ccTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGaa > 2:252833/1‑140 (MQ=255)
ttttttAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAAt > 1:574684/1‑140 (MQ=255)
ttttttAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAAt > 1:166045/1‑140 (MQ=255)
aaCCTCAATGGTGC‑TGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTccg < 2:664176/140‑1 (MQ=255)
acagcAATGGTGCTTGCCACAAAACCTTCCATCGGTTGATCGATATCCCCCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTgcg < 2:441878/136‑1 (MQ=255)
tGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAgg < 2:166045/140‑1 (MQ=255)
tGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAgg < 2:574684/140‑1 (MQ=255)
cTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAggcg > 2:756523/1‑140 (MQ=255)
cTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAggcg > 1:636728/1‑140 (MQ=255)
cTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAggcg > 2:752682/1‑140 (MQ=255)
cTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGCCACCAACACTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAggcg > 2:413274/1‑140 (MQ=255)
cTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGACACCAACAATTGTGTTATAAAGAAAAGGCCATTGCGCGCTTTCAggcg > 2:287849/1‑140 (MQ=255)
ttGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAggcgg > 1:605377/1‑140 (MQ=255)
gCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAATAAACGGCCTTTGCTCGCTTTCAggcctgt > 1:441878/1‑136 (MQ=255)
gCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGACAGCAACATTTAGGTGTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCt > 2:421962/1‑140 (MQ=255)
acacCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAAt < 1:752682/140‑1 (MQ=255)
ttCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACAt < 1:208677/140‑1 (MQ=255)
tCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATc > 1:668137/1‑140 (MQ=255)
tCCAGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATc > 1:578474/1‑140 (MQ=255)
aGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAAt < 1:872234/131‑1 (MQ=255)
aGCGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAAt > 2:872234/1‑131 (MQ=255)
cGGTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTGAGACGGCTTGCAATCACATCAAAAt > 1:491050/1‑140 (MQ=255)
gTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCg > 1:863424/1‑140 (MQ=255)
gTTGATCGATATCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCg < 1:586645/140‑1 (MQ=255)
tCGATATCCACCACCAGTACATCAGTTTCGTCCACACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCttt < 1:985864/140‑1 (MQ=255)
atatCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCaa > 1:782912/1‑140 (MQ=255)
atatCCACCACCAGTACATCAGCTTCGTCCGCACCCGTCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCaa < 1:287849/140‑1 (MQ=255)
atCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAAt > 1:2425/1‑140 (MQ=255)
atCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAAt < 2:61528/140‑1 (MQ=255)
tCCACCACCAGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATa > 2:700485/1‑140 (MQ=255)
caccaccaGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATAGa < 2:578474/140‑1 (MQ=255)
accaccaGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAAt > 1:594917/1‑136 (MQ=255)
accaccaGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAAt < 2:594917/136‑1 (MQ=255)
ccaccaGTACATCAGTTTCGTCCGCACCCGGCTCCTGTAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAGTCAAATGAAAATCGCCTTTCAAATAGATg > 1:366989/1‑140 (MQ=255)
caccaGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATAGATGa > 1:157340/1‑140 (MQ=255)
caGTACATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATAGATGAAag > 1:209189/1‑140 (MQ=255)
cATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATAGATGAAAgagaga < 1:600007/140‑1 (MQ=255)
cATCAGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATAGATGAAAgagaga < 1:700485/140‑1 (MQ=255)
|
AGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAATGGTGCTTGCCACAACACCTTCCAGCGGTTGATCGATATCCACCACCAGTACATCGGTTTCGTCCGCACCCGGCTCCTGCAGCGTTTCAAACTGCGTCACCAACATTTGGGTTTTAAAGAAATGGCCTTTGCGCGCTTTCAGGCGGCTTTCAATCACATCAAAATCGCCTTTCAAATAGATGAAAGAGAGA > NC_000913/3577012‑3577281
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A