Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A21 F60 I1 R1
|
12 |
98.5 |
3402390 |
98.5% |
3351354 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,201,043 |
G→A |
G160R (GGG→AGG) |
yjaH → |
DUF1481 domain‑containing protein YjaH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,201,043 | 0 | G | A | 98.9%
| 309.8
/ ‑4.5
| 90 | G160R (GGG→AGG) | yjaH | DUF1481 domain‑containing protein YjaH |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (52/37); total (53/37) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGCTTTATGCAACGTGAATCCGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGGGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATG > NC_000913/4200908‑4201176
|
aGCTTTATGCAACGTGAATCCGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGgcg < 2:1254707/140‑1 (MQ=255)
tttATGCAACGTGAATCCGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTg > 2:1265886/1‑140 (MQ=255)
tttATGCAACGTGAATCCGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTg > 1:1501143/1‑140 (MQ=255)
ttATGCAACGTGAATCCGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTgg < 2:1089540/140‑1 (MQ=255)
tATGCAACGTGAATCCGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTGGCGATGCCCTACGTCAAGGGAGAGTGGTGCAGCGCCAGAGGCGCTGGc > 2:471732/1‑140 (MQ=255)
aTGCAACGTGAATCCGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCa < 2:996779/140‑1 (MQ=255)
tGCAACGTGAATCCGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCAt > 2:1611132/1‑140 (MQ=255)
aaCGTGAATCCGATGCGGAAAATCAACAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCg < 1:475646/140‑1 (MQ=255)
aCGTGAATCCGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGa > 2:349148/1‑140 (MQ=255)
cGTGAATCCGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGAt > 1:297289/1‑140 (MQ=255)
cGTGAATCCGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGAt > 2:388611/1‑140 (MQ=255)
aaTCCGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGaa < 2:872561/140‑1 (MQ=255)
aTCCGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAAc > 1:44930/1‑140 (MQ=255)
ccGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAg < 1:11792/140‑1 (MQ=255)
aTGGGGAAAAGCAGCTGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGAcc < 1:506169/140‑1 (MQ=255)
tGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCg > 2:125857/1‑140 (MQ=255)
tGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCg > 1:400051/1‑140 (MQ=255)
gAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGac < 1:125857/140‑1 (MQ=255)
gAAAAGCAGCAGCTTCCTAACGTCCCAATCGATTTATTCCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGac < 1:471732/140‑1 (MQ=255)
gcagcTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCg > 1:1162111/1‑140 (MQ=255)
gcagcTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCg < 2:915201/140‑1 (MQ=255)
cagcTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGa > 2:425593/1‑140 (MQ=255)
gcTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGTGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAg > 1:1398187/1‑140 (MQ=255)
tCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCa < 1:157064/140‑1 (MQ=255)
tCTAACGACCAAATCCATTTATCCCGTTATCGTGCTGTTCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCa < 1:803169/140‑1 (MQ=255)
cTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGCTGGAACAGACCGTGACCACCTGCGAAGGGCaa < 2:1162111/140‑1 (MQ=255)
cTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCaa < 1:425593/140‑1 (MQ=255)
aCCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGTGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCAtt < 2:1398187/140‑1 (MQ=255)
tCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCt < 1:349148/140‑1 (MQ=255)
ttATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGAttt > 2:1260105/1‑140 (MQ=255)
ttATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAAc > 1:1359514/1‑125 (MQ=255)
ttATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAAc < 2:1359514/125‑1 (MQ=255)
ttATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGc > 2:246969/1‑140 (MQ=255)
tATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCa < 2:160109/140‑1 (MQ=255)
cGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGc < 1:388611/140‑1 (MQ=255)
tGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGa > 2:1612433/1‑140 (MQ=255)
gCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGAt < 2:297289/140‑1 (MQ=255)
gCTGATCAGATCCGCCAGATTAACGATGCCTAACGTCAGTGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGAt < 2:640431/140‑1 (MQ=255)
cTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATa > 1:1629509/1‑140 (MQ=255)
cTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATa > 2:91684/1‑140 (MQ=255)
gATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCg < 2:1640244/135‑1 (MQ=255)
gATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCg > 1:1640244/1‑135 (MQ=255)
aTCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCCAACCATTAAACCTGCTTTAGACTCGCAGGCGATAgcg > 1:640431/1‑140 (MQ=255)
aTCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAgcg > 2:1009395/1‑140 (MQ=255)
aTCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTc < 2:929536/122‑1 (MQ=255)
aTCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTc > 1:929536/1‑122 (MQ=255)
aTCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAgg < 2:1223756/127‑1 (MQ=255)
aTCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAgg > 1:1223756/1‑127 (MQ=255)
aTCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCg > 2:323992/1‑129 (MQ=255)
aTCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCg < 1:323992/129‑1 (MQ=255)
aTCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCatat > 1:57362/1‑140 (MQ=255)
aTCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCatat > 2:1279607/1‑140 (MQ=255)
ccGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCg > 1:965465/1‑140 (MQ=255)
cGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGAt > 2:1566628/1‑128 (MQ=255)
cGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGAt < 1:1566628/128‑1 (MQ=255)
ccAGATTAGCGATGCCTTACGTCAGTGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGGAAACCATTAAACGTGATTTAGATTCGCAGGCGATAGCGCATATCGAgc > 2:739392/1‑140 (MQ=255)
ccAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTGGATTCGCAGGCGATAGCGCATATCGAgc > 2:1498537/1‑140 (MQ=255)
ccAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAgc > 1:897361/1‑140 (MQ=255)
aTTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGcgccg > 2:1539731/1‑140 (MQ=255)
aTTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGcgccg > 1:1060594/1‑140 (MQ=255)
ttAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGcgccgc < 1:246969/140‑1 (MQ=255)
gCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCg < 2:78538/140‑1 (MQ=255)
gCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCg < 2:400051/140‑1 (MQ=255)
ccTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGc > 1:1438181/1‑140 (MQ=255)
ccTTACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGc > 2:958926/1‑140 (MQ=255)
ttACGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGctc > 2:310896/1‑140 (MQ=255)
cGTCAGGGGAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCtcttc > 1:329903/1‑140 (MQ=255)
ggggAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCaga < 1:931507/125‑1 (MQ=255)
ggggAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCaga > 2:931507/1‑125 (MQ=255)
ggggAGAGTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTg > 1:1463236/1‑140 (MQ=255)
agagTCGTGCTGCGCCAGGGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGt > 2:1095349/1‑140 (MQ=255)
agTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGctc < 1:881877/126‑1 (MQ=255)
agTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGctc > 2:881877/1‑126 (MQ=255)
agTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGtt > 1:1140224/1‑133 (MQ=255)
agTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGtt < 2:1140224/133‑1 (MQ=255)
agTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCa > 2:1520579/1‑140 (MQ=255)
agTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCa > 1:1580147/1‑140 (MQ=255)
agTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCa > 2:1257647/1‑140 (MQ=255)
agTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCa > 2:1140920/1‑140 (MQ=255)
agTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGCCGATAGCGCATAGCGACAGCCGCCAGAGCCGATCTTCTGTTGATGTCa > 2:788861/1‑140 (MQ=255)
gTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAg < 1:1279607/140‑1 (MQ=255)
gTCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAg > 1:295293/1‑140 (MQ=255)
tCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCtctt < 1:1370878/126‑1 (MQ=255)
tCGTGCTGCGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCtctt > 2:1370878/1‑126 (MQ=255)
tgctgcGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCGAGAGCCTCTCTTCAGTTGATGTCAGCGTg > 1:447734/1‑140 (MQ=255)
tgctgcGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTg > 2:160284/1‑140 (MQ=255)
ctgcGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGc < 2:57362/140‑1 (MQ=255)
ctgcGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGc < 2:1463236/140‑1 (MQ=255)
ctgcGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGc < 2:1629509/140‑1 (MQ=255)
ctgcGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGc < 1:1265886/140‑1 (MQ=255)
tgcGCCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCa > 2:1469210/1‑140 (MQ=255)
cgcCAGAGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATg > 1:1307406/1‑140 (MQ=255)
|
AGCTTTATGCAACGTGAATCCGATGGGGAAAAGCAGCAGCTTTCTAACGACCAAATCGATTTATACCGTTATCGTGCTGATCAGATCCGCCAGATTAGCGATGCCTTACGTCAGGGGAGAGTCGTGCTGCGCCAGGGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATG > NC_000913/4200908‑4201176
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
