Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A26 F60 I1 R1 14 62.5 2134928 99.2% 2117848 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,452,690 Δ49 bp coding (120‑168/1026 nt) ytfT → galactofuranose ABC transporter putative membrane subunit YtfT

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4452690 4452738 49 44 [0] [0] 43 ytfT galactofuranose ABC transporter putative membrane subunit YtfT

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 44526890 (0.000)38 (0.640) 31/260 0.6 100% coding (119/1026 nt) ytfT galactofuranose ABC transporter putative membrane subunit YtfT
?NC_000913 4452739 = 0 (0.000)coding (169/1026 nt) ytfT galactofuranose ABC transporter putative membrane subunit YtfT

GATK/CNVnator alignment

N/A