Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A17 F48 I1 R1 90 35.3 1199032 98.5% 1181046 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 437,372 Δ1 bp coding (764/975 nt) yajO ← 1‑deoxyxylulose‑5‑phosphate synthase YajO

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913437,3720G.100.0% 156.6 / NA 37coding (764/975 nt)yajO1‑deoxyxylulose‑5‑phosphate synthase YajO
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (20/17);  total (20/17)

CGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCAT  >  NC_000913/437242‑437506
                                                                                                                                  |                                                                                                                                      
cgcgTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGctc                                                                                                                              >  2:525698/1‑140 (MQ=255)
cgcgTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGctc                                                                                                                              >  2:290819/1‑140 (MQ=255)
    ttCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCg                                                                                                                          <  2:356535/140‑1 (MQ=255)
          aGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTgc                                                                                                                    >  2:229669/1‑140 (MQ=255)
             tcatcaAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGcgcg                                                                                                                 >  2:479661/1‑140 (MQ=255)
                   aGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCAttt                                                                                                           >  2:177017/1‑140 (MQ=255)
                         tcttcGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCg                                                                                                     >  1:419842/1‑140 (MQ=255)
                         tcttcGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCCTCATTTTCATCg                                                                                                     >  1:49054/1‑140 (MQ=255)
                                 cgAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGctttcttt                                                                                             <  1:479661/140‑1 (MQ=255)
                                  gAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTta                                                                                            >  2:298916/1‑140 (MQ=255)
                                    aGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTtata                                                                                          <  1:80474/140‑1 (MQ=255)
                                         cGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCCTCATTTTCATCGCTTTCTTTATAGAGAt                                                                                     <  2:49054/140‑1 (MQ=255)
                                                   tGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCAc                                                                           <  1:255819/140‑1 (MQ=255)
                                                        cAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCtcat                                                                      <  1:229669/140‑1 (MQ=255)
                                                         aaTGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCtcatc                                                                     <  2:299697/140‑1 (MQ=255)
                                                             cccGGTTTACTCAACAACCAGGCCATCACAACTTCTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTTTAGAGATTTGTCCCCACCTCATCAgtc                                                                 >  2:355419/1‑138 (MQ=255)
                                                             cccGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGac                                                                 >  1:594713/1‑140 (MQ=255)
                                                                     aCTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCg                                                         <  1:188245/140‑1 (MQ=255)
                                                                                    cAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTcc                                          <  2:394942/140‑1 (MQ=255)
                                                                                        gcAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTcccacg                                      >  2:65616/1‑137 (MQ=255)
                                                                                            cTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGAc                                  >  2:303138/1‑140 (MQ=255)
                                                                                            cTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGAc                                  >  1:541544/1‑140 (MQ=255)
                                                                                                 gCTCGTGTCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTc                             >  2:386239/1‑140 (MQ=255)
                                                                                                     gtgtCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGAc                         <  2:521956/140‑1 (MQ=255)
                                                                                                     gtgtCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGAc                         <  2:541544/140‑1 (MQ=255)
                                                                                                     gtgtCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGAc                         <  2:106262/140‑1 (MQ=255)
                                                                                                     gtgtCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGAc                         <  1:425061/140‑1 (MQ=255)
                                                                                                     gtgtCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGAc                         <  1:290819/140‑1 (MQ=255)
                                                                                                      tgtCGCCCCCAGTTCTTCACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACg                        >  2:113152/1‑140 (MQ=255)
                                                                                                                   tcttcACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGc           <  1:213593/140‑1 (MQ=255)
                                                                                                                    cttcACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCg          <  1:525698/140‑1 (MQ=255)
                                                                                                                      tcACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACGCCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCggg        <  1:355419/140‑1 (MQ=255)
                                                                                                                       cACTGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCggac       >  2:522935/1‑138 (MQ=255)
                                                                                                                          tGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGCCACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTcc    >  1:301601/1‑140 (MQ=255)
                                                                                                                          tGACGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTcc    >  1:582135/1‑140 (MQ=255)
                                                                                                                            aCGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCAt  >  1:598126/1‑140 (MQ=255)
                                                                                                                            aCGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCAt  >  1:288805/1‑140 (MQ=255)
                                                                                                                            aCGCCT‑TTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCAt  >  1:22910/1‑140 (MQ=255)
                                                                                                                                  |                                                                                                                                      
CGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCAT  >  NC_000913/437242‑437506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A