Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F48 I1 R1	62	93.4	3176452	99.2%	3151040	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	438,373	G→T	A602D (GCC→GAC)	dxs ←	1‑deoxy‑D‑xylulose‑5‑phosphate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	438,373	0	G	T	100.0%	287.5 / NA	80	A602D (GCC→GAC)	dxs	1‑deoxy‑D‑xylulose‑5‑phosphate synthase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (38/42); total (38/42)

CGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGGCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTT  >  NC_000913/438237‑438508

cGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGtcgc                                                                                                                                      <  2:1461632/140‑1 (MQ=255)

cGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGtcgc                                                                                                                                      <  2:727527/140‑1 (MQ=255)

      ccgccTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCAttt                                                                                                                                >  1:1344409/1‑140 (MQ=255)

              cTGCAACTCGAATTATTTAGAGTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGa                                                                                                                        <  1:1153815/140‑1 (MQ=255)

                    cTCGAATTATTTAGAGTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCt                                                                                                                  >  2:771967/1‑140 (MQ=255)

                      cGAATTATTTAGAGTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTg                                                                                                                <  1:307788/140‑1 (MQ=255)

                      agAATTATTTAGAGTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTg                                                                                                                <  2:163995/139‑1 (MQ=255)

                        aaTTATTTAGAGTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCg                                                                                                              <  2:188185/140‑1 (MQ=255)

                          ttattTAGAGTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGa                                                                                                            <  2:1029588/140‑1 (MQ=255)

                              ttAGAGTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATaa                                                                                                        <  1:1338734/140‑1 (MQ=255)

                               tAGAGTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATaaa                                                                                                       <  2:494202/140‑1 (MQ=255)

                                  agTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAaagaa                                                                                                    >  2:896233/1‑140 (MQ=255)

                                   gTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAaagaag                                                                                                   <  1:1376680/140‑1 (MQ=255)

                                     cTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTc                                                                                                 >  1:499371/1‑140 (MQ=255)

                                      tATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTcc                                                                                                >  2:533902/1‑140 (MQ=255)

                                       aTGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCg                                                                                               >  1:1002261/1‑140 (MQ=255)

                                       aTGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCg                                                                                               >  1:634605/1‑140 (MQ=255)

                                       aTGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCg                                                                                               >  2:25373/1‑140 (MQ=255)

                                       aTGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCg                                                                                               >  2:172661/1‑140 (MQ=255)

                                       aTGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCg                                                                                               >  1:1102374/1‑140 (MQ=255)

                                       aTGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCg                                                                                               >  2:958741/1‑140 (MQ=255)

                                             aatTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGc                                                                                         <  1:533902/140‑1 (MQ=255)

                                              atTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGcc                                                                                        <  2:112127/140‑1 (MQ=255)

                                              atTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGcc                                                                                        >  2:277330/1‑140 (MQ=255)

                                               attCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCa                                                                                       <  2:44860/139‑1 (MQ=255)

                                                  cTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAAtt                                                                                    >  2:633133/1‑139 (MQ=255)

                                                    tAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGtt                                                                                  <  1:28985/140‑1 (MQ=255)

                                                        cATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGc                                                                              <  2:849238/140‑1 (MQ=255)

                                                        cATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGc                                                                              <  2:499371/140‑1 (MQ=255)

                                                        aaTAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGc                                                                              <  2:473306/139‑1 (MQ=255)

                                                         aTAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCa                                                                             <  1:1064380/140‑1 (MQ=255)

                                                          tAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCAc                                                                            >  2:1517908/1‑140 (MQ=255)

                                                           aGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACg                                                                           >  2:572530/1‑140 (MQ=255)

                                                           aGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACg                                                                           >  2:953850/1‑140 (MQ=255)

                                                            gCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACgg                                                                          >  2:1186103/1‑140 (MQ=255)

                                                             cAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACggg                                                                         >  2:7548/1‑140 (MQ=255)

                                                             cAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACggg                                                                         >  1:983362/1‑140 (MQ=255)

                                                               ggagtggagtAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTa                                                                       <  1:135094/140‑1 (MQ=255)

                                                               ggagtggagtAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTa                                                                       <  2:1002261/140‑1 (MQ=255)

                                                               ggagtggagtAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTa                                                                       <  1:958741/140‑1 (MQ=255)

                                                               ggagtggagtAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTa                                                                       <  1:1467361/140‑1 (MQ=255)

                                                               ggagtggagtAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTa                                                                       <  1:104806/140‑1 (MQ=255)

                                                                gagtggagtAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTAc                                                                      <  1:277330/140‑1 (MQ=255)

                                                                gagtggagtAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTAc                                                                      <  1:172661/140‑1 (MQ=255)

                                                                  gtggagtAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTg                                                                    >  2:1327686/1‑140 (MQ=255)

                                                                  gtggagtAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTg                                                                    >  1:721625/1‑140 (MQ=255)

                                                                     gagtAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGtt                                                                 >  2:889271/1‑140 (MQ=255)

                                                                       gtAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTa                                                               >  2:1392182/1‑140 (MQ=255)

                                                                          gggATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGa                                                            >  1:30986/1‑140 (MQ=255)

                                                                           ggATTATGCCATCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGAt                                                           >  2:237049/1‑140 (MQ=255)

                                                                           ggATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGAt                                                           <  2:459570/140‑1 (MQ=255)

                                                                            gATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATg                                                          <  1:899583/140‑1 (MQ=255)

                                                                             aTTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATgg                                                         >  2:290772/1‑140 (MQ=255)

                                                                             aTTATGCCAGCCAGGCCTTGATCTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATgg                                                         <  1:1327686/140‑1 (MQ=255)

                                                                               tATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGc                                                       <  2:1127805/140‑1 (MQ=255)

                                                                               tATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGc                                                       >  1:170122/1‑140 (MQ=255)

                                                                                aTGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGcc                                                      >  1:1041447/1‑140 (MQ=255)

                                                                                aTGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGcc                                                      >  1:1507330/1‑140 (MQ=255)

                                                                                aTGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGcc                                                      >  1:591411/1‑140 (MQ=255)

                                                                                 tGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCa                                                     >  2:1419137/1‑140 (MQ=255)

                                                                                 tGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCa                                                     >  1:679071/1‑140 (MQ=255)

                                                                                  gccagccaGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGGGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCAt                                                    >  2:22884/1‑140 (MQ=255)

                                                                                  gccagccaGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGCACTGGTTTACGATGGGCCAt                                                    >  1:724179/1‑140 (MQ=255)

                                                                                     agccagGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAg                                                 <  2:724179/140‑1 (MQ=255)

                                                                                        cagGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCAc                                              <  2:814836/140‑1 (MQ=255)

                                                                                                    ttGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCAcgcc                                  <  2:170122/140‑1 (MQ=255)

                                                                                                    ttGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCAcgcc                                  <  2:1168385/140‑1 (MQ=255)

                                                                                                    ttGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCAcgcc                                  <  1:458517/140‑1 (MQ=255)

                                                                                                            cATACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGctgcctg                          >  2:1362793/1‑140 (MQ=255)

                                                                                                              tACCAGCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTgcg                        <  1:889271/140‑1 (MQ=255)

                                                                                                                   gCGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCgccgcc                   <  2:1097930/140‑1 (MQ=255)

                                                                                                                    cGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGccc                  >  1:1105123/1‑140 (MQ=255)

                                                                                                                    cGGCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGccc                  >  1:1270450/1‑140 (MQ=255)

                                                                                                                     ggCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCa                 >  1:1564266/1‑140 (MQ=255)

                                                                                                                      gCATCGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCAt                >  2:302812/1‑140 (MQ=255)

                                                                                                                          cGAGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATg            <  2:721625/140‑1 (MQ=255)

                                                                                                                            aGGCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCG‑TGCCTGCGCCGCCCATAATGGCg         <  1:633133/140‑1 (MQ=255)

                                                                                                                             ggCCGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCg         <  1:953850/140‑1 (MQ=255)

                                                                                                                               ccGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGtt       <  1:416739/140‑1 (MQ=255)

                                                                                                                               ccGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGtt       <  2:1270450/140‑1 (MQ=255)

                                                                                                                               ccGAGTTCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCACCGCCCATAATGGCGtt       <  1:25373/140‑1 (MQ=255)

                                                                                                                                    ttCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTttctt  <  1:1186103/140‑1 (MQ=255)

                                                                                                                                    ttCGTCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTttctt  <  2:1344409/140‑1 (MQ=255)

CGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTCTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTTTGGCTTCCATACCAGCGGCATCGAGGCCGAGTTCGGCGCGCATTTCTTCCTGAGTTCCTTGCGGAATAAAGAAGTCCGGCAGGCCAATGTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTT  >  NC_000913/438237‑438508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A