Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A17 F48 I1 R1	90	35.3	1199032	98.5%	1181046	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	796,078	C→A	R73S (CGC→AGC)	modB →	molybdate ABC transporter membrane subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	796,078	0	C	A	100.0%	95.5 / NA	28	R73S (CGC→AGC)	modB	molybdate ABC transporter membrane subunit
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (11/17); total (11/17)

GATCTTTTTTGCCTGGTTACTGGTGCGTTGCACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGCGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTCCGCTGATGGTGCGGGCAATTCGTCTGGCGCTGGAAGGGGT  >  NC_000913/795948‑796214

gATCTTTTTTGCCTGGTTACTGGTGCGTTGCACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTa                                                                                                                                 <  1:134226/140‑1 (MQ=255)

 aTCTTTTTTGCCTGGTTACTGGTGCGTTGCACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTAt                                                                                                                                <  2:215165/140‑1 (MQ=255)

 aTCTTTTTTGCCTGGTTACTGGTGCGTTGCACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTAt                                                                                                                                <  2:521736/140‑1 (MQ=255)

    ttttttGCCTGGTTACTGGTGCGTTGCACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCgg                                                                                                                             >  2:133057/1‑140 (MQ=255)

         tGCCTGGTTACTGGTGCGTTGCACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAAc                                                                                                                        <  1:564487/140‑1 (MQ=255)

         tGCCTGGTTACTGGTGCGTTGCACGTTTCCGGGCAAAGCTCTGCTCGACAGAGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGCCGTCGGTTACTTCTTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAAc                                                                                                                        >  2:133199/1‑140 (MQ=255)

           ccTGGTTACTGGTGCGTTGCACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGTTCGTCGGTTACTTATTATTAGTTTCGATGGTACGGAGCGGATTTATCGGTGAACGt                                                                                                                      >  2:25287/1‑140 (MQ=255)

            cTGGTTACTGGTGCGTTGCACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTc                                                                                                                     <  2:245983/140‑1 (MQ=255)

                      gTGCGTTGCACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTg                                                                                                           >  1:171223/1‑140 (MQ=255)

                        gCGTTGCACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTGGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGt                                                                                                         <  2:477191/140‑1 (MQ=255)

                        gCGTTGCACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGt                                                                                                         <  2:171223/140‑1 (MQ=255)

                         cGTTGCACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGtt                                                                                                        >  1:204630/1‑140 (MQ=255)

                              cACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGtt                                                                                                   >  2:534831/1‑139 (MQ=255)

                              cACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTa                                                                                                   <  1:133057/140‑1 (MQ=255)

                              atcGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTa                                                                                                   <  2:473865/138‑1 (MQ=255)

                                                                      cTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTgc                                                           >  1:443081/1‑140 (MQ=255)

                                                                       ttccGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTgcc                                                          <  1:25287/138‑1 (MQ=255)

                                                                                       gCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTc                                          <  2:500658/140‑1 (MQ=255)

                                                                                            cggTCGTCGGTTACTTCTTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGAC‑GGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTCCGCTGa                                    >  2:398317/2‑140 (MQ=255)

                                                                                                  tcgGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTCCGCTGATGGTg                               <  1:534831/140‑1 (MQ=255)

                                                                                                  tcgGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTCCGCTGATGGTg                               <  1:321936/140‑1 (MQ=255)

                                                                                                  tcgGTTACTTATTATTAGTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTCCACTGATGGTg                               >  2:515724/1‑140 (MQ=255)

                                                                                                  acgGTTACTTATTATTAGTTACGATGGGACGGAGCGGATTTATCGGTGAACGGCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTCCGCTGATGGTg                               >  2:563625/2‑140 (MQ=255)

                                                                                                                   gTTTCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTCCGCTGATGGTGCGGGCAATTCGTCTGgc              >  1:39260/1‑140 (MQ=255)

                                                                                                                    tttCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTCCGCTGATGGTGCGGGCAATTCGTCTGgcg             >  2:15230/1‑140 (MQ=255)

                                                                                                                    tttCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTCCGCTGATGGTGCGGGCAATTCGTCTGgcg             <  1:492791/140‑1 (MQ=255)

                                                                                                                    tttCGATGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTCCGCTGATGGTGCGGGCAATTCGTCTGgcc             >  2:322910/1‑139 (MQ=255)

                                                                                                                         aTGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTCCGCTGATGGTGCGGGCAATTCGTCTGGCGCTGGa        <  2:455810/140‑1 (MQ=255)

                                                                                                                         aTGGGACGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTCCGCTGATGGTGCGGGCAATTCGTCTGGCGCTGGa        <  2:127343/140‑1 (MQ=255)

                                                                                                                               cGGAGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTCCGCTGATGGTGCGGGCAATTCGTCTGGCGCTGGAAGGGGt  <  1:563625/140‑1 (MQ=255)

GATCTTTTTTGCCTGGTTACTGGTGCGTTGCACGTTTCCGGGCAAAGCTCTGCTCGACAGCGTACTGCATCTACCGCTGGTGTTACCGCCCGTGGTCGTCGGTTACTTATTATTAGTTTCGATGGGACGGCGCGGATTTATCGGTGAACGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGCCGCCGTCATGTCGTTTCCGCTGATGGTGCGGGCAATTCGTCTGGCGCTGGAAGGGGT  >  NC_000913/795948‑796214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A