Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F48 I1 R1	75	141.5	4784044	99.1%	4740987	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	796,750	A→T	E66V (GAA→GTA)	modC →	molybdate ABC transporter ATP binding subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	796,750	0	A	T	99.0%	332.9 / ‑4.5	95	E66V (GAA→GTA)	modC	molybdate ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand): ref base A (1/0); new base T (47/47); total (48/47)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

GCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAG  >  NC_000913/796613‑796886

gttGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGtaa                                                                                                                                        <  1:977282/138‑1 (MQ=255)

 cTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGtaaa                                                                                                                                       <  2:698669/140‑1 (MQ=255)

 cTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGtaaa                                                                                                                                       <  1:560138/140‑1 (MQ=255)

 cTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGtaaa                                                                                                                                       <  1:1446779/140‑1 (MQ=255)

       gacAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCTGGTACTAAATGATGCCGTAAAAGGTAt                                                                                                                                 <  2:330186/138‑1 (MQ=255)

              gCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTg                                                                                                                          >  1:152471/1‑140 (MQ=255)

              gCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTg                                                                                                                          >  1:1226685/1‑140 (MQ=255)

               cATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGa                                                                                                                         <  2:653626/140‑1 (MQ=255)

                 tCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACg                                                                                                                       >  2:1856059/1‑140 (MQ=255)

                 tCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACg                                                                                                                       <  1:1348614/140‑1 (MQ=255)

                  cACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGc                                                                                                                      <  1:84416/140‑1 (MQ=255)

                      gCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGa                                                                                                                  <  2:151021/140‑1 (MQ=255)

                       cTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGaa                                                                                                                 >  2:2030655/1‑140 (MQ=255)

                               ggCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTcg                                                                                                         >  1:1237284/1‑140 (MQ=255)

                               ggCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTcg                                                                                                         >  1:1984773/1‑140 (MQ=255)

                                 cGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTcgcg                                                                                                       >  2:1524566/1‑140 (MQ=255)

                                 cGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTcgcg                                                                                                       >  1:1164845/1‑140 (MQ=255)

                                 cGTCTCCGATGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTcgcg                                                                                                       >  2:1137889/1‑140 (MQ=255)

                                  gTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGt                                                                                                      <  1:1971526/140‑1 (MQ=255)

                                    ctcCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTg                                                                                                    >  1:2214696/1‑140 (MQ=255)

                                    ctcCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTg                                                                                                    >  1:953037/1‑140 (MQ=255)

                                     tcCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCTGGAAAAGCGTCGCGTTgg                                                                                                   <  1:2147724/140‑1 (MQ=255)

                                     tcCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTgg                                                                                                   <  2:1984773/140‑1 (MQ=255)

                                     tcCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTgg                                                                                                   <  1:387465/140‑1 (MQ=255)

                                       cGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCt                                                                                                 <  1:879814/140‑1 (MQ=255)

                                        ggTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTa                                                                                                <  1:2030655/140‑1 (MQ=255)

                                        ggTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTa                                                                                                <  2:152471/140‑1 (MQ=255)

                                          tGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATg                                                                                              <  2:31878/140‑1 (MQ=255)

                                               gAAAAACTTCGCTGATTAAGGGCATCAGTGGAGTGACACTCCCGGAAAAAGTGCGGATTGTCCGCAATGGGCGGGGACTAAATGATGCCGTATAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGGTGGCTATGttttt                                                                                         >  1:2246661/1‑140 (MQ=255)

                                               gAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGttttt                                                                                         >  2:1953486/1‑140 (MQ=255)

                                               gAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGttttt                                                                                         >  2:1619408/1‑140 (MQ=255)

                                                   aaCTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAgg                                                                                     <  2:1049989/140‑1 (MQ=255)

                                                      ttCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATg                                                                                  <  2:1237284/140‑1 (MQ=255)

                                                           tGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCgg                                                                             <  1:4583/140‑1 (MQ=255)

                                                               tAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGTTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGt                                                                         <  2:1804613/140‑1 (MQ=255)

                                                               tAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGt                                                                         <  1:1950445/140‑1 (MQ=255)

                                                                 aCGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTc                                                                       <  1:570118/140‑1 (MQ=255)

                                                                  cGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTcc                                                                      >  1:2218562/1‑140 (MQ=255)

                                                                   gCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTccc                                                                     <  1:383588/140‑1 (MQ=255)

                                                                   gCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTccc                                                                     <  1:1300271/140‑1 (MQ=255)

                                                                   gCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTccc                                                                     <  1:121130/140‑1 (MQ=255)

                                                                   gCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTccc                                                                     <  1:1555795/140‑1 (MQ=255)

                                                                   gCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTccc                                                                     <  2:1226685/140‑1 (MQ=255)

                                                                    ccATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCg                                                                    <  1:1856059/140‑1 (MQ=255)

                                                                      aTCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCa                                                                  <  2:1393695/140‑1 (MQ=255)

                                                                       tCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCAt                                                                 >  2:524011/1‑140 (MQ=255)

                                                                       tCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCAt                                                                 >  1:1206641/1‑140 (MQ=255)

                                                                       tCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCAt                                                                 >  2:1401978/1‑140 (MQ=255)

                                                                         aGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTa                                                               >  1:603000/1‑140 (MQ=255)

                                                                           tGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACa                                                             >  2:452566/1‑140 (MQ=255)

                                                                           tGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACa                                                             <  1:202378/140‑1 (MQ=255)

                                                                             gACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACaaa                                                           >  2:2094044/1‑140 (MQ=255)

                                                                               cTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGt                                                         <  2:2372892/140‑1 (MQ=255)

                                                                                 gACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGc                                                       >  2:361332/1‑140 (MQ=255)

                                                                                  aCGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTccc                                                                     <  2:29904/125‑1 (MQ=255)

                                                                                  aCGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTccc                                                                     >  1:29904/1‑125 (MQ=255)

                                                                                  aCGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACa                                                             >  2:377736/1‑133 (MQ=255)

                                                                                  aCGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACa                                                             <  1:377736/133‑1 (MQ=255)

                                                                                  aCGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGct                                                      >  2:741666/1‑139 (MQ=255)

                                                                                  aCGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGct                                                      >  2:1835280/1‑139 (MQ=255)

                                                                                  aCGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCg                                                      >  2:2346696/1‑140 (MQ=255)

                                                                                   cgcgCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGt                                                     >  2:816198/1‑140 (MQ=255)

                                                                                       cccGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCa                                                 >  2:1531508/1‑140 (MQ=255)

                                                                                       cccGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCa                                                 >  2:880453/1‑140 (MQ=255)

                                                                                         cGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAAt                                               <  1:2094044/140‑1 (MQ=255)

                                                                                         cGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAAt                                               <  1:1340003/140‑1 (MQ=255)

                                                                                            aaaaaGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTg                                            >  2:1438991/1‑140 (MQ=255)

                                                                                                    cGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACgg                                    <  1:1619408/140‑1 (MQ=255)

                                                                                                    cGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACgg                                    >  1:1405093/1‑140 (MQ=255)

                                                                                                     ggATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGc                                   <  1:880453/140‑1 (MQ=255)

                                                                                                      gATTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCa                                  <  1:1438991/140‑1 (MQ=255)

                                                                                                       aTTGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCAt                                 <  1:1401978/140‑1 (MQ=255)

                                                                                                        ttGTCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATg                                <  1:1524566/140‑1 (MQ=255)

                                                                                                           tCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCg                             <  1:570959/140‑1 (MQ=255)

                                                                                                           tCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCg                             >  1:893495/1‑140 (MQ=255)

                                                                                                           tCCTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCg                             <  1:1137889/140‑1 (MQ=255)

                                                                                                             cTCAATGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGaa                           <  1:99783/140‑1 (MQ=255)

                                                                                                                aaTGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAg                        <  2:2214696/140‑1 (MQ=255)

                                                                                                                  tGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTa                      >  2:216234/1‑140 (MQ=255)

                                                                                                                  tGGGCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTa                      <  2:1206641/140‑1 (MQ=255)

                                                                                                                   gggCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTAt                     >  2:1737135/1‑140 (MQ=255)

                                                                                                                     gCGGGTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATgg                   >  1:1658565/1‑140 (MQ=255)

                                                                                                                     gCGGGGACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATgg                   >  2:2365736/1‑140 (MQ=255)

                                                                                                                        ggTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCg                <  1:452566/140‑1 (MQ=255)

                                                                                                                         gTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGa               <  1:91849/140‑1 (MQ=255)

                                                                                                                         gTACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGa               >  1:1224720/1‑140 (MQ=255)

                                                                                                                          tACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGAt              <  2:2347818/140‑1 (MQ=255)

                                                                                                                          tACTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGAt              >  1:796393/1‑140 (MQ=255)

                                                                                                                           aCTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATc             <  1:2312347/140‑1 (MQ=255)

                                                                                                                            cTAAATGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCa            <  2:953037/140‑1 (MQ=255)

                                                                                                                               aaTGATGCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGtt         >  2:1084787/1‑140 (MQ=255)

                                                                                                                                   atgCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCATTCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGAt     >  1:938218/1‑140 (MQ=255)

                                                                                                                                   atgCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGAt     >  2:2204701/1‑140 (MQ=255)

                                                                                                                                   atgCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGAt     >  2:1617245/1‑140 (MQ=255)

                                                                                                                                   atgCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGAt     >  2:859513/1‑140 (MQ=255)

                                                                                                                                    tgCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATa    >  2:2284743/1‑140 (MQ=255)

                                                                                                                                    tgCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATa    >  1:953621/1‑140 (MQ=255)

                                                                                                                                    tgCCGTAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATa    >  1:101324/1‑140 (MQ=255)

                                                                                                                                      ccGTAAAGGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAg  >  1:1783440/1‑140 (MQ=255)

GCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAG  >  NC_000913/796613‑796886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A