Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	796,755	G→T	G68C (GGT→TGT)	modC →	molybdate ABC transporter ATP binding subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	796,755	0	G	T	97.5%	252.1 / 0.7	80	G68C (GGT→TGT)	modC	molybdate ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand): ref base G (1/1); new base T (38/40); total (39/41)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.19e-01

GCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTG  >  NC_000913/796620‑796889

gCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTAt                                                                                                                                    <  1:2027750/140‑1 (MQ=255)

      ggCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCt                                                                                                                              <  2:1087480/140‑1 (MQ=255)

      ggCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCt                                                                                                                              <  2:1433493/140‑1 (MQ=255)

      ggCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACAAAATGATGCCGAAAAATGTATCTGCCt                                                                                                                              <  1:1745438/140‑1 (MQ=255)

           cACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGc                                                                                                                         >  1:2096356/1‑140 (MQ=255)

                  aTCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGaaaa                                                                                                                  >  1:2045890/1‑140 (MQ=255)

                  aTCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGaaaa                                                                                                                  >  1:421843/1‑140 (MQ=255)

                   tCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAg                                                                                                                 >  2:1645563/1‑140 (MQ=255)

                     tttGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCg                                                                                                               >  1:1069134/1‑140 (MQ=255)

                       tGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTc                                                                                                             >  2:1905673/1‑140 (MQ=255)

                        ggCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTct                                                                                                            >  2:767479/1‑139 (MQ=255)

                        ggCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTcg                                                                                                            >  2:1322715/1‑140 (MQ=255)

                         gCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTcgc                                                                                                           <  1:1645563/140‑1 (MQ=255)

                         gCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTcgc                                                                                                           <  2:1485716/140‑1 (MQ=255)

                         gCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTcgc                                                                                                           <  1:676985/140‑1 (MQ=255)

                         gCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTcgc                                                                                                           <  2:2096356/140‑1 (MQ=255)

                          ggTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTcgcg                                                                                                          <  2:224916/139‑1 (MQ=255)

                             ctcCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGttt                                                                                                       >  2:1096207/1‑139 (MQ=255)

                             ctcCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTg                                                                                                       >  1:617287/1‑140 (MQ=255)

                              tcCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTgg                                                                                                      >  2:2139268/1‑140 (MQ=255)

                                cGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCt                                                                                                    <  1:717003/140‑1 (MQ=255)

                                cGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCt                                                                                                    <  2:1688307/140‑1 (MQ=255)

                                cGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCt                                                                                                    <  2:2045890/140‑1 (MQ=255)

                                cGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCt                                                                                                    <  1:450197/140‑1 (MQ=255)

                                 ggTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGGCGCGTTGGCTa                                                                                                   <  1:1269798/140‑1 (MQ=255)

                                  gTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTAt                                                                                                  <  1:2139268/140‑1 (MQ=255)

                                   tGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATg                                                                                                 <  1:1322715/140‑1 (MQ=255)

                                             aCTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTgg                                                                                                      >  2:1821770/1‑125 (MQ=255)

                                             aCTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTgg                                                                                                      <  1:1821770/125‑1 (MQ=255)

                                                 cGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGGTTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATgcg                                                                                   <  2:703652/140‑1 (MQ=255)

                                                  gCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATgcgc                                                                                  <  2:421843/140‑1 (MQ=255)

                                                    tGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCgg                                                                                <  2:617287/140‑1 (MQ=255)

                                                           cGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTcc                                                                         <  1:1821879/140‑1 (MQ=255)

                                                            gCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTTTTccc                                                                        <  2:1937234/140‑1 (MQ=255)

                                                            gCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTccc                                                                        <  1:2137853/140‑1 (MQ=255)

                                                            gCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTccc                                                                        <  2:1643499/140‑1 (MQ=255)

                                                             ccATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATATATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCg                                                                       <  2:683896/140‑1 (MQ=255)

                                                                tCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGGGTAGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCAt                                                                    >  2:218200/1‑140 (MQ=255)

                                                                tCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCAt                                                                    <  2:1069134/140‑1 (MQ=255)

                                                                tCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCAt                                                                    >  1:1244172/1‑140 (MQ=255)

                                                                    tGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACa                                                                <  1:1032293/140‑1 (MQ=255)

                                                                    tGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACa                                                                <  2:591858/140‑1 (MQ=255)

                                                                      gACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCACTGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACaaa                                                              >  2:948110/1‑140 (MQ=255)

                                                                           aCGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCa                                                                     >  2:385491/1‑128 (MQ=255)

                                                                           aCGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCa                                                                     <  1:385491/128‑1 (MQ=255)

                                                                           aCGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACaaa                                                              <  1:1750045/135‑1 (MQ=255)

                                                                           aCGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACaaa                                                              >  2:1750045/1‑135 (MQ=255)

                                                                           aCGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGct                                                         >  2:748471/1‑139 (MQ=255)

                                                                           aCGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCg                                                         >  2:1233620/1‑140 (MQ=255)

                                                                            cgcgCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGt                                                        >  1:828845/1‑140 (MQ=255)

                                                                             gcgcCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAagtgagtg                                                       <  1:218200/140‑1 (MQ=255)

                                                                              cgcCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTgg                                                      >  2:1911595/1‑140 (MQ=255)

                                                                              cgcCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTgg                                                      >  2:34197/1‑140 (MQ=255)

                                                                                cccGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCa                                                    >  2:665688/1‑140 (MQ=255)

                                                                                  cGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAAt                                                  <  2:654347/140‑1 (MQ=255)

                                                                                  cGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAAt                                                  <  2:34490/140‑1 (MQ=255)

                                                                                  cGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAAt                                                  <  1:1233620/140‑1 (MQ=255)

                                                                                       agaGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGGTATGTTTTTCAGGAGGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTgcg                                             <  1:2062692/138‑1 (MQ=255)

                                                                                              ggATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGc                                      <  2:1942527/140‑1 (MQ=255)

                                                                                                    tCCTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCg                                <  2:828845/140‑1 (MQ=255)

                                                                                                     ccTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTg                                               >  1:699683/1‑124 (MQ=255)

                                                                                                     ccTCAATGGGCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTg                                               <  2:699683/124‑1 (MQ=255)

                                                                                                             ggCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATg                       >  2:935674/1‑140 (MQ=255)

                                                                                                              gCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATgg                      >  1:303740/1‑140 (MQ=255)

                                                                                                              gCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATgg                      >  1:317135/1‑140 (MQ=255)

                                                                                                              gCGGGTACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATgg                      >  1:505269/1‑140 (MQ=255)

                                                                                                              gCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATgg                      >  1:1518081/1‑140 (MQ=255)

                                                                                                                   tACTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGAt                 >  2:585278/1‑140 (MQ=255)

                                                                                                                    aCTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATc                <  1:748471/140‑1 (MQ=255)

                                                                                                                    aCTAAATGATGCCGAAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATc                <  2:1518081/140‑1 (MQ=255)

                                                                                                                     cTAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCa               <  1:1426973/140‑1 (MQ=255)

                                                                                                                     atAAATGATGCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTAAAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCa               <  2:1986593/139‑1 (MQ=255)

                                                                                                                            atgCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGAt        >  1:401343/1‑140 (MQ=255)

                                                                                                                             tgCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATa       >  1:250522/1‑140 (MQ=255)

                                                                                                                             tgCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTT‑CCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATaa      >  1:576288/1‑140 (MQ=255)

                                                                                                                             tgCCGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGAGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATa       >  1:1403433/1‑140 (MQ=255)

                                                                                                                                cGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAgt    >  2:633352/1‑139 (MQ=255)

                                                                                                                                cGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAgt    >  2:1666230/1‑139 (MQ=255)

                                                                                                                                cGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGc    >  1:316408/1‑140 (MQ=255)

                                                                                                                                cGAAAAATGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGc    >  1:2045046/1‑140 (MQ=255)

                                                                                                                                  aaaaaTGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCtt  >  2:610921/1‑139 (MQ=255)

GCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGCCGGAAAAGCGTCGCGTTGGCTATGTTTTTCAGGATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTG  >  NC_000913/796620‑796889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A