Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F48 I1 R1	75	141.5	4784044	99.1%	4740987	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	117,261	G→T	Q97K (CAA→AAA)	ppdD ←	prepilin peptidase‑dependent protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	117,261	0	G	T	100.0%	432.9 / NA	119	Q97K (CAA→AAA)	ppdD	prepilin peptidase‑dependent protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (55/64); total (55/64)

Only 100 of 123 total aligned reads displayed.

AAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTACGGC  >  NC_000913/117124‑117396

aaaGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTcc                                                                                                                                       <  1:1646973/140‑1 (MQ=255)

       aaGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAg                                                                                                                                >  2:1532372/1‑140 (MQ=255)

        aGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGc                                                                                                                               <  2:39207/140‑1 (MQ=255)

          aCATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGa                                                                                                                             <  2:1609227/140‑1 (MQ=255)

              cTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGAcacc                                                                                                                         >  1:473959/1‑140 (MQ=255)

               ttCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGAcacca                                                                                                                        <  2:620932/140‑1 (MQ=255)

                 cGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACg                                                                                                                      <  2:422254/140‑1 (MQ=255)

                 cGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACg                                                                                                                      >  2:634361/1‑140 (MQ=255)

                   cAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGcc                                                                                                                    >  2:1687156/1‑140 (MQ=255)

                   cAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGcc                                                                                                                    <  1:1673574/140‑1 (MQ=255)

                   cAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGcc                                                                                                                    <  1:1834222/140‑1 (MQ=255)

                    aGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGccc                                                                                                                   >  1:605157/1‑140 (MQ=255)

                    aGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGccc                                                                                                                   >  2:581952/1‑140 (MQ=255)

                     ggCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCt                                                                                                                  >  2:2028793/1‑140 (MQ=255)

                        ttGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTg                                                                                                               >  1:647771/1‑140 (MQ=255)

                         tgctgcAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGc                                                                                                              >  2:1854248/1‑140 (MQ=255)

                         tgctgcAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGc                                                                                                              >  1:1605041/1‑140 (MQ=255)

                          gctgcAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGcc                                                                                                             <  2:1439916/140‑1 (MQ=255)

                          gctgcAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGcc                                                                                                             <  2:359057/140‑1 (MQ=255)

                          gctgcAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGcc                                                                                                             <  1:1248474/140‑1 (MQ=255)

                           ctgcAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCca                                                                                                            <  1:1532372/140‑1 (MQ=255)

                                aTGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTc                                                                                                       <  1:1086811/140‑1 (MQ=255)

                                aTGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTc                                                                                                       <  2:473959/140‑1 (MQ=255)

                                aTGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTc                                                                                                       >  2:1086811/1‑140 (MQ=255)

                                aTGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTc                                                                                                       >  2:66120/1‑140 (MQ=255)

                                aTGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTc                                                                                                       >  2:739756/1‑140 (MQ=255)

                                 tGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCa                                                                                                      <  2:2330891/140‑1 (MQ=255)

                                  gcgcTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCAt                                                                                                     <  1:997035/140‑1 (MQ=255)

                                  gcgcTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCAt                                                                                                     <  1:725076/140‑1 (MQ=255)

                                  gcgcTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCAt                                                                                                     <  2:535102/140‑1 (MQ=255)

                                    gcTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATgg                                                                                                   <  1:2022105/140‑1 (MQ=255)

                                        tCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGa                                                                                               >  2:871057/1‑140 (MQ=255)

                                          aCTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGaaa                                                                                             <  1:804625/140‑1 (MQ=255)

                                           cTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAAc                                                                                            >  2:2219936/1‑140 (MQ=255)

                                                  aatTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTAGCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACACATGGCTGAAACATAGCgg                                                                                     <  1:1982465/139‑1 (MQ=255)

                                                   atTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCggg                                                                                    <  2:605157/140‑1 (MQ=255)

                                                   atTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCggg                                                                                    <  1:354564/140‑1 (MQ=255)

                                                   atTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCggg                                                                                    <  1:108954/140‑1 (MQ=255)

                                                    ttGCAGTTTCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGggt                                                                                   <  1:206885/140‑1 (MQ=255)

                                                    ttGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATTACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGggt                                                                                   <  2:18544/140‑1 (MQ=255)

                                                    ttGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGggt                                                                                   >  1:3178/1‑140 (MQ=255)

                                                     tGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGggtg                                                                                  >  1:1007329/1‑140 (MQ=255)

                                                     tGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGggtg                                                                                  >  2:1773153/1‑140 (MQ=255)

                                                      gCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGggtgg                                                                                 <  2:604936/140‑1 (MQ=255)

                                                      gCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGggtgg                                                                                 >  1:868366/1‑140 (MQ=255)

                                                        aGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGggtggtg                                                                               <  2:1605041/140‑1 (MQ=255)

                                                        aGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGggtggtg                                                                               <  1:2219936/140‑1 (MQ=255)

                                                         gTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGggtggtgg                                                                              <  1:1854248/140‑1 (MQ=255)

                                                          ttGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGggtggtggt                                                                             >  2:1361008/1‑140 (MQ=255)

                                                          ttGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGggtggtggt                                                                             <  1:116932/140‑1 (MQ=255)

                                                          ttGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGggtggtggt                                                                             >  1:450102/1‑140 (MQ=255)

                                                              gcgTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGc                                                                         <  1:2224306/140‑1 (MQ=255)

                                                              gcgTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGc                                                                         <  2:2262332/140‑1 (MQ=255)

                                                               cgTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCg                                                                        <  1:1472639/140‑1 (MQ=255)

                                                               cgTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCg                                                                        >  1:1267098/1‑140 (MQ=255)

                                                                 tCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAg                                                                      >  1:258008/1‑140 (MQ=255)

                                                                  ccAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAgg                                                                     >  2:2214512/1‑140 (MQ=255)

                                                                       cGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATg                                                                <  1:2028793/140‑1 (MQ=255)

                                                                       cGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATg                                                                >  1:528049/1‑140 (MQ=255)

                                                                          tGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCa                                                             >  1:2107778/1‑140 (MQ=255)

                                                                            aCGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCAtt                                                           >  2:2042045/1‑140 (MQ=255)

                                                                            aCGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCAtt                                                           >  2:307241/1‑140 (MQ=255)

                                                                                         tATCCCAACCCGGTGTCATGACGACGCTTAGGCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCAATTGCTGCCACCGTCg                                              <  1:893896/140‑1 (MQ=255)

                                                                                         tATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCg                                              <  2:743281/140‑1 (MQ=255)

                                                                                         tATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCAACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCg                                              <  2:1186037/140‑1 (MQ=255)

                                                                                          aTCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGc                                             <  2:2021616/140‑1 (MQ=255)

                                                                                           tCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCa                                            <  1:723833/140‑1 (MQ=255)

                                                                                              cAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGt                                         <  2:890818/140‑1 (MQ=255)

                                                                                              cAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGt                                         <  1:582662/140‑1 (MQ=255)

                                                                                                aCCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTAt                                       >  2:1253743/1‑140 (MQ=255)

                                                                                                aCCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTAt                                       >  2:1133781/1‑140 (MQ=255)

                                                                                                aCCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTAt                                       >  1:208213/1‑140 (MQ=255)

                                                                                                 cccGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATc                                      <  1:247912/140‑1 (MQ=255)

                                                                                                     gtgtCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAAt                                  >  2:1118882/1‑140 (MQ=255)

                                                                                                     gtgtCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAAt                                  >  1:1691604/1‑140 (MQ=255)

                                                                                                     gtgtCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAAt                                  >  1:632054/1‑140 (MQ=255)

                                                                                                      tgtCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTAt                                       <  2:1962783/134‑1 (MQ=255)

                                                                                                      tgtCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTAt                                       >  1:1962783/1‑134 (MQ=255)

                                                                                                      tgtCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATc                                 >  1:2092938/1‑140 (MQ=255)

                                                                                                      tgtCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATc                                 >  1:1731010/1‑140 (MQ=255)

                                                                                                      tgtCATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATc                                 >  2:1714642/1‑140 (MQ=255)

                                                                                                         cATGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATccac                              >  2:2291994/1‑140 (MQ=255)

                                                                                                           tGACGACGCTTAGCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATccacca                            >  1:1352756/1‑140 (MQ=255)

                                                                                                                       gCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAgcgcg                >  1:386182/1‑140 (MQ=255)

                                                                                                                       gCCCATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAgcgcg                <  2:3178/140‑1 (MQ=255)

                                                                                                                         ccATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGca              <  1:2237599/140‑1 (MQ=255)

                                                                                                                         ccATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGca              <  1:63311/140‑1 (MQ=255)

                                                                                                                          cATTGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGcac             <  2:1007329/140‑1 (MQ=255)

                                                                                                                            ttGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACaa           >  1:2094780/1‑140 (MQ=255)

                                                                                                                            ttGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACaa           >  1:1005444/1‑140 (MQ=255)

                                                                                                                             tGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAAc          >  1:133654/1‑140 (MQ=255)

                                                                                                                             tGAGACTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAAc          >  2:901819/1‑140 (MQ=255)

                                                                                                                                 aCTTTCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTa      <  1:2291994/140‑1 (MQ=255)

                                                                                                                                  ctttctttCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTAc     <  1:2214512/140‑1 (MQ=255)

                                                                                                                                  ctttctttCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTAc     >  1:67414/1‑140 (MQ=255)

                                                                                                                                    ttCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAATATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTAcgg   <  2:74429/140‑1 (MQ=255)

                                                                                                                                    ttCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTAcgg   <  2:547773/140‑1 (MQ=255)

                                                                                                                                    ttCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTAcgg   <  2:208213/140‑1 (MQ=255)

                                                                                                                                     tCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTAcggc  >  2:1312404/1‑140 (MQ=255)

                                                                                                                                     tCTTTCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTAcggc  >  2:891162/1‑140 (MQ=255)

AAAGCGGAAGACATCTTCGCAGGCTTGCTGCAATGCGCTGTCACTTTGAATATTGCAGTTGCGCGTCCAGCCGGTGACGCCGTTTGCGTTATCCCAACCCGGTGTCATGACGACGCTTAGCCCATTGAGACTTTCTTGCCCGGTCAGCGACACCACGCCCTTTGCCACACTCATGGCTGAAACATAGCGGGTGGTGGTAGGCGAGGGAATGCCATTGCTGCCACCGTCGCAGGTATCTAATCCACCATGTTCCAGCGCGCACAACTCTACGGC  >  NC_000913/117124‑117396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A