Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F48 I1 R1
|
115 |
87.5 |
3003888 |
99.1% |
2976853 |
139.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
119,401 |
G→T |
G41W (GGG→TGG) |
ampE → |
protein AmpE |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 119,401 | 0 | G | T | 100.0%
| 218.6
/ NA
| 62 | G41W (GGG→TGG) | ampE | protein AmpE |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (5/57); total (5/57) |
GTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCGGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCA > NC_000913/119264‑119532
|
gTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCtgg > 1:740375/1‑140 (MQ=255)
gTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAACATTTTTCTCTCtgg > 1:196716/1‑140 (MQ=255)
cAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGgcg < 2:223602/140‑1 (MQ=255)
cAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGgcg < 1:448691/140‑1 (MQ=255)
cAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGgcg < 1:1456293/140‑1 (MQ=255)
cAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGgcg < 1:1379015/140‑1 (MQ=255)
cAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGgcg < 1:1200543/140‑1 (MQ=255)
cAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGgcg < 2:740375/140‑1 (MQ=255)
aaGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGgcg < 2:411271/139‑1 (MQ=255)
aaGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGgcg < 2:1136202/139‑1 (MQ=255)
cAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAACAATTTTTTCTCTGGCGCAc > 2:723335/1‑140 (MQ=255)
aGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGt < 1:506715/140‑1 (MQ=255)
aGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGt < 1:17737/140‑1 (MQ=255)
acaacaTGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGc < 1:282271/140‑1 (MQ=255)
aacaTGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑t < 2:1069360/140‑1 (MQ=255)
aacaTGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑t < 2:198610/140‑1 (MQ=255)
aacaTGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑t < 2:1263455/140‑1 (MQ=255)
aacaTGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑t < 1:393520/140‑1 (MQ=255)
aTGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACTTTAGGCA‑TGAc < 2:1181057/140‑1 (MQ=255)
aTGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGAc < 1:524238/140‑1 (MQ=255)
aCGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGGAACATTTTTTTCTCTTGCGCCCGTTAGGCA‑TGACCat > 2:442464/1‑140 (MQ=255)
gCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCatta < 1:723335/140‑1 (MQ=255)
gCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGGAACATTTTTTTTTCTTGCGCCCGCTAGGCA‑TTACCattt > 2:1141132/1‑139 (MQ=255)
gCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAACAATTTTTTCTCTGGGGCACCGTAAGCA‑TGACCattt > 1:43245/1‑139 (MQ=255)
tATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGGAACAATTTTTTTTTTTGGGCCCGTTTGGCA‑TTACCattatt > 2:1400554/1‑140 (MQ=255)
tACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTTTCTCTGGCGCACGTTAGGCA‑TGACCATTATTTCGGTGGGGGTg > 1:1080254/1‑140 (MQ=255)
tACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTTTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTg > 1:1310098/1‑140 (MQ=255)
tACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTg > 1:1028900/1‑140 (MQ=255)
tACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAACATTTTTTTTTCTCGCGCCCGTTCGGCA‑TGACCCTTATTTGGATGGGGGtt > 2:5008/1‑139 (MQ=255)
tACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAAAATTTTTTTCTCTGGCGCCCGTTTGTGA‑TTACCATTTTTTTGATGGGCGtt > 2:67726/1‑139 (MQ=255)
cTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGAc > 1:438847/1‑140 (MQ=255)
cTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGGAAAAATTTTCTTTTTTGCGCGCGTTTGGCC‑TGTACATTTTTTCGGTGGGGGTGat > 2:1369304/1‑139 (MQ=255)
cTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAACATTTTTTTCTCTGGCGCACGTTAGGCA‑TGACCATTATTTCGATGGGGGTggc > 1:1264017/1‑138 (MQ=255)
cTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAACAATTTTTTCTCTGGCGCACGGTAGGCA‑TTACCATTATTGCGGTGGGGGTTAc > 2:609382/1‑140 (MQ=255)
gtTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGACAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGGAACATTTTTTTCTTTTGCGCCAGCTTGGCA‑TGCCCATTTTTTCGGTGGGTGTGTCttttt > 2:1133756/1‑140 (MQ=255)
ttAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACtttttt > 1:623126/1‑140 (MQ=255)
ttAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAACATTTTTCTTTCTGGCGCACGTTTGGGC‑TGTCCATTTTTGTGATTGGGGTGACtttttt > 2:5353/1‑140 (MQ=255)
ttAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAAAATTTTTTTCTTTGGCGCACGTTAGGCA‑TTACCATTATTTGGATGGGCGGTACtttttt > 2:179015/1‑140 (MQ=255)
tAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTa < 1:496419/140‑1 (MQ=255)
tAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTa < 1:567851/140‑1 (MQ=255)
tAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTa < 2:438847/140‑1 (MQ=255)
tAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGATGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTa < 2:284345/140‑1 (MQ=255)
aaTTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAACATTTTTTTCTCTTGCGCCCGTTAGGCA‑TGACCATTATTGCGGTGGGCGTGGCtttttttt > 2:1488599/1‑138 (MQ=255)
cGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTTTTTCTTGCGCACCGTAGGCA‑TGACCCTTATTTCGATGGGCGGGTCTTTTTTTCTGtttt > 2:383334/1‑138 (MQ=255)
aGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTAcgc < 2:1357675/140‑1 (MQ=255)
gcgcCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTAcgcg < 1:179015/140‑1 (MQ=255)
cgcCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACgcgc < 2:303462/140‑1 (MQ=255)
cgcCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACgcgc < 1:213678/140‑1 (MQ=255)
gcCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCa < 2:1286867/140‑1 (MQ=255)
gcCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCa < 1:1488599/140‑1 (MQ=255)
gcCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCa < 1:1141132/140‑1 (MQ=255)
cTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCAtt < 1:214201/140‑1 (MQ=255)
cTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCAtt < 1:442464/140‑1 (MQ=255)
tAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAgg < 1:1400554/140‑1 (MQ=255)
tAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAgg < 1:5008/140‑1 (MQ=255)
tAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAgg < 2:659194/140‑1 (MQ=255)
tGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAACATTTTTCTCTCTGGCGCACGGTAGGGA‑TTAACATTATTGTGATGGGCGTGGCTTTTTTTCTGTTACGCGCATTGCAGGGAGtt > 2:108538/1‑139 (MQ=255)
gggCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTAt < 1:240899/140‑1 (MQ=255)
gggCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGGAACATTTTTTTTTCTGGCGCCCGTTAGGGATTGACC‑TTATTGGGATGGGGGTGGCTTTTTTTCTGTTTCCCGGATTTCAggggggat > 2:145097/1‑135 (MQ=255)
ggCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGTGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTAtt > 1:214636/1‑140 (MQ=255)
ggCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTTTTTTGGGCTCGTTTGGCT‑TAGCCCTTATTGCGAAGGGCGTGGCTTTTTTTTTTTTCCGCTCATTGCCGGGatcatt > 2:115081/1‑135 (MQ=255)
gCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTAcgcg > 1:497819/1‑123 (MQ=255)
gCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTAcgcg < 2:497819/123‑1 (MQ=255)
gCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGGATTg > 1:1326069/1‑140 (MQ=255)
cACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCaa < 1:701590/140‑1 (MQ=255)
aCTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAAAATTTTTTTCTCTGGCGCACGGTAGGCA‑TGACCCTTATTGCGATGGGGGTGACTTTTTTTCTTTTACGCGCATTGCAGGGGGTATTTTTCAAc > 2:1331792/1‑140 (MQ=255)
gCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTc < 1:609382/140‑1 (MQ=255)
gCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAACATTTTTTTCTCTGGCGCACGTTAGGGA‑TGACCCTTATTGTGATGGGCGTGACTTTTTTACTGTTACGCGCATTTCAGGGGGGATTTTTTAACGttt > 2:1246019/1‑139 (MQ=255)
cAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTcc < 2:623126/140‑1 (MQ=255)
gCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCa < 2:43245/140‑1 (MQ=255)
gCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCa < 2:995325/140‑1 (MQ=255)
gCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCa < 2:193819/140‑1 (MQ=255)
gCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCa < 2:1326069/140‑1 (MQ=255)
gCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCa < 1:1133756/140‑1 (MQ=255)
gCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCa < 1:1369304/140‑1 (MQ=255)
cTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCAc < 1:17649/140‑1 (MQ=255)
tGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCACGc < 1:1246019/140‑1 (MQ=255)
gATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCACGCt < 2:214942/140‑1 (MQ=255)
tcGTCTTGAAGCGTTCTTTCGGCGGGGGGAACATTTTTCTCTCTGGCGCGCGGTTGGCA‑TGACCATTATTGCGGTGGGCGTGACTTTTTTTCTGTTTCGCGCATTTCAGGGAGTATTGTTTAACGTTTCCACGCTACTgg > 2:244504/1‑140 (MQ=255)
cTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTTTTTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTTCTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCACGCTACTGGtgtg > 1:1279360/1‑140 (MQ=255)
cGTTCTTTCGGCGGGGGAAAAATTTTTTTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGGGTGACTTTTTTTCTGTTTCGCGCCTTTCAGGGGGGATTGTTCAACGTTCCCACGCTACTGGTGTGGctgctg > 2:252994/1‑140 (MQ=255)
ttCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGt < 2:195916/140‑1 (MQ=255)
ttCGGCGGGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGt < 1:115081/140‑1 (MQ=255)
ggcggGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTg < 1:67726/140‑1 (MQ=255)
ggggTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCt < 1:5353/139‑1 (MQ=255)
cggGTGAAACATTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCt < 2:1028900/140‑1 (MQ=255)
aTTTTTCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTG‑TCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGgcg < 1:1066650/140‑1 (MQ=255)
tttttCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGgcg < 1:1216365/140‑1 (MQ=255)
tttttCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGgcg < 1:145097/140‑1 (MQ=255)
tttttCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGgcg < 1:244504/140‑1 (MQ=255)
tttCTCTCTGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCa > 2:1478090/1‑140 (MQ=255)
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GTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCGGGCGCACGTTAGGCA‑TGACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATTGTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCA > NC_000913/119264‑119532
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
