Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F48 I1 R1	62	147.6	5031800	99.1%	4986513	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	123,007	G→T	intergenic (+151/‑10)	pdhR → / → aceE	DNA‑binding transcriptional dual regulator PdhR/pyruvate dehydrogenase E1 component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	123,007	0	G	T	100.0%	467.7 / NA	129	intergenic (+151/‑10)	pdhR/aceE	DNA‑binding transcriptional dual regulator PdhR/pyruvate dehydrogenase E1 component
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (73/56); total (73/56)

Only 100 of 129 total aligned reads displayed.

AAAATTATCCAGAAGATGTTGTAAATCAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCT  >  NC_000913/122871‑123142

  aaTTATCCAGAAGATGTTGTAAATCAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATa                                                                                                                                    <  2:1611201/140‑1 (MQ=255)

     tATCCAGAAGATGTTGTAAATCAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAAcc                                                                                                                                 <  2:340266/140‑1 (MQ=255)

     tATCCAGAAGATGTTGTAAATCAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAAcc                                                                                                                                 <  2:378601/140‑1 (MQ=255)

       tCCAGAAGATGTTGTAAATCAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCa                                                                                                                               >  1:1920114/1‑140 (MQ=255)

       tCCAGAAGATGTTGTAAATCAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCa                                                                                                                               >  1:1440558/1‑140 (MQ=255)

       tCCAGAAGATGTTGTAAATCAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCa                                                                                                                               <  2:408328/140‑1 (MQ=255)

            aagaTGTTGTAAATCAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCa                                                                                                                          >  1:1066813/1‑140 (MQ=255)

            aagaTGTTGTAAATCAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCa                                                                                                                          >  1:294891/1‑140 (MQ=255)

               aTGTTGTAAATCAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGaa                                                                                                                       >  2:2280902/1‑140 (MQ=255)

                    gtAAATCAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGttt                                                                                                                  <  1:2494994/140‑1 (MQ=255)

                     tAAATCAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCATAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTc                                                                                                                 >  2:948302/1‑140 (MQ=255)

                      aaaTCAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTcc                                                                                                                <  2:1920114/140‑1 (MQ=255)

                          cAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCaaa                                                                                                            <  1:2231844/140‑1 (MQ=255)

                          cAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCaaa                                                                                                            >  2:2300914/1‑140 (MQ=255)

                          aaaGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCaaa                                                                                                            <  2:828080/139‑1 (MQ=255)

                            aGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATg                                                                                                          >  2:2081641/1‑140 (MQ=255)

                            aGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATg                                                                                                          >  1:934499/1‑140 (MQ=255)

                            aGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATg                                                                                                          >  1:964079/1‑140 (MQ=255)

                            aGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATg                                                                                                          >  2:2017860/1‑140 (MQ=255)

                            aGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATg                                                                                                          >  1:728481/1‑140 (MQ=255)

                                  tataAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTgg                                                                                                    >  1:1571982/1‑140 (MQ=255)

                                    taAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGAt                                                                                                  <  2:2049430/140‑1 (MQ=255)

                                     aaaaGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATc                                                                                                 <  1:2004662/140‑1 (MQ=255)

                                        aGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCgt                                                                                              >  2:637308/1‑139 (MQ=255)

                                         gcgcGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGAt                                                                                             >  2:1708087/1‑140 (MQ=255)

                                           gcgGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCg                                                                                           >  2:2134149/1‑140 (MQ=255)

                                           gcgGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCg                                                                                           >  1:224345/1‑140 (MQ=255)

                                           gcgGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCg                                                                                           >  2:1441495/1‑140 (MQ=255)

                                           gcgGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCg                                                                                           >  1:1550929/1‑140 (MQ=255)

                                           gcgGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCg                                                                                           >  1:1421699/1‑140 (MQ=255)

                                            cgGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGa                                                                                          <  2:1440558/140‑1 (MQ=255)

                                             ggCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGaa                                                                                         >  2:1359935/1‑140 (MQ=255)

                                             ggCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGaa                                                                                         >  1:1668249/1‑140 (MQ=255)

                                                       tgTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACATGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACt                                                                               <  2:2117014/139‑1 (MQ=255)

                                                       cGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACt                                                                               >  1:637741/1‑140 (MQ=255)

                                                       cGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACt                                                                               <  2:2490917/140‑1 (MQ=255)

                                                         tAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTgg                                                                             >  2:2355574/1‑140 (MQ=255)

                                                         tAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTgg                                                                             <  2:763691/140‑1 (MQ=255)

                                                            aaCCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTc                                                                          >  2:2509987/1‑140 (MQ=255)

                                                            aaCCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTc                                                                          >  1:1091676/1‑140 (MQ=255)

                                                                 gTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGc                                                                     >  2:563392/1‑140 (MQ=255)

                                                                 gTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGc                                                                     >  1:1747333/1‑140 (MQ=255)

                                                                 gTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGc                                                                     <  1:2017860/140‑1 (MQ=255)

                                                                 gTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGc                                                                     >  2:1853329/1‑140 (MQ=255)

                                                                  tCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCg                                                                    >  1:60695/1‑140 (MQ=255)

                                                                      aTTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCg                                                                >  2:152490/1‑140 (MQ=255)

                                                                      aTTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCg                                                                >  2:1016781/1‑140 (MQ=255)

                                                                        tGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGaa                                                              <  1:2504336/140‑1 (MQ=255)

                                                                          aGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATc                                                            >  2:912704/1‑140 (MQ=255)

                                                                            cTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCgg                                                          >  2:1455004/1‑140 (MQ=255)

                                                                             tttCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGt                                                         <  1:2355574/140‑1 (MQ=255)

                                                                             tttCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGt                                                         <  2:2357813/140‑1 (MQ=255)

                                                                               tCCGGGGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCa                                                       >  2:951846/1‑140 (MQ=255)

                                                                               tCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGAGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCa                                                       >  2:2116819/1‑140 (MQ=255)

                                                                                ccGGGGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATACCCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCAt                                                      <  1:951846/140‑1 (MQ=255)

                                                                                ccGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCAt                                                      <  2:1550929/140‑1 (MQ=255)

                                                                                 cGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGGTAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATc                                                     >  1:1949820/1‑140 (MQ=255)

                                                                                 cGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATc                                                     <  2:1668249/140‑1 (MQ=255)

                                                                                      agagTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTga                                                >  2:1511313/1‑140 (MQ=255)

                                                                                          ttCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTgaagaa                                            <  2:2005945/140‑1 (MQ=255)

                                                                                               agggACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGgtgt                                       <  2:686197/139‑1 (MQ=255)

                                                                                                  gACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGa                                    <  1:1046685/140‑1 (MQ=255)

                                                                                                  gACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGa                                    >  1:1538039/1‑140 (MQ=255)

                                                                                                    cAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGc                                  <  2:1161240/140‑1 (MQ=255)

                                                                                                    cAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGc                                  >  1:874922/1‑140 (MQ=255)

                                                                                                    cAGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGc                                  >  2:443455/1‑140 (MQ=255)

                                                                                                     aGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCg                                 <  1:2081641/140‑1 (MQ=255)

                                                                                                     aGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCg                                 <  2:60695/140‑1 (MQ=255)

                                                                                                     aGGTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCg                                 <  1:1016781/140‑1 (MQ=255)

                                                                                                      ggTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGt                                <  1:1226077/140‑1 (MQ=255)

                                                                                                       gTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGa                                    <  1:2095931/135‑1 (MQ=255)

                                                                                                       gTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTg                               >  1:114325/1‑140 (MQ=255)

                                                                                                       gTTCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTg                               <  2:1091676/140‑1 (MQ=255)

                                                                                                         tCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCg                                 <  2:1803745/136‑1 (MQ=255)

                                                                                                         tCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCg                                 >  1:1803745/1‑136 (MQ=255)

                                                                                                         tCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                             >  1:1159055/1‑140 (MQ=255)

                                                                                                         tCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                             <  2:637741/140‑1 (MQ=255)

                                                                                                         tCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                             <  1:1359935/140‑1 (MQ=255)

                                                                                                         tCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                             <  1:1853329/140‑1 (MQ=255)

                                                                                                         tCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                             <  2:964079/140‑1 (MQ=255)

                                                                                                         tCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                             <  1:2134149/140‑1 (MQ=255)

                                                                                                         tCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                             <  1:2300914/140‑1 (MQ=255)

                                                                                                         tCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                             <  1:613099/140‑1 (MQ=255)

                                                                                                         tCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                             <  1:563392/140‑1 (MQ=255)

                                                                                                         tCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                             <  1:539928/140‑1 (MQ=255)

                                                                                                         tCCAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGGCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAGTCGGTCATCCGTGAAGAAGGTGTTGAGcatact                             <  1:1217621/140‑6 (MQ=255)

                                                                                                           cAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGt                                >  1:834503/1‑135 (MQ=255)

                                                                                                           cAGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGt                                <  2:834503/135‑1 (MQ=255)

                                                                                                            aGAAAACTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                             <  1:13801/137‑1 (MQ=255)

                                                                                                                 aCTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCt                     >  1:1296791/1‑140 (MQ=255)

                                                                                                                 aCTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCt                     >  1:310624/1‑140 (MQ=255)

                                                                                                                  cTCAACGTTATTAGATAGATAATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTg                    >  1:2393281/1‑140 (MQ=255)

                                                                                                                               gatagataATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACtgc       <  2:1421699/140‑1 (MQ=255)

                                                                                                                                   gataATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACtgcttgc   >  1:2004231/1‑140 (MQ=255)

                                                                                                                                    ataATGAATAACCCATGTCAGAACGTTTCTCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACtgcttgct  >  1:2228580/1‑140 (MQ=255)

                                                                                                                                    ataATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACtgcttgct  >  2:583062/1‑140 (MQ=255)

                                                                                                                                    ataATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACtgcttgct  >  1:2493677/1‑140 (MQ=255)

                                                                                                                                    ataATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACtgcttgct  >  1:817754/1‑140 (MQ=255)

                                                                                                                                    ataATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACtgcttgct  >  1:1048574/1‑140 (MQ=255)

                                                                                                                                    ataATGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACtgcttgct  >  2:270612/1‑140 (MQ=255)

AAAATTATCCAGAAGATGTTGTAAATCAAGCGCATATAAAAGCGCGGCAACTAAACGTAGAACCTGTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCT  >  NC_000913/122871‑123142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A