Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F48 I1 R1 75 141.5 4784044 99.1% 4740987 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 294,306 T→C N165S (AAT→AGT)  yagM ← CP4‑6 prophage; protein YagM

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913294,3060TC100.0% 615.1 / NA 153N165S (AAT→AGT) yagMCP4‑6 prophage; protein YagM
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (77/76);  total (77/76)

Only 100 of 156 total aligned reads displayed.

CCTGCCCGGCATCAAAGTAATAACCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAATTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATGGACTCATGATGTTCGTTTTCCAGATTAA  >  NC_000913/294169‑294442
                                                                                                                                         |                                                                                                                                        
ccTGCCCGGCATCAAAGTAATAACCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAActt                                                                                                                                        >  2:487455/1‑140 (MQ=255)
   gCCCGGCATCAAAGTAATAACCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGTCTTTTTCCATATCGTAACTTTcc                                                                                                                                     >  2:1454116/1‑140 (MQ=255)
    cccGGCATCAAAGTAATAACCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTccc                                                                                                                                    <  1:1893081/140‑1 (MQ=255)
    cccGGCATCAAAGTAATAACCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTccc                                                                                                                                    <  1:1139354/140‑1 (MQ=255)
    cccGGCATCAAAGTAATAACCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTccc                                                                                                                                    <  1:1444381/140‑1 (MQ=255)
        gCATCAAAGTAATAACCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAg                                                                                                                                <  2:646976/140‑1 (MQ=255)
        gCATCAAAGTAATAACCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAg                                                                                                                                <  1:1500447/140‑1 (MQ=255)
         cATCAAAGTAATAACCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGc                                                                                                                               <  1:1857314/140‑1 (MQ=255)
               aGTAATAACCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGAt                                                                                                                         <  2:1155686/140‑1 (MQ=255)
               aGTAATAACCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGAt                                                                                                                         <  2:758341/140‑1 (MQ=255)
               aGTAATAACCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGAt                                                                                                                         <  1:308058/140‑1 (MQ=255)
                 taataaCCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAg                                                                                                                       <  2:1071937/140‑1 (MQ=255)
                 taataaCCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAg                                                                                                                       <  1:1539138/140‑1 (MQ=255)
                     aaCCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCtt                                                                                                                   <  2:2015224/140‑1 (MQ=255)
                     aaCCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCtt                                                                                                                   <  1:545560/140‑1 (MQ=255)
                      aCCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCttt                                                                                                                  >  2:1663819/1‑140 (MQ=255)
                       cccTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTc                                                                                                                 <  2:1891820/140‑1 (MQ=255)
                       accTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTc                                                                                                                 <  2:1404632/139‑1 (MQ=255)
                       accTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTc                                                                                                                 <  2:868204/139‑1 (MQ=255)
                         cTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCAc                                                                                                               >  1:1356441/1‑140 (MQ=255)
                           cAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGt                                                                                                             >  1:1368508/1‑140 (MQ=255)
                           cAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGt                                                                                                             >  1:1972594/1‑140 (MQ=255)
                              aGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGtata                                                                                                          <  2:1436529/140‑1 (MQ=255)
                                  tgttCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATaa                                                                                                         >  1:164592/1‑137 (MQ=255)
                                  tgttCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATaa                                                                                                         <  2:164592/137‑1 (MQ=255)
                                   gttCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGt                                                                                                     >  1:1932189/1‑140 (MQ=255)
                                   gttCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGt                                                                                                     >  2:812442/1‑140 (MQ=255)
                                    ttCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGtt                                                                                                    >  1:380809/1‑140 (MQ=255)
                                    ttCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGtt                                                                                                    >  2:1770832/1‑140 (MQ=255)
                                    ttCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGtt                                                                                                    >  2:1790771/1‑140 (MQ=255)
                                        aTGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGtttttt                                                                                                >  1:1246152/1‑140 (MQ=255)
                                              aagaataaTGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCtt                                                                                          >  1:1879499/1‑140 (MQ=255)
                                              aagaataaTGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATAGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCtt                                                                                          >  2:2135874/1‑140 (MQ=255)
                                               agaataaTGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCttt                                                                                         >  2:495107/1‑140 (MQ=255)
                                                gaataaTGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTc                                                                                        <  2:2138466/140‑1 (MQ=255)
                                                   taatGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTcccc                                                                                     <  2:1151414/140‑1 (MQ=255)
                                                   taatGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTcccc                                                                                     <  1:1502772/140‑1 (MQ=255)
                                                     atGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCAt                                                                                   <  1:1060933/140‑1 (MQ=255)
                                                     atGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCAt                                                                                   >  2:207899/1‑140 (MQ=255)
                                                      tGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAACGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATg                                                                                  <  1:2178534/140‑1 (MQ=255)
                                                        tttGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGaa                                                                                <  2:1427263/140‑1 (MQ=255)
                                                        tttGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGaa                                                                                <  1:762563/140‑1 (MQ=255)
                                                          tGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAAtt                                                                              >  2:1372519/1‑140 (MQ=255)
                                                          tGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAAtt                                                                              <  2:123664/140‑1 (MQ=255)
                                                          tGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAAtt                                                                              >  1:2380193/1‑140 (MQ=255)
                                                          tGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAAtt                                                                              <  1:1636376/140‑1 (MQ=255)
                                                          tGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGCTTTTTCATCTTTCCCCATGAAtt                                                                              >  1:2178282/1‑140 (MQ=255)
                                                           gAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATtc                                                                             >  1:386529/1‑140 (MQ=255)
                                                           gAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATtc                                                                             >  1:245829/1‑140 (MQ=255)
                                                           gAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATtc                                                                             >  2:382179/1‑140 (MQ=255)
                                                           gAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATtc                                                                             >  2:580945/1‑140 (MQ=255)
                                                                tCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTcatcat                                                                        >  2:1256235/1‑140 (MQ=255)
                                                                     agaCACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCg                                                                   <  2:380809/140‑1 (MQ=255)
                                                                     agaCACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCg                                                                   >  2:1321523/1‑140 (MQ=255)
                                                                      gaCACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGt                                                                  <  2:1356441/140‑1 (MQ=255)
                                                                      gaCACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGt                                                                  >  1:687873/1‑140 (MQ=255)
                                                                      aacacTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGt                                                                  <  2:1814995/139‑1 (MQ=255)
                                                                       acacTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGtt                                                                 <  2:249114/140‑1 (MQ=255)
                                                                       acacTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGtt                                                                 <  2:1507727/140‑1 (MQ=255)
                                                                         acTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCa                                                               >  2:184738/1‑140 (MQ=255)
                                                                           tttGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGt                                                             >  2:1405315/1‑140 (MQ=255)
                                                                           tttGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGt                                                             >  2:939134/1‑140 (MQ=255)
                                                                           tttGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGt                                                             >  2:1902282/1‑140 (MQ=255)
                                                                           tttGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGt                                                             >  1:87307/1‑140 (MQ=255)
                                                                              gATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGa                                                          <  2:208407/140‑1 (MQ=255)
                                                                                tGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGaaa                                                        <  1:495107/140‑1 (MQ=255)
                                                                                     tACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAAt                                                   >  2:729781/1‑140 (MQ=255)
                                                                                     tACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAAt                                                   >  2:2347498/1‑140 (MQ=255)
                                                                                     tACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAAt                                                   >  2:1533112/1‑140 (MQ=255)
                                                                                     tACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAAt                                                   >  2:148626/1‑140 (MQ=255)
                                                                                     tACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAAt                                                   >  2:826208/1‑140 (MQ=255)
                                                                                       cATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCt                                                 >  1:1094231/1‑140 (MQ=255)
                                                                                          cAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCa                                              <  1:580945/140‑1 (MQ=255)
                                                                                             aaTGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATg                                           <  1:729781/140‑1 (MQ=255)
                                                                                              aTGTCTTTGATTGTAGATGTCAATGGCTTTTTCCATATTGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGATTATTCATCTTTCCCCAGGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATgg                                          <  2:1204082/140‑1 (MQ=255)
                                                                                                 tCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGa                                       >  1:1734182/1‑140 (MQ=255)
                                                                                                 tCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGa                                       >  1:2285913/1‑140 (MQ=255)
                                                                                                  cTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGAt                                      <  1:1256235/140‑1 (MQ=255)
                                                                                                       aTTGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTa                                 <  1:1403897/140‑1 (MQ=255)
                                                                                                        ttGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTaa                                <  1:1172490/140‑1 (MQ=255)
                                                                                                        ttGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTaa                                <  2:171167/140‑1 (MQ=255)
                                                                                                        ttGTAAATGTAAATGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTaa                                <  2:687873/140‑1 (MQ=255)
                                                                                                          gtaaatgtaaatGGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATg                              <  2:245829/140‑1 (MQ=255)
                                                                                                           taaatgtaaatgGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATgg                             >  1:228972/1‑140 (MQ=255)
                                                                                                           taaatgtaaatgGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATgg                             >  2:2332511/1‑140 (MQ=255)
                                                                                                           taaatgtaaatgGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATgg                             >  2:1727235/1‑140 (MQ=255)
                                                                                                           taaatgtaaatgGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATgg                             >  2:436351/1‑140 (MQ=255)
                                                                                                             aatgtaaatgGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAAt                               <  2:863432/136‑1 (MQ=255)
                                                                                                             aatgtaaatgGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAAt                               >  1:863432/1‑136 (MQ=255)
                                                                                                               tgtaaatgGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATGGACTc                         <  2:1368508/140‑1 (MQ=255)
                                                                                                                gtaaatgGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATGGACTCa                        <  2:1094231/140‑1 (MQ=255)
                                                                                                                 taaatgGCTTTTTCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATGGACTCat                       >  2:1010379/1‑140 (MQ=255)
                                                                                                                           tttCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATGGACTCATGATGTTCGtt             >  1:2053953/1‑140 (MQ=255)
                                                                                                                           tttCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATGGACTCATGATGTTCGtt             >  2:331939/1‑140 (MQ=255)
                                                                                                                           tttCCATATCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATGGACTCATGATGTTCGtt             >  2:1485756/1‑140 (MQ=255)
                                                                                                                                atatCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATGGACTCATGATGTTCGTTTTCCa        <  2:1792256/140‑1 (MQ=255)
                                                                                                                                 tatCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATGGACTCATGATGTTCg               <  1:1098892/132‑1 (MQ=255)
                                                                                                                                 tatCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATGGACTCATGATGTTCGTTTTCCAg       >  1:1858798/1‑140 (MQ=255)
                                                                                                                                  atCGTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATGGACTCATGATGTTCGTTTTCCAGa      <  2:386529/140‑1 (MQ=255)
                                                                                                                                     gTAACTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATGGACTCATGATGTTCGTTTTCCAGATTa   <  1:1049946/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
CCTGCCCGGCATCAAAGTAATAACCCTCAAAGGTTGTTCTATGAATAAGAATAATGTTTGAATATCCTGAGACACTTTGATGCTTTACATCAAAATGTCTTTGATTGTAAATGTAAATGGCTTTTTCCATATCGTAATTTTCCCTTAGCGAGGATAGCCTTTCACGTATAACTGTTTTTTCATCTTTCCCCATGAATTCATCATTAGCGTTCAGTTGAAAGTAATCTGCAATGGGGATTTTTAATGGACTCATGATGTTCGTTTTCCAGATTAA  >  NC_000913/294169‑294442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A