Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F48 I1 R1	75	141.5	4784044	99.1%	4740987	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	335,858	G→T	A193A (GCG→GCT)	yahD →	ankyrin repeat‑containing protein YahD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	335,858	0	G	T	100.0%	600.1 / NA	166	A193A (GCG→GCT)	yahD	ankyrin repeat‑containing protein YahD
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (83/83); total (83/83)

Only 100 of 168 total aligned reads displayed.

TGCTTAATGATGGTGGTATTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCGCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCGGGGGCAAGGACAGGTTGAACAGGTCTTTG  >  NC_000913/335722‑335994

tgCTTAATGATGGTGGTATTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAg                                                                                                                                       >  2:1811632/1‑140 (MQ=255)

tgCTTAATGATGGTGGTATTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAg                                                                                                                                       <  2:87710/140‑1 (MQ=255)

           ggtggtATTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGc                                                                                                                            <  1:736134/140‑1 (MQ=255)

            gtggtATTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGcc                                                                                                                           >  2:693331/1‑140 (MQ=255)

            gtggtATTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGcc                                                                                                                           >  2:291360/1‑140 (MQ=255)

             tggtATTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAGCGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGAGTGCTCAGTTACTGATTGCCg                                                                                                                          <  1:542854/140‑1 (MQ=255)

               gtATTAAACAGCAGGCGATTGTGCTGTTATTGCTGGAAGACGGTGCCAGCCCGCATGCGACCGAGAGATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGTAGAGATTGCTCAGTTACTGATTGCCGCa                                                                                                                        >  2:2249549/1‑140 (MQ=255)

               gtATTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCa                                                                                                                        >  1:585403/1‑140 (MQ=255)

               gtATTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCa                                                                                                                        <  1:1830614/140‑1 (MQ=255)

               gtATTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCa                                                                                                                        >  2:90963/1‑140 (MQ=255)

               gtATTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCa                                                                                                                        <  1:1259282/140‑1 (MQ=255)

               gtATTAAACAGCAAGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCAGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCa                                                                                                                        >  2:222717/1‑140 (MQ=255)

                tATTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAg                                                                                                                       <  1:2346360/140‑1 (MQ=255)

                 aTTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAgg                                                                                                                      >  1:1838480/1‑140 (MQ=255)

                  ttAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGt                                                                                                                     >  2:1953048/1‑140 (MQ=255)

                  ttAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGt                                                                                                                     >  1:1775689/1‑140 (MQ=255)

                  ttAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGt                                                                                                                     >  2:1883428/1‑140 (MQ=255)

                     aaCAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCa                                                                                                                  <  1:574175/140‑1 (MQ=255)

                     aaCAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCa                                                                                                                  <  1:1149067/140‑1 (MQ=255)

                     aaCAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCa                                                                                                                  >  1:2141549/1‑140 (MQ=255)

                         gcagGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCAACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATaaa                                                                                                              >  2:2375118/1‑140 (MQ=255)

                          cagGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAAc                                                                                                             >  2:1206802/1‑140 (MQ=255)

                          cagGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAAc                                                                                                             >  2:1914842/1‑140 (MQ=255)

                          cagGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAAc                                                                                                             >  2:462392/1‑140 (MQ=255)

                          cagGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAAc                                                                                                             >  1:1474010/1‑140 (MQ=255)

                            ggCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCg                                                                                                           >  1:992590/1‑140 (MQ=255)

                             gCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCgg                                                                                                          <  1:2055789/140‑1 (MQ=255)

                             gCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCgg                                                                                                          <  1:1045794/140‑1 (MQ=255)

                               gATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGa                                                                                                        >  1:1590417/1‑140 (MQ=255)

                                  tgtgCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGc                                                                                                     <  2:1590417/140‑1 (MQ=255)

                                  tgtgCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGc                                                                                                     <  1:986422/140‑1 (MQ=255)

                                  tgtgCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGc                                                                                                     <  1:976032/140‑1 (MQ=255)

                                  tgtgCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGc                                                                                                     <  1:878732/140‑1 (MQ=255)

                                  tgtgCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGc                                                                                                     <  1:1719183/140‑1 (MQ=255)

                                  tgtgCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGc                                                                                                     <  1:495377/140‑1 (MQ=255)

                                    tgCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCtt                                                                                                   >  2:1273664/1‑140 (MQ=255)

                                    tgCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCtt                                                                                                   >  2:947342/1‑140 (MQ=255)

                                     gCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTg                                                                                                  <  1:744261/140‑1 (MQ=255)

                                       aGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCt                                                                                                <  2:1838480/140‑1 (MQ=255)

                                         ttATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTAt                                                                                              <  2:626823/140‑1 (MQ=255)

                                         ttATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTAt                                                                                              >  2:2360028/1‑140 (MQ=255)

                                           aTTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCa                                                                                            >  2:128402/1‑140 (MQ=255)

                                            ttGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCaa                                                                                           <  1:90963/140‑1 (MQ=255)

                                            ttGCTGGAACACGGTGCCAGCCCGCATCTGACAGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCaa                                                                                           <  2:2177201/140‑1 (MQ=255)

                                              gCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAaca                                                                                         <  2:1176252/140‑1 (MQ=255)

                                               cTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAacac                                                                                        <  1:1009183/140‑1 (MQ=255)

                                                 ggAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAacacac                                                                                      <  1:1883428/140‑1 (MQ=255)

                                                  gAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACAcc                                                                                     >  2:2379519/1‑140 (MQ=255)

                                                   aaCACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCa                                                                                    >  2:1229721/1‑140 (MQ=255)

                                                   aaCACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCa                                                                                    >  2:45354/1‑140 (MQ=255)

                                                       cGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGaaa                                                                                <  2:1638666/140‑1 (MQ=255)

                                                       cGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGaaa                                                                                <  1:1273664/140‑1 (MQ=255)

                                                       cGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGaaa                                                                                >  1:437698/1‑140 (MQ=255)

                                                       aggTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGaaa                                                                                <  2:704853/139‑1 (MQ=255)

                                                        ggTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAg                                                                               >  1:1507326/1‑140 (MQ=255)

                                                        ggTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAg                                                                               >  2:2039358/1‑140 (MQ=255)

                                                         gTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGa                                                                              <  1:1914842/140‑1 (MQ=255)

                                                         gTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGa                                                                              >  2:1642365/1‑140 (MQ=255)

                                                         gTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGa                                                                              <  1:291360/140‑1 (MQ=255)

                                                           gCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACg                                                                            <  1:1193121/140‑1 (MQ=255)

                                                           gCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACg                                                                            <  1:1642365/140‑1 (MQ=255)

                                                           gCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACg                                                                            <  1:1953048/140‑1 (MQ=255)

                                                           gCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACg                                                                            <  1:693331/140‑1 (MQ=255)

                                                            ccAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGTGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACgg                                                                           >  2:1495967/1‑140 (MQ=255)

                                                             cAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGgt                                                                          >  1:2199234/1‑140 (MQ=255)

                                                                   gCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGgtgtgtgt                                                                    >  2:1039326/1‑140 (MQ=255)

                                                                    cATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGa                                                                              >  1:1572554/1‑129 (MQ=255)

                                                                    cATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGtgtgtgtg                                                                   >  2:1688885/1‑140 (MQ=255)

                                                                    cATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGtgtgtgtg                                                                   >  1:1155146/1‑140 (MQ=255)

                                                                    cATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGAGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGtgtgtgtg                                                                   >  1:1354798/1‑140 (MQ=255)

                                                                               tAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACtg                                                        <  1:2039358/140‑1 (MQ=255)

                                                                               tAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACtg                                                        >  2:1429466/1‑140 (MQ=255)

                                                                               tAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACtg                                                        <  1:623601/140‑1 (MQ=255)

                                                                               tAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACtg                                                        >  1:1942465/1‑140 (MQ=255)

                                                                                   tatGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACtgcgga                                                    >  1:755063/1‑140 (MQ=255)

                                                                                        cAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACtgcggatgcgg                                               >  2:147609/1‑140 (MQ=255)

                                                                                        cAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACtgcggatgcgg                                               >  1:2332900/1‑140 (MQ=255)

                                                                                           aaCGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGAtt                                            >  1:964470/1‑140 (MQ=255)

                                                                                              gCCACTGGAACTGGCGCGGGAATGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTc                                         <  1:2001562/140‑1 (MQ=255)

                                                                                                      aaCTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAg                                 <  1:1719599/140‑1 (MQ=255)

                                                                                                        cTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCg                               >  1:1018062/1‑140 (MQ=255)

                                                                                                        cTGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGAATTTTCTGGCGCAGCg                               <  1:2364334/140‑1 (MQ=255)

                                                                                                        atGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCg                               <  2:211468/139‑1 (MQ=255)

                                                                                                        atGGCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCg                               <  2:755063/139‑1 (MQ=255)

                                                                                                          ggCGCGGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTAGCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCggg                             >  2:1946825/1‑140 (MQ=255)

                                                                                                            cgcgGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCggggg                           <  2:1738135/140‑1 (MQ=255)

                                                                                                            cgcgGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCggggg                           <  2:1567994/140‑1 (MQ=255)

                                                                                                             gcgGGAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCGGGGGc                          <  2:2141549/140‑1 (MQ=255)

                                                                                                               gggAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCGGGGGCaa                        >  2:1777054/1‑140 (MQ=255)

                                                                                                                ggAACGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCGGGGGCAAg                       >  1:521007/1‑140 (MQ=255)

                                                                                                                  aaCGGGGCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCGGGGGCAAGGa                     <  2:1358941/140‑1 (MQ=255)

                                                                                                                      gggCTTTGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGGTTTTCTGGCGCAGCGGGGGCAAGGACAgg                 <  1:1426868/140‑1 (MQ=255)

                                                                                                                            tGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCGGGGGCAAGGACAGGTTGAAc           <  1:263433/140‑1 (MQ=255)

                                                                                                                            tGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCGGGGGCAAGGACAGGTTGAAc           <  1:2144431/140‑1 (MQ=255)

                                                                                                                            tGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCGGGGGCAAGGACAGGTTGAAc           <  1:2083217/140‑1 (MQ=255)

                                                                                                                            tGAAGAGATTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCGGGGGCAAGGACAGGTTGAAc           >  2:1461340/1‑140 (MQ=255)

                                                                                                                                gagaTTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCGGGGGCAAGGACAGGTTGAACAGGt       <  1:659200/140‑1 (MQ=255)

                                                                                                                                   aTTGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCGGGGGCAAGGACAGGTTGAACAGGTCtt    >  2:919378/1‑140 (MQ=255)

                                                                                                                                    ttGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCGGGGGCAAGGACAGGTTGAACAGATCttt   >  2:1473988/1‑140 (MQ=255)

                                                                                                                                     tGCTCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCGGGGGCAAGGACAGGTTGAACAGGTCTTTg  >  2:1775288/1‑140 (MQ=255)

TGCTTAATGATGGTGGTATTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCGCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATGCGGATTTTCTGGCGCAGCGGGGGCAAGGACAGGTTGAACAGGTCTTTG  >  NC_000913/335722‑335994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A