Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F48 I1 R1	75	141.5	4784044	99.1%	4740987	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	398,030	C→A	R53R (CGC→CGA)	yaiW →	surface‑exposed outer membrane lipoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	398,030	0	C	A	100.0%	499.2 / NA	139	R53R (CGC→CGA)	yaiW	surface‑exposed outer membrane lipoprotein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (82/57); total (82/57)

Only 100 of 143 total aligned reads displayed.

TCGCTGTCATTGTTGGCGGTTCTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGCGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTATCAGGCAGATCCGGCCGTTCCGGGCTTA  >  NC_000913/397896‑398165

tCGCTGTCATTGTTGGCGGTTCTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGc                                                                                                                                    <  1:736242/140‑1 (MQ=255)

tCGCTGTCATTGTTGGCGGTTCTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCAGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGc                                                                                                                                    <  1:1907058/140‑1 (MQ=255)

 cGCTGTCATTGTTGGCGGTTCTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGcc                                                                                                                                   <  1:1103235/140‑1 (MQ=255)

  gCTGTCATTGTTGGCGGTTCTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCt                                                                                                                                  >  1:1375830/1‑140 (MQ=255)

   cTGTCATTGTTGGCGGTTCTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGGCCGAGATGCCTg                                                                                                                                 <  2:2173975/140‑1 (MQ=255)

   cTGTCATTGTTGGCGGTTCTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTg                                                                                                                                 >  1:463134/1‑140 (MQ=255)

   cTGTCATTGTTGGCGGTTCTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTg                                                                                                                                 >  1:1719022/1‑140 (MQ=255)

     gTCATTGTTGGCGGTTCTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTggg                                                                                                                               <  2:1939189/140‑1 (MQ=255)

     gTCATTGTTGGCGGTTCTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTggg                                                                                                                               <  1:1457308/140‑1 (MQ=255)

       cATTGTTGGCGGTTCTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCg                                                                                                                             <  1:2332490/140‑1 (MQ=255)

                tggTTCTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGAtctc                                                                                                                    >  2:1521858/2‑140 (MQ=255)

                cGGTTCTTGTTTTTGCGGGGTGTAGTTGTCAGGCCCCGCAAACGTTGAAAAAGGGCGGAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAAATGCCTGCGAGCGTGAAAAACCGAGAAGCCTTGGCGAAAGAtatt                                                                                                                    >  2:1814037/1‑137 (MQ=255)

                  gTTCTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGc                                                                                                                  >  2:2336625/1‑140 (MQ=255)

                     cTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGccac                                                                                                               <  1:1231541/140‑1 (MQ=255)

                     cTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGccac                                                                                                               <  2:1073474/140‑1 (MQ=255)

                      tGGTTTTTGCGGGGTGGAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGccacc                                                                                                              >  2:1570116/1‑140 (MQ=255)

                      tGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGccacc                                                                                                              <  2:1211859/140‑1 (MQ=255)

                              gCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGa                                                                                                      <  1:1266823/140‑1 (MQ=255)

                              gCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGa                                                                                                      <  1:857466/140‑1 (MQ=255)

                                  ggTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGATGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGt                                                                                                  >  1:521800/1‑140 (MQ=255)

                                  ggTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGt                                                                                                  >  1:1335731/1‑140 (MQ=255)

                                    tgtAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGATGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCa                                                                                                <  2:521800/140‑1 (MQ=255)

                                        gtagtCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAgggg                                                                                            <  2:1719022/140‑1 (MQ=255)

                                            tCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTgg                                                                                        >  1:1975690/1‑140 (MQ=255)

                                            tCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTgg                                                                                        <  1:2048636/140‑1 (MQ=255)

                                            tCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTgg                                                                                        >  2:1416150/1‑140 (MQ=255)

                                              aGGCTCTGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCa                                                                                      >  1:694660/1‑140 (MQ=255)

                                              aGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCa                                                                                      >  1:1016410/1‑140 (MQ=255)

                                              aGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCa                                                                                      >  1:1791851/1‑140 (MQ=255)

                                              aGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCa                                                                                      >  1:1325181/1‑140 (MQ=255)

                                              aGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCa                                                                                      >  1:2117914/1‑140 (MQ=255)

                                              aGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCa                                                                                      >  1:2206203/1‑140 (MQ=255)

                                              aGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCa                                                                                      >  2:2135616/1‑140 (MQ=255)

                                              aGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCa                                                                                      >  2:636549/1‑140 (MQ=255)

                                                gCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCAcc                                                                                    >  1:1462519/1‑140 (MQ=255)

                                                gCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCAcc                                                                                    >  2:1491908/1‑140 (MQ=255)

                                                gCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCAcc                                                                                    >  1:1906218/1‑140 (MQ=255)

                                                gCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCCGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCAcc                                                                                    >  2:1289844/1‑140 (MQ=255)

                                                 cTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCg                                                                                   <  1:641770/140‑1 (MQ=255)

                                                   ccGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGAc                                                                                 >  2:692328/1‑140 (MQ=255)

                                                   ccGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGAc                                                                                 >  2:2070673/1‑140 (MQ=255)

                                                   ccGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGAc                                                                                 >  1:1997104/1‑140 (MQ=255)

                                                     gCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGc                                                                               >  1:618423/1‑140 (MQ=255)

                                                          cGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCCCGCCACCACCTTTGAAAGTCAGGGGCTGGCATCGACGCTGGaa                                                                          <  2:1885387/140‑1 (MQ=255)

                                                              gAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACg                                                                      >  2:2387919/1‑140 (MQ=255)

                                                              gAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACg                                                                      >  1:1981791/1‑140 (MQ=255)

                                                                    gggCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCTTGAAAGACCAAGATGCCTGGGCAAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCt                                                                <  2:2206203/140‑1 (MQ=255)

                                                                    gggCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGTAAACGTCTGCt                                                                <  1:1416150/140‑1 (MQ=255)

                                                                    gggCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCt                                                                >  1:1971694/1‑140 (MQ=255)

                                                                    gggCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCt                                                                <  2:370182/140‑1 (MQ=255)

                                                                    gggCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCt                                                                >  1:2233083/1‑140 (MQ=255)

                                                                    gggCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCt                                                                <  2:1891215/140‑1 (MQ=255)

                                                                     ggCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTc                                                               <  1:841277/140‑1 (MQ=255)

                                                                     ggCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTc                                                               <  1:2070673/140‑1 (MQ=255)

                                                                     ggCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTc                                                               <  2:1119619/140‑1 (MQ=255)

                                                                     ggCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCCGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTc                                                               <  1:1289844/140‑1 (MQ=255)

                                                                      gCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCg                                                              >  2:331702/1‑140 (MQ=255)

                                                                         aaaaaGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCTTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTg                                                           <  2:1913796/140‑1 (MQ=255)

                                                                         aaaaaGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTg                                                           <  1:1227496/140‑1 (MQ=255)

                                                                             aGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTgg                                                       <  2:1601719/140‑1 (MQ=255)

                                                                               cGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCg                                                     <  2:194309/140‑1 (MQ=255)

                                                                                gATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCgg                                                    <  2:1462519/140‑1 (MQ=255)

                                                                                gATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCgg                                                    <  1:331702/140‑1 (MQ=255)

                                                                                        tAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCgcag                                            >  1:1348781/1‑140 (MQ=255)

                                                                                        tAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCgcag                                            <  1:1409871/140‑1 (MQ=255)

                                                                                        tAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCgcag                                            <  1:80320/140‑1 (MQ=255)

                                                                                        tAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCgcag                                            <  2:65352/140‑1 (MQ=255)

                                                                                         agcgagcgTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCgcagc                                           >  2:725463/1‑140 (MQ=255)

                                                                                         agcgagcgTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCgcagc                                           >  2:1817971/1‑140 (MQ=255)

                                                                                           cgagcgTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGcagcag                                         <  2:2353487/140‑1 (MQ=255)

                                                                                            gagcgTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAgg                                        >  2:665562/1‑140 (MQ=255)

                                                                                              gcgTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAg                                      >  1:823150/1‑140 (MQ=255)

                                                                                               cgtcgtGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGcagcagtggc                                     >  2:662813/1‑136 (MQ=255)

                                                                                               cgtcgtGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGcagcag                                         >  1:687651/1‑136 (MQ=255)

                                                                                               cgtcgtGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGcagcag                                         <  2:687651/136‑1 (MQ=255)

                                                                                               cgtcgtGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGt                                     >  2:479341/1‑140 (MQ=255)

                                                                                               cgtcgtGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGt                                     >  1:108031/1‑140 (MQ=255)

                                                                                               cgtcgtGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGt                                     >  2:611213/1‑140 (MQ=255)

                                                                                               cgtcgtGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGt                                     >  1:1302198/1‑140 (MQ=255)

                                                                                               cgtcgtGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGt                                     >  1:1527146/1‑140 (MQ=255)

                                                                                               cgtcgtGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGt                                     >  1:67247/1‑140 (MQ=255)

                                                                                                gtcgtGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAACACGAGTc                                    >  2:2001540/1‑140 (MQ=255)

                                                                                                 tcgtGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCa                                   >  2:769219/1‑140 (MQ=255)

                                                                                                  cgtGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCaa                                  >  2:2174388/1‑140 (MQ=255)

                                                                                                    tGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAAt                                >  2:2200512/1‑140 (MQ=255)

                                                                                                    tGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAAt                                >  2:90746/1‑140 (MQ=255)

                                                                                                      cGGCAGAAGATGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTa                              <  2:1975690/140‑1 (MQ=255)

                                                                                                           gaagaTGCCTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTATCAgg                         <  2:2233083/140‑1 (MQ=255)

                                                                                                                   cTGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTATCAGGCAGATCCg                 >  2:1179772/1‑140 (MQ=255)

                                                                                                                    tGCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTATCAGGCAGATCCgg                <  1:1814037/140‑1 (MQ=255)

                                                                                                                     gCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTATCAGGCAGATCCGGc               <  1:288324/140‑1 (MQ=255)

                                                                                                                     gCGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTATCAGGCAGATCCGGc               <  1:2312102/140‑1 (MQ=255)

                                                                                                                      cGAGCGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTATCAGGCAGATCCGGcc              >  1:1673196/1‑140 (MQ=255)

                                                                                                                          cGTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGGGTCAAATTATCAGGAAGATCCGGCCGttt          >  2:1381974/1‑139 (MQ=255)

                                                                                                                           gTGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTATCAGGCAGATCCGGCCGTTcc         >  1:688198/1‑140 (MQ=255)

                                                                                                                            tGAAAGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTATCAGGCAGATCCGGCCGTTCCg        >  1:2382919/1‑140 (MQ=255)

                                                                                                                              aaaGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTATCAGGCAGATCCGGCCGTTCCggg      >  1:189458/1‑140 (MQ=255)

                                                                                                                               aaGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTATCAGGCAGATCCGGCCGTTCCGGGc     <  1:782286/140‑1 (MQ=255)

                                                                                                                               aaGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTATCAGGCAGATCCGGCCGTTCCGGGc     <  2:1375830/140‑1 (MQ=255)

                                                                                                                               aaGACCGAGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTATCAGGCAGATCCGGCCGTTCCGGGc     <  2:893964/140‑1 (MQ=255)

TCGCTGTCATTGTTGGCGGTTCTGGTTTTAGCGGGGTGTAGTAGTCAGGCTCCGCAACCGTTGAAAAAGGGCGAAAAAGCGATAGATGTAGCGAGCGTCGTGCGGCAGAAGATGCCTGCGAGCGTGAAAGACCGCGATGCCTGGGCGAAAGATCTCGCCACCACCTTTGAAAGTCAGGGGCTGGCACCGACGCTGGAAAACGTCTGCTCGGTGCTGGCGGTGGCGCAGCAGGAGTCAAATTATCAGGCAGATCCGGCCGTTCCGGGCTTA  >  NC_000913/397896‑398165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A