Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F48 I1 R1	75	141.5	4784044	99.1%	4740987	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	587,517	G→A	A155A (GCC→GCT)	ybcH ←	DUF4434 domain‑containing protein YbcH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	587,517	0	G	A	100.0%	297.2 / NA	84	A155A (GCC→GCT)	ybcH	DUF4434 domain‑containing protein YbcH
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (42/42); total (42/42)

ACGTGTTCCAGCAGTTGGCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGGGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGATTAAGATAGCTT  >  NC_000913/587383‑587649

aCGTGTTCCAGCAGTTGGCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGagcggc                                                                                                                                 <  1:350278/140‑1 (MQ=255)

     ttCCAGCAGTTGGCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGc                                                                                                                            <  2:1395015/140‑1 (MQ=255)

     ttCCAGCAGTTGGCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGc                                                                                                                            >  2:1781023/1‑140 (MQ=255)

     ttCCAGCAGTTGGCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGc                                                                                                                            >  2:377201/1‑140 (MQ=255)

     ttCCAGCAGTTGGCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGc                                                                                                                            >  1:8813/1‑140 (MQ=255)

     ttCCAGCAGTTGGCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGc                                                                                                                            >  2:1740903/1‑140 (MQ=255)

     ttCCAGCAGTTGGCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGc                                                                                                                            >  2:506130/1‑140 (MQ=255)

     ttCCAGCAGTTGGCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGc                                                                                                                            >  2:826966/1‑140 (MQ=255)

          gcagTTGGCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTgcgc                                                                                                                       <  1:417484/140‑1 (MQ=255)

              ttGGCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGt                                                                                                                   >  1:362808/1‑140 (MQ=255)

                ggCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGc                                                                                                                            >  2:1528409/1‑129 (MQ=255)

                ggCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGc                                                                                                                            <  1:1528409/129‑1 (MQ=255)

                ggCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTc                                                                                                                 >  2:814372/1‑140 (MQ=255)

                ggCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTc                                                                                                                 >  1:2098819/1‑140 (MQ=255)

                ggCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTc                                                                                                                 >  1:396035/1‑140 (MQ=255)

                  cGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAg                                                                                                               >  1:1047458/1‑140 (MQ=255)

                   gATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAgg                                                                                                              <  1:1220657/140‑1 (MQ=255)

                        ccATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGgtcgtc                                                                                                         <  1:999870/140‑1 (MQ=255)

                            cGGGCGACATGTTTCTGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAAtt                                                                                                     >  2:482783/1‑140 (MQ=255)

                                ggACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCcg                                                                                                 <  1:1540266/139‑1 (MQ=255)

                                cGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCcg                                                                                                 <  1:945201/140‑1 (MQ=255)

                                cGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCcg                                                                                                 <  1:1326206/140‑1 (MQ=255)

                                 gACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCcgc                                                                                                <  1:1781023/140‑1 (MQ=255)

                                 gACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCcgc                                                                                                <  2:1047458/140‑1 (MQ=255)

                                 gACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTGAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCcgc                                                                                                <  1:27872/140‑1 (MQ=255)

                                  aCATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCcgcg                                                                                               <  1:2084851/140‑1 (MQ=255)

                                   cATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCgcgc                                                                                              >  2:593479/1‑140 (MQ=255)

                                    aTGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTACGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCt                                                                                             <  1:1025488/140‑1 (MQ=255)

                                     tGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTg                                                                                            <  1:814372/140‑1 (MQ=255)

                                         tCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGt                                                                                        >  2:254467/1‑140 (MQ=255)

                                             gCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCa                                                                                    >  1:184372/1‑140 (MQ=255)

                                                    aaCTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATcc                                                                             <  2:238633/140‑1 (MQ=255)

                                                     actactGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCg                                                                            <  2:362808/140‑1 (MQ=255)

                                                          tGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGtt                                                                       <  1:1340953/140‑1 (MQ=255)

                                                              ataAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGc                                                                   >  2:1380/1‑140 (MQ=255)

                                                                    cGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAggcg                                                             <  1:630273/140‑1 (MQ=255)

                                                                      gTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAggcgcg                                                           >  1:472923/1‑140 (MQ=255)

                                                                      gTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAggcgcg                                                           >  1:414157/1‑140 (MQ=255)

                                                                      gTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAggcgcg                                                           >  2:26789/1‑140 (MQ=255)

                                                                      gTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGACGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAggcgcg                                                           >  2:704063/1‑140 (MQ=255)

                                                                       ttttGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAggcgcgg                                                          <  2:2285928/140‑1 (MQ=255)

                                                                       ttttGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAggcgcgg                                                          <  1:593479/140‑1 (MQ=255)

                                                                       ttttGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAggcgcgg                                                          >  2:2359314/1‑140 (MQ=255)

                                                                       ttttGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAggcgcgg                                                          <  2:278833/140‑1 (MQ=255)

                                                                         ttGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAggcgcggcg                                                        <  1:826966/140‑1 (MQ=255)

                                                                         ttGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAggcgcggcg                                                        <  1:943397/140‑1 (MQ=255)

                                                                         ttGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAggcgcggcg                                                        <  1:1381521/140‑1 (MQ=255)

                                                                            cTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTc                                                     <  2:184372/140‑1 (MQ=255)

                                                                             tGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTcc                                                    <  1:1927252/140‑1 (MQ=255)

                                                                                   aTCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATc                                              <  2:8813/140‑1 (MQ=255)

                                                                                     cGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTg                                            <  2:936965/140‑1 (MQ=255)

                                                                                     cGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTg                                            <  1:1395624/140‑1 (MQ=255)

                                                                                       cTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGc                                          <  1:370989/140‑1 (MQ=255)

                                                                                       cTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGc                                          <  1:410581/140‑1 (MQ=255)

                                                                                       cTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGc                                          <  1:1939973/140‑1 (MQ=255)

                                                                                           tCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGc                                      <  1:704063/140‑1 (MQ=255)

                                                                                               ccGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGc                                          >  1:1029636/1‑132 (MQ=255)

                                                                                               ccGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGga                                  >  1:1301516/1‑140 (MQ=255)

                                                                                               ccGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGga                                  >  2:568778/1‑140 (MQ=255)

                                                                                               ccGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGga                                  >  1:1669318/1‑140 (MQ=255)

                                                                                               ccGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTGCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGc                                          <  2:1029636/132‑1 (MQ=255)

                                                                                                     cgcgTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCgg                            <  2:1669318/140‑1 (MQ=255)

                                                                                                     agacaggttTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCgg                            <  1:1209115/134‑1 (MQ=255)

                                                                                                       cgTTGTTTAACCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGca                          <  1:26789/140‑1 (MQ=255)

                                                                                                               aaCCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCcagcag                  <  1:254467/140‑1 (MQ=255)

                                                                                                               aaCCATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCcagcag                  <  2:2098819/140‑1 (MQ=255)

                                                                                                                 ccATGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTCCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGc                >  2:184510/1‑140 (MQ=255)

                                                                                                                  aaTGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCg               <  2:414157/139‑1 (MQ=255)

                                                                                                                    tGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGAt             >  2:1200340/1‑140 (MQ=255)

                                                                                                                    tGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGAt             >  2:2215634/1‑140 (MQ=255)

                                                                                                                    tGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGAt             >  1:2100307/1‑140 (MQ=255)

                                                                                                                    tGTTAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCAATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGAt             >  1:1586613/1‑140 (MQ=255)

                                                                                                                      ttAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCTTAATCTGGCTTGCTGACGCTCTGCAGCCAGCAGGctgtct           >  2:1209115/1‑135 (MQ=255)

                                                                                                                      ttAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGATTa           >  2:657716/1‑140 (MQ=255)

                                                                                                                      ttAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGATTa           >  1:101166/1‑140 (MQ=255)

                                                                                                                      ttAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGATTa           >  1:895629/1‑140 (MQ=255)

                                                                                                                      ttAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGATTa           >  2:736725/1‑140 (MQ=255)

                                                                                                                      ttAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGATTa           >  1:83905/1‑140 (MQ=255)

                                                                                                                      ttAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGATTa           >  1:1402229/1‑140 (MQ=255)

                                                                                                                      ttAGCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGAACCAGCCATCCGGCGTTATGCCAGTCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGCTTa           >  2:864393/1‑140 (MQ=255)

                                                                                                                         gCAAAGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGATTAAGa        <  1:506130/140‑1 (MQ=255)

                                                                                                                           aaaGGCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGATTAAGATa      >  2:2195716/1‑140 (MQ=255)

                                                                                                                               gCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGATTAAGa        >  2:460739/1‑134 (MQ=255)

                                                                                                                               gCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGATTAAGa        <  1:460739/134‑1 (MQ=255)

                                                                                                                               gCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGATTAAGATAGCtt  >  2:814066/1‑140 (MQ=255)

                                                                                                                               gCTGACGAGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGATTAAGATAGCtt  >  2:1151552/1‑140 (MQ=255)

ACGTGTTCCAGCAGTTGGCGATAGCCATCGGGCGACATGTTTCCGGCGAAAAAACTACTGATATAAACCGGTTTTGCTGAAACATCGCTAATCAGCCGCTGCGCGTTGTTTAACCATGTTAGCAAAGGCTGACGGGCGGCTTCGCTGCGCCAGTTCAGGTCGTCAATTTCCGCGCTGATGTACCAGCCATCCGGCGTTATGCCAGGCGCGGCGCTCCATAATCTGGCTTGCTGGAGATCGGCAGCCAGCAGGCGATTAAGATAGCTT  >  NC_000913/587383‑587649

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A