Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F48 I1 R1 83 81.6 2760494 99.1% 2735649 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 591,492 C→A A563S (GCC→TCC)  nfrB ← bacteriophage N4 receptor, inner membrane subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913591,4920CA100.0% 227.9 / NA 66A563S (GCC→TCC) nfrBbacteriophage N4 receptor, inner membrane subunit
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (29/37);  total (29/37)

ACGTAACGCACTTTGCGTCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGCCGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGAACCGCCC  >  NC_000913/591356‑591625
                                                                                                                                        |                                                                                                                                     
aCGTAACGCACTTTGCGTCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACgg                                                                                                                                    >  2:14224/1‑140 (MQ=255)
   tAACGCACTTTGCGTCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCAt                                                                                                                                 >  2:1304836/1‑140 (MQ=255)
   tAACGCACTTTGCGTCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCAt                                                                                                                                 >  2:1040304/1‑140 (MQ=255)
     aCGCACTTTGCGTCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCAttt                                                                                                                               >  2:780874/1‑140 (MQ=255)
        cACTTTGCGTCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCgg                                                                                                                            >  2:616754/1‑140 (MQ=255)
          cTTTGCGTCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCa                                                                                                                          >  2:966745/1‑140 (MQ=255)
           tttGCGTCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCaa                                                                                                                         >  2:1189043/1‑140 (MQ=255)
           tttGCGTCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCaa                                                                                                                         >  2:229766/1‑140 (MQ=255)
            ttGCGTCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAAt                                                                                                                        <  2:905287/140‑1 (MQ=255)
            ttGCGTCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAAt                                                                                                                        <  2:72681/140‑1 (MQ=255)
            ttGCGTCAGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAAt                                                                                                                        <  1:217447/140‑1 (MQ=255)
             tGCGTCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATc                                                                                                                       <  2:838216/140‑1 (MQ=255)
              gCGTCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCa                                                                                                                      <  1:184880/140‑1 (MQ=255)
                 tCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCg                                                                                                                   <  1:56150/140‑1 (MQ=255)
                    gACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAgg                                                                                                                <  2:30872/140‑1 (MQ=255)
                            gcgTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATc                                                                                                        <  1:634584/140‑1 (MQ=255)
                             cgTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCt                                                                                                       >  2:561538/1‑140 (MQ=255)
                                cAGGGCCGCCAGCGAAACCGGGTCAATATCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGcc                                                                                                    >  1:90546/1‑140 (MQ=255)
                                cAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGcc                                                                                                    <  2:306132/140‑1 (MQ=255)
                                     ccgccAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCa                                                                                               <  1:1020612/140‑1 (MQ=255)
                                           gCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGGGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATg                                                                                         <  1:1329478/140‑1 (MQ=255)
                                           gCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATg                                                                                         <  1:1040304/140‑1 (MQ=255)
                                                 ccGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTcc                                                                                   <  2:1010326/140‑1 (MQ=255)
                                                            ccATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCacgccacgcc                                                                        <  1:1304836/140‑1 (MQ=255)
                                                             cATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCg                                                                       <  1:272991/140‑1 (MQ=255)
                                                               tCTTCACTGCCGACAATTAACTCGTCTTTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGACGtt                                                                     >  1:640341/1‑140 (MQ=255)
                                                               tCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGTCATCGATGGATTCCCACGCCACGCCGtt                                                                     >  2:1284500/1‑140 (MQ=255)
                                                               tCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGtt                                                                     >  2:312864/1‑140 (MQ=255)
                                                               tCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGtt                                                                     >  2:260146/1‑140 (MQ=255)
                                                                cTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGttt                                                                    <  1:759420/140‑1 (MQ=255)
                                                                    aCTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGct                                                                <  1:110728/140‑1 (MQ=255)
                                                                    aCTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGct                                                                >  2:1141383/1‑140 (MQ=255)
                                                                    aCTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGct                                                                >  2:1005600/1‑140 (MQ=255)
                                                                      tGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGctct                                                              >  2:423265/1‑140 (MQ=255)
                                                                       gCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGctctt                                                             >  2:454921/1‑139 (MQ=255)
                                                                        ccGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGc                                                            >  2:1155713/1‑140 (MQ=255)
                                                                         cGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGcc                                                           >  1:1145205/1‑140 (MQ=255)
                                                                          gACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTTCCACGCCACGCCGTTTTGCTCTGCCa                                                          <  1:857793/140‑1 (MQ=255)
                                                                           aCAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAg                                                         >  1:89830/1‑140 (MQ=255)
                                                                             aaTTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAgcg                                                       <  1:528833/140‑1 (MQ=255)
                                                                                       tCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAg                                             >  2:715601/1‑140 (MQ=255)
                                                                                         aTTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAgct                                           >  2:1052601/1‑140 (MQ=255)
                                                                                           tttCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAgctgc                                         >  2:530813/1‑140 (MQ=255)
                                                                                           tttCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAgctgc                                         >  2:995436/1‑140 (MQ=255)
                                                                                             tCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTc                                       >  2:343038/1‑140 (MQ=255)
                                                                                                 gACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGgcg                                   <  1:966745/140‑1 (MQ=255)
                                                                                                      aGCGGCAGTACCGCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAAt                              <  1:780874/140‑1 (MQ=255)
                                                                                                                  gCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCAt                  <  1:1189043/140‑1 (MQ=255)
                                                                                                                  gCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCAt                  <  1:608338/140‑1 (MQ=255)
                                                                                                                  gCATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCAt                  <  1:748670/140‑1 (MQ=255)
                                                                                                                   cATAATGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATc                 >  1:1036779/1‑140 (MQ=255)
                                                                                                                       aTGCAGCGCCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCa             <  1:561538/140‑1 (MQ=255)
                                                                                                                            gcgcCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGaa        <  1:618313/140‑1 (MQ=255)
                                                                                                                            gcgcCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGaa        <  1:343038/140‑1 (MQ=255)
                                                                                                                            gcgcCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGaa        <  1:121430/140‑1 (MQ=255)
                                                                                                                            gcgcCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGaa        <  1:1250808/140‑1 (MQ=255)
                                                                                                                            gcgcCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGaa        <  2:786322/140‑1 (MQ=255)
                                                                                                                             cgcCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGAAc       >  2:261841/1‑140 (MQ=255)
                                                                                                                             cgcCACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGAAc       >  1:801736/1‑140 (MQ=255)
                                                                                                                               ccACGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGAACCg     >  2:254798/1‑140 (MQ=255)
                                                                                                                                 aCGTAGGACGGCATTTCGGCAACCAGCGAGGAGGGGATATGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGAACCGcc   <  2:911203/140‑1 (MQ=255)
                                                                                                                                 aCGGAGGACGGCATTTCGGCAATTAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGAACCGcc   <  2:818531/140‑1 (MQ=255)
                                                                                                                                 aCGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGAACCGcc   <  1:170662/140‑1 (MQ=255)
                                                                                                                                 aCGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGAACCGcc   <  1:746790/140‑1 (MQ=255)
                                                                                                                                 aCGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGAACCGcc   <  1:243140/140‑1 (MQ=255)
                                                                                                                                 aCGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGAACCGcc   <  1:312864/140‑1 (MQ=255)
                                                                                                                                  cGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGAACCGccc  <  1:1334384/140‑1 (MQ=255)
                                                                                                                                  cGGAGGACGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGAACCGccc  <  2:680465/140‑1 (MQ=255)
                                                                                                                                  aggaggaCGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCATGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGAACCGccc  <  2:1153050/139‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                     
ACGTAACGCACTTTGCGTCCGACTTTACGCGTCAGGGCCGCCAGCGAAACCGGGTCAATACCATCTTCACTGCCGACAATTAACTCGTCATTTTCCAGACGCAGCGGCAGTACCGCATAATGCAGCGCCACGGAGGCCGGCATTTCGGCAATCAGCGAGGAAGGGATCTGCCAGGCATCGATGGATTCCCACGCCACGCCGTTTTGCTCTGCCAGCGCCTGTGCCAGCTGCTCGGCGCTAATCAGCCCCTGCATCAGCATTGAACCGCCC  >  NC_000913/591356‑591625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A