Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F48 I1 R1 75 141.5 4784044 99.1% 4740987 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 679,202 G→T L69I (CTT→ATT)  ybeT ← Sel1 repeat‑containing protein YbeT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913679,2020GT100.0% 592.0 / NA 162L69I (CTT→ATT) ybeTSel1 repeat‑containing protein YbeT
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (91/71);  total (91/71)

Only 100 of 162 total aligned reads displayed.

CCTTTGAGGTAGATCCACCCCAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAAGGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTT  >  NC_000913/679069‑679337
                                                                                                                                     |                                                                                                                                       
    tGAGGTAGATCCACCCCAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGc                                                                                                                               <  2:333940/140‑1 (MQ=255)
    tGAGGTAGATCCACCCCAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGc                                                                                                                               >  1:2297365/1‑140 (MQ=255)
    tGAGGTAGATCCACCCCAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGc                                                                                                                               <  1:1557464/140‑1 (MQ=255)
     gAGGTAGATCCACCCCAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCg                                                                                                                              <  2:619838/140‑1 (MQ=255)
      aGGTAGATCCACCCCAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGa                                                                                                                             <  2:63029/140‑1 (MQ=255)
      aGGTAGATCCACCCCAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGa                                                                                                                             <  2:1108659/140‑1 (MQ=255)
           gATCCACCCCAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTg                                                                                                                        >  1:2343055/1‑140 (MQ=255)
             tCCACCCCAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAg                                                                                                                      <  2:937028/140‑1 (MQ=255)
             tCCACCCCAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAg                                                                                                                      <  1:49293/140‑1 (MQ=255)
             tCCACCCCAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAg                                                                                                                      <  1:1868284/140‑1 (MQ=255)
              ccACCCCAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGt                                                                                                                     >  2:2196051/1‑140 (MQ=255)
                aCCCCAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGa                                                                                                                   >  1:872436/1‑140 (MQ=255)
                 ccccAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGAc                                                                                                                  >  1:1079429/1‑140 (MQ=255)
                 ccccAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGAc                                                                                                                  >  2:524234/1‑140 (MQ=255)
                 ccccAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGAc                                                                                                                  >  1:1938706/1‑140 (MQ=255)
                  cccAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGAcc                                                                                                                 >  1:67437/1‑140 (MQ=255)
                      gTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGa                                                                                                             >  2:1402283/1‑140 (MQ=255)
                       tttACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGTTATTGCGACGTTGAGTGACCATGaa                                                                                                            >  1:874687/1‑140 (MQ=255)
                       tttACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGaa                                                                                                            <  1:2206971/140‑1 (MQ=255)
                         tACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATc                                                                                                          <  1:1117438/140‑1 (MQ=255)
                          aCTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATcg                                                                                                         >  1:1208159/1‑140 (MQ=255)
                               gcgcgcGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTNNGACGTTGAGTGACCATGAATCGCGGaa                                                                                                    <  1:2350327/140‑1 (MQ=255)
                                cgcgcgTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGaaa                                                                                                   >  1:2329050/1‑140 (MQ=255)
                                cgcgcgTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGaaa                                                                                                   >  2:647430/1‑140 (MQ=255)
                                 gcgcgTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAg                                                                                                  >  1:1385767/1‑140 (MQ=255)
                                 gcgcgTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAg                                                                                                  >  1:570640/1‑140 (MQ=255)
                                    cgTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTc                                                                                               <  1:214247/140‑1 (MQ=255)
                                    cgTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTc                                                                                               <  1:1391903/140‑1 (MQ=255)
                                           tttCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCt                                                                                        <  2:2343055/140‑1 (MQ=255)
                                             tCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGc                                                                                      >  2:354724/1‑140 (MQ=255)
                                              ccTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGcc                                                                                     >  1:625301/1‑140 (MQ=255)
                                                 gTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCgtg                                                                                  <  1:461837/140‑1 (MQ=255)
                                                  ttCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGTGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCgtgg                                                                                 >  2:1461832/1‑140 (MQ=255)
                                                  ttCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCgtgg                                                                                 >  1:981793/1‑140 (MQ=255)
                                                  ttCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCgtgg                                                                                 >  1:1040729/1‑140 (MQ=255)
                                                   tCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCgtggt                                                                                <  2:232900/140‑1 (MQ=255)
                                                   tCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCgtggt                                                                                <  1:162900/140‑1 (MQ=255)
                                                   tCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCgtggt                                                                                <  1:1035556/140‑1 (MQ=255)
                                                   tCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCgtggt                                                                                <  1:2287055/140‑1 (MQ=255)
                                                   tCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCgtggt                                                                                <  2:1454051/140‑1 (MQ=255)
                                                   tCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCgtggt                                                                                >  2:542782/1‑140 (MQ=255)
                                                      gCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGaa                                                                             <  2:1435752/140‑1 (MQ=255)
                                                       cTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAAt                                                                            >  1:1436687/1‑140 (MQ=255)
                                                       cTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAAt                                                                            >  1:1278335/1‑140 (MQ=255)
                                                                    ccAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCg                                                               <  1:539716/140‑1 (MQ=255)
                                                                    ccAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCg                                                               <  2:1043694/140‑1 (MQ=255)
                                                                    acAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCg                                                               <  2:67437/139‑1 (MQ=255)
                                                                     cAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCgg                                                              <  2:2286852/140‑1 (MQ=255)
                                                                      aGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGt                                                             <  1:165887/140‑1 (MQ=255)
                                                                        tATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGa                                                           >  1:758255/1‑140 (MQ=255)
                                                                        tATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGa                                                           >  1:1849745/1‑140 (MQ=255)
                                                                        tATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGa                                                           >  1:1795625/1‑140 (MQ=255)
                                                                          tctcGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGc                                                         >  1:1307437/1‑140 (MQ=255)
                                                                           ctcGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCt                                                        <  2:570640/140‑1 (MQ=255)
                                                                             cGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTa                                                      >  1:1871260/1‑140 (MQ=255)
                                                                             cGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTa                                                      >  2:530997/1‑140 (MQ=255)
                                                                             cGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTa                                                      >  1:458242/1‑140 (MQ=255)
                                                                               ccTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTaaa                                                    >  2:1859828/1‑140 (MQ=255)
                                                                               ccTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTaaa                                                    >  2:932579/1‑140 (MQ=255)
                                                                                  gtgtATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAaataa                                                 >  2:1262276/1‑140 (MQ=255)
                                                                                   tgtATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAaataat                                                >  2:926755/1‑140 (MQ=255)
                                                                                   tgtATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAaataat                                                >  2:2003933/1‑140 (MQ=255)
                                                                                   tgtATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAaataat                                                >  2:1703763/1‑140 (MQ=255)
                                                                                   tgtATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAaataat                                                >  2:1138857/1‑140 (MQ=255)
                                                                                      ataATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCaa                                             <  2:1938706/140‑1 (MQ=255)
                                                                                        aaTCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAg                                           <  2:1575961/140‑1 (MQ=255)
                                                                                        aaTCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAg                                           >  2:1791335/1‑140 (MQ=255)
                                                                                         aTCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAgg                                          <  2:1871260/140‑1 (MQ=255)
                                                                                           ccAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCa                                        <  2:1126475/140‑1 (MQ=255)
                                                                                           ccAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCa                                        <  1:1171664/140‑1 (MQ=255)
                                                                                             aGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATa                                      >  1:1066378/1‑140 (MQ=255)
                                                                                             aGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATa                                      >  1:951273/1‑140 (MQ=255)
                                                                                             aGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATa                                      >  2:682146/1‑140 (MQ=255)
                                                                                             aGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATa                                      >  1:2267988/1‑140 (MQ=255)
                                                                                              gTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATaa                                     <  1:2196051/140‑1 (MQ=255)
                                                                                               tGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATaa                                     >  1:1718513/1‑139 (MQ=255)
                                                                                               tGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATaa                                     <  2:1718513/139‑1 (MQ=255)
                                                                                               tGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAAt                                    >  1:1206525/1‑140 (MQ=255)
                                                                                               tGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAAt                                    >  1:1445413/1‑140 (MQ=255)
                                                                                                   ttACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCAc                                <  1:679077/140‑1 (MQ=255)
                                                                                                   ttACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCAc                                <  1:530997/140‑1 (MQ=255)
                                                                                                    tACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCAcc                               >  1:1344394/1‑140 (MQ=255)
                                                                                                    tACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCAcc                               >  2:571569/1‑140 (MQ=255)
                                                                                                    tACCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCAcc                               <  2:1208159/140‑1 (MQ=255)
                                                                                                     aCCGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCa                              <  1:1250256/140‑1 (MQ=255)
                                                                                                      ccGTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCAt                             <  2:2297365/140‑1 (MQ=255)
                                                                                                        gTCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATgg                           <  2:458242/140‑1 (MQ=255)
                                                                                                         tCGCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATggt                          >  2:1876039/1‑139 (MQ=255)
                                                                                                           gCTACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCtt                        >  2:256612/1‑140 (MQ=255)
                                                                                                             tACCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTa                      <  2:1249555/140‑1 (MQ=255)
                                                                                                              aCCATGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTAt                     >  2:707259/1‑140 (MQ=255)
                                                                                                                  tGAAGATAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACg                 <  1:571569/140‑1 (MQ=255)
                                                                                                                       aTAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAAcg            <  1:1859828/140‑1 (MQ=255)
                                                                                                                       aTAAAATTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAAcg            >  1:338068/1‑140 (MQ=255)
                                                                                                                         aaaaTTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAAcgtt          >  2:1337085/1‑139 (MQ=255)
                                                                                                                         aaaaTTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAAcgtc          <  1:1138857/140‑1 (MQ=255)
                                                                                                                           aaTTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAAcgtcgt        <  1:302534/140‑1 (MQ=255)
                                                                                                                           aaTTCTCCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAAcgtcgt        >  1:30163/1‑140 (MQ=255)
                                                                                                                                tcCAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCt   >  2:216155/1‑140 (MQ=255)
                                                                                                                                 ccAATGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCtt  >  2:111250/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                       
CCTTTGAGGTAGATCCACCCCAGTTTACTTTGCGCGCGTGGATTTTCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAAGGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTT  >  NC_000913/679069‑679337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A