Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F48 I1 R1	75	141.5	4784044	99.1%	4740987	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	724,088	G→T	D109E (GAC→GAA)	kdpD ←	sensory histidine kinase KdpD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	724,088	0	G	T	100.0%	393.3 / NA	109	D109E (GAC→GAA)	kdpD	sensory histidine kinase KdpD
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (64/45); total (64/45)

Only 100 of 113 total aligned reads displayed.

ACCACATCATTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGCC  >  NC_000913/723954‑724224

aCCACATCATTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCAt                                                                                                                                     <  2:1421675/140‑1 (MQ=255)

 ccACATCATTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCAtt                                                                                                                                    <  2:287085/140‑1 (MQ=255)

     atcatTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAgt                                                                                                                                >  2:1303061/1‑139 (MQ=255)

     atcatTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGa                                                                                                                                >  2:2013533/1‑140 (MQ=255)

            aGACTTTCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAgcgc                                                                                                                         >  2:1955680/1‑140 (MQ=255)

              aCTTTCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCg                                                                                                                       <  2:2204208/140‑1 (MQ=255)

               cTTTCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGTCAGTTCTTCCATTAAGATCAGCGCCgg                                                                                                                      >  2:868612/1‑140 (MQ=255)

               cTTTCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGTCAGTTCTTCCATTAAGATCAGCGCCgg                                                                                                                      >  2:1889820/1‑140 (MQ=255)

                tttCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCggg                                                                                                                     <  2:1639968/140‑1 (MQ=255)

                tttCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCggg                                                                                                                     <  1:1955680/140‑1 (MQ=255)

                 ttCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGggc                                                                                                                    >  2:2378916/1‑140 (MQ=255)

                 ttCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGggc                                                                                                                    >  2:390602/1‑140 (MQ=255)

                  tCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGggcg                                                                                                                   >  1:1698282/1‑140 (MQ=255)

                   ccAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGggcgg                                                                                                                  <  2:1713334/140‑1 (MQ=255)

                   ccAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGggcgg                                                                                                                  <  1:98302/140‑1 (MQ=255)

                        tGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCggcgggc                                                                                                             >  2:371969/1‑140 (MQ=255)

                          cTGAACGTTGACGGTAGTGAAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCggcgggcg                                                                                                            >  2:1081607/1‑140 (MQ=255)

                          cTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGa                                                                                                           >  1:851362/1‑140 (MQ=255)

                          cTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGa                                                                                                           <  2:690579/140‑1 (MQ=255)

                          cTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGa                                                                                                           >  1:1428629/1‑140 (MQ=255)

                             aaCGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACTGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAggg                                                                                                        >  2:2345963/1‑140 (MQ=255)

                             aaCGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAggg                                                                                                        >  1:1815052/1‑140 (MQ=255)

                              aCGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGggc                                                                                                       >  2:1335852/1‑140 (MQ=255)

                               cGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGggcg                                                                                                      <  1:1769072/140‑1 (MQ=255)

                               cGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGAGCGGCGGGCGAGggcg                                                                                                      >  2:1546/1‑140 (MQ=255)

                                  tGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGggcggct                                                                                                   >  2:793699/1‑139 (MQ=255)

                                  tGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCa                                                                                                   >  1:1157197/1‑140 (MQ=255)

                                  tGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCa                                                                                                   <  1:1619167/140‑1 (MQ=255)

                                  tGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCa                                                                                                   >  2:1985755/1‑140 (MQ=255)

                                        tAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCgaga                                                                                             >  1:257381/1‑140 (MQ=255)

                                           tG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCa                                                                                          >  1:1124280/1‑140 (MQ=255)

                                           tG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCa                                                                                          <  1:2180135/140‑1 (MQ=255)

                                                aaCATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACt                                                                                      <  2:1170300/140‑1 (MQ=255)

                                                aaCATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACt                                                                                      <  1:1953492/140‑1 (MQ=255)

                                                   aTCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCgt                                                                                   >  2:613814/1‑139 (MQ=255)

                                                   aTCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGc                                                                                   >  2:2221420/1‑140 (MQ=255)

                                                      aaTGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGa                                                                                >  2:2110938/1‑140 (MQ=255)

                                                       aTGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGat                                                                               <  2:1065058/140‑1 (MQ=255)

                                                       aTGCCAGCTTCCAGCAGTTCTTCAAAATCCTGCCAGCGTTTGGGAAGACGGGAACATGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGat                                                                               <  2:1698282/140‑1 (MQ=255)

                                                        tGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCaaa                                                                                        <  1:1199762/130‑1 (MQ=255)

                                                            aGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc                                                                          <  1:1262628/140‑1 (MQ=255)

                                                              cTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccgc                                                                        <  1:2216606/140‑1 (MQ=255)

                                                               ttCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGTCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccgcc                                                                       <  1:1889820/140‑1 (MQ=255)

                                                               ttCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccgcc                                                                       <  1:2140693/140‑1 (MQ=255)

                                                               ttCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccgcc                                                                       <  1:1985755/140‑1 (MQ=255)

                                                               ttCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccgcc                                                                       <  2:1124280/140‑1 (MQ=255)

                                                                  cagcagTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCAc                                                                    <  1:1081607/140‑1 (MQ=255)

                                                                        ttcttcGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg                                                              >  2:2293661/1‑140 (MQ=255)

                                                                        ttcttcGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg                                                              >  1:1553480/1‑140 (MQ=255)

                                                                        ttcttcGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg                                                              >  1:1130134/1‑140 (MQ=255)

                                                                          cttcGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGcc                                                            >  2:2140642/1‑140 (MQ=255)

                                                                              gATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGTTGATATgccgc                                                                        <  1:1252615/124‑1 (MQ=255)

                                                                              gATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGTTGATATgccgc                                                                        >  2:1252615/1‑124 (MQ=255)

                                                                                  tCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGttt                                                    >  2:397557/1‑140 (MQ=255)

                                                                                  tCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGttt                                                    >  2:1313968/1‑140 (MQ=255)

                                                                                   ccTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGtttt                                                   <  2:1254032/140‑1 (MQ=255)

                                                                                   ccTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGtttt                                                   <  1:371969/140‑1 (MQ=255)

                                                                                   ccTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGtttt                                                   <  1:390602/140‑1 (MQ=255)

                                                                                   ccTGCCAGCGTTTGGGATGACGGGAACCAGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGtttt                                                   <  2:2240132/140‑1 (MQ=255)

                                                                                     tGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTaa                                                 >  1:852457/1‑140 (MQ=255)

                                                                                      gCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAAc                                                >  2:131789/1‑140 (MQ=255)

                                                                                       ccAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGATGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACg                                               >  1:622810/1‑140 (MQ=255)

                                                                                       ccAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACg                                               >  2:1259553/1‑140 (MQ=255)

                                                                                       ccAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACg                                               >  1:1976713/1‑140 (MQ=255)

                                                                                       ccAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACg                                               <  1:2345963/140‑1 (MQ=255)

                                                                                       ccAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACg                                               >  1:531193/1‑140 (MQ=255)

                                                                                       ccAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACg                                               >  1:495488/1‑140 (MQ=255)

                                                                                          gCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCa                                            >  1:1618646/1‑140 (MQ=255)

                                                                                          gCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCa                                            >  1:628149/1‑140 (MQ=255)

                                                                                            gTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGa                                          <  2:1553480/140‑1 (MQ=255)

                                                                                                  gATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcagcc                                    <  2:495488/140‑1 (MQ=255)

                                                                                                   aagACGGGAACCTGGCGCATTACTGGTCGCCAGTTCTTCCATTAAGATCATCGCCGGGCGGCGGTCGAGGGCGGCAACGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcagcca                                   <  2:1831273/138‑1 (MQ=255)

                                                                                                   aTGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcagcca                                   <  2:628149/140‑1 (MQ=255)

                                                                                                   aTGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcagcca                                   <  1:1546/140‑1 (MQ=255)

                                                                                                   aTGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCATGGCGTTTTAACGGCAGAAcagcca                                   <  2:1618646/140‑1 (MQ=255)

                                                                                                    tGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcagccag                                  <  1:2221420/140‑1 (MQ=255)

                                                                                                      aCGGGAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACagccagcc                                >  1:1831273/1‑140 (MQ=255)

                                                                                                         aagaacTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCtt                             >  1:2110685/6‑140 (MQ=255)

                                                                                                          gAACCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTc                            <  2:1815052/140‑1 (MQ=255)

                                                                                                            aCCTGGCGCATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCa                          >  2:2239956/1‑140 (MQ=255)

                                                                                                                 gcgcATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATg                     >  2:82671/1‑140 (MQ=255)

                                                                                                                  cgcATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATgg                    >  1:1625040/1‑140 (MQ=255)

                                                                                                                  cgcATTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATgg                    <  2:531193/140‑1 (MQ=255)

                                                                                                                     aTTACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATggcgg                 <  2:851362/140‑1 (MQ=255)

                                                                                                                      ttACTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATggcggc                >  1:834292/1‑140 (MQ=255)

                                                                                                                        aCTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGcggcgg              >  2:2276055/1‑140 (MQ=255)

                                                                                                                         cTGTGCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGt             <  1:2140642/140‑1 (MQ=255)

                                                                                                                            tgCGCCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATc          >  1:401458/1‑140 (MQ=255)

                                                                                                                             gcgcCAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt         >  1:252484/1‑140 (MQ=255)

                                                                                                                                 cAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGCTCAAACTCGCTGATATGCCGCCCACGGCACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTc     >  2:1355088/1‑140 (MQ=255)

                                                                                                                                 cAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCttttt     >  2:1115885/1‑139 (MQ=255)

                                                                                                                                 cAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTc     >  1:723604/1‑140 (MQ=255)

                                                                                                                                 cAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTc     >  1:1913987/1‑140 (MQ=255)

                                                                                                                                 cAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTc     >  2:1498100/1‑140 (MQ=255)

                                                                                                                                 cAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTc     >  1:265002/1‑140 (MQ=255)

                                                                                                                                 cAGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTc     >  2:219516/1‑140 (MQ=255)

                                                                                                                                  aGTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCg    <  1:1313968/140‑1 (MQ=255)

                                                                                                                                  aGTTCTTCCATTAAGATCAGCGCAGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCg    <  1:397557/140‑1 (MQ=255)

                                                                                                                                   gTTCTTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGc   >  1:266634/1‑140 (MQ=255)

                                                                                                                                    ttcttcCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGcc  >  1:930197/1‑140 (MQ=255)

ACCACATCATTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTG‑AAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGCC  >  NC_000913/723954‑724224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A