Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F48 I1 R1	75	141.5	4784044	99.1%	4740987	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	854,043	G→T	A133S (GCT→TCT)	ybiR →	putative transporter YbiR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	854,043	0	G	T	99.2%	481.3 / ‑3.9	134	A133S (GCT→TCT)	ybiR	putative transporter YbiR
Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (80/53); total (81/53)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01

Only 100 of 136 total aligned reads displayed.

GCGGCGGCGCTGCTTTCTACCTTTCTGACCAACGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACGCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACGCTCCTGCTCCTGTG  >  NC_000913/853908‑854179

gcggcggcgCTGCTTTCTACCTTTCTGACCAACGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTgg                                                                                                                                      >  2:1779365/1‑140 (MQ=255)

  ggcggcgCTGCTTTCTACCTTTCTGACCAACGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGtt                                                                                                                                    >  2:888954/1‑140 (MQ=255)

                 tACCTTTCTGACCAACGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCaa                                                                                                                     >  2:351383/1‑140 (MQ=255)

                    cTTTCTGACCAACGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTg                                                                                                                  >  2:944745/1‑140 (MQ=255)

                      ttCTGACCAACGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGc                                                                                                                >  2:1252972/1‑140 (MQ=255)

                        cTGACCAACGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCaa                                                                                                              >  1:680042/1‑140 (MQ=255)

                           aCCAACGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAAccc                                                                                                           >  2:377270/1‑140 (MQ=255)

                            acAACGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCg                                                                                                          <  2:680042/139‑1 (MQ=255)

                            acAACGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCg                                                                                                          <  2:1829017/139‑1 (MQ=255)

                              aaCGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCa                                                                                                        <  2:1358729/140‑1 (MQ=255)

                              aaCGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCa                                                                                                        <  2:1664940/140‑1 (MQ=255)

                              aaCGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCa                                                                                                        <  1:888954/140‑1 (MQ=255)

                                cGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCaaa                                                                                                      <  1:2215496/140‑1 (MQ=255)

                                cGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCaaa                                                                                                      <  1:972083/140‑1 (MQ=255)

                                cGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCaaa                                                                                                      <  1:680718/140‑1 (MQ=255)

                                     tCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATAtt                                                                                                 >  1:2341946/1‑140 (MQ=255)

                                     tCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATAtt                                                                                                 >  1:446147/1‑140 (MQ=255)

                                     tCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATAtt                                                                                                 <  1:1779365/140‑1 (MQ=255)

                                     tCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATAtt                                                                                                 >  2:2090084/1‑140 (MQ=255)

                                     tCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATAtt                                                                                                 >  2:740362/1‑140 (MQ=255)

                                      cgcgCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCTGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTc                                                                                                <  2:1586710/140‑1 (MQ=255)

                                      cgcgCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTc                                                                                                <  2:1641089/140‑1 (MQ=255)

                                              ttATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTgg                                                                                        <  2:2364971/140‑1 (MQ=255)

                                                aTTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTgggg                                                                                      <  2:1076830/140‑1 (MQ=255)

                                                       ttCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTTGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCt                                                                               >  1:356035/1‑140 (MQ=255)

                                                       ttCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTTACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCt                                                                               >  2:320148/1‑140 (MQ=255)

                                                       ttCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCt                                                                               >  2:1777845/1‑140 (MQ=255)

                                                       ttCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCt                                                                               >  2:178503/1‑140 (MQ=255)

                                                       ttCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCt                                                                               >  1:833071/1‑140 (MQ=255)

                                                       ttCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCt                                                                               >  1:781410/1‑140 (MQ=255)

                                                       ttCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCt                                                                               >  2:875630/1‑140 (MQ=255)

                                                       ttCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCt                                                                               >  2:953035/1‑140 (MQ=255)

                                                       ttCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCt                                                                               >  1:180929/1‑140 (MQ=255)

                                                       ttCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCt                                                                               >  1:1098751/1‑140 (MQ=255)

                                                       ttCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCt                                                                               >  1:1696938/1‑140 (MQ=255)

                                                       ttCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCt                                                                               >  1:154951/1‑140 (MQ=255)

                                                       ttCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCt                                                                               >  1:136739/1‑140 (MQ=255)

                                                         ccGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTgg                                                                             >  1:1159954/1‑140 (MQ=255)

                                                               aCTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTc                                                                       >  1:690521/1‑140 (MQ=255)

                                                                         tAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGa                                                             >  1:1468541/1‑140 (MQ=255)

                                                                           aaaaGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGAtt                                                           <  1:1777845/140‑1 (MQ=255)

                                                                                 cTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGc                                                     <  1:740362/140‑1 (MQ=255)

                                                                                   gtgtgAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGccc                                                   >  1:456502/1‑140 (MQ=255)

                                                                                   gtgtgAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGccc                                                   >  1:1597769/1‑140 (MQ=255)

                                                                                   gtgtgAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGccc                                                   >  2:320475/1‑140 (MQ=255)

                                                                                   gtgtgAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGccc                                                   >  1:2379432/1‑140 (MQ=255)

                                                                                     gtgAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCaa                                                 >  1:1492103/1‑140 (MQ=255)

                                                                                     gtgAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCaa                                                 >  2:435635/1‑140 (MQ=255)

                                                                                     gtgAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCaa                                                 >  1:1297349/1‑140 (MQ=255)

                                                                                     gtgAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCaa                                                 >  2:878724/1‑140 (MQ=255)

                                                                                      tgAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCaaa                                                >  2:1430633/1‑140 (MQ=255)

                                                                                         gaTCCCGGTTAATCGGCTGATTATTTTTTAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATgg                                             <  1:48914/140‑1 (MQ=255)

                                                                                         gaTCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATgg                                             <  1:2334523/140‑1 (MQ=255)

                                                                                         gaTCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATgg                                             <  1:944745/140‑1 (MQ=255)

                                                                                          aTCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGc                                            >  2:739568/1‑140 (MQ=255)

                                                                                          aTCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGc                                            >  2:2262881/1‑140 (MQ=255)

                                                                                              cGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCg                                        >  1:818481/1‑140 (MQ=255)

                                                                                              cGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCg                                        >  2:62826/1‑140 (MQ=255)

                                                                                              cGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCg                                        >  1:1858322/1‑140 (MQ=255)

                                                                                              cGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCg                                        <  2:356035/140‑1 (MQ=255)

                                                                                              cGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCg                                        >  2:1012439/1‑140 (MQ=255)

                                                                                              cGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCg                                        >  1:1524615/1‑140 (MQ=255)

                                                                                              cGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCACTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCg                                        >  2:872087/1‑140 (MQ=255)

                                                                                                gTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCgct                                      >  1:2201284/1‑140 (MQ=255)

                                                                                                  tAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCgctgg                                    >  1:1861885/1‑140 (MQ=255)

                                                                                                   aaTCGGCTTATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCgctggc                                   <  2:1541277/140‑1 (MQ=255)

                                                                                                   aaTCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCgctggc                                   <  1:2023948/140‑1 (MQ=255)

                                                                                                   aaTCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCgctggc                                   <  1:375967/140‑1 (MQ=255)

                                                                                                   aaTCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCgctggc                                   <  1:953035/140‑1 (MQ=255)

                                                                                                   aaTCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCgctggc                                   <  1:2090084/140‑1 (MQ=255)

                                                                                                   aaTCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTAACTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCgctggc                                   <  2:628188/140‑1 (MQ=255)

                                                                                                    aTCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCgctggct                                  >  2:2004526/1‑140 (MQ=255)

                                                                                                     tCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCgctggctg                                 >  1:773691/1‑140 (MQ=255)

                                                                                                        gCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGgcg                              <  2:1159954/140‑1 (MQ=255)

                                                                                                        gCTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGgcg                              >  2:538318/1‑140 (MQ=255)

                                                                                                         cTGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGgcgc                             >  2:1008786/1‑140 (MQ=255)

                                                                                                          tGATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCa                            >  1:1187669/1‑140 (MQ=255)

                                                                                                           gATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCaa                           <  2:2201284/140‑1 (MQ=255)

                                                                                                           gATTATTTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCaa                           <  2:848946/140‑1 (MQ=255)

                                                                                                             ttattTTTGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACACGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAatg                         <  2:1797959/140‑1 (MQ=255)

                                                                                                                  tttGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCt                    <  2:446147/140‑1 (MQ=255)

                                                                                                                   ttGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTg                   <  2:1301570/140‑1 (MQ=255)

                                                                                                                    tGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGa                  <  1:1012439/140‑1 (MQ=255)

                                                                                                                    tGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGa                  <  2:1524615/140‑1 (MQ=255)

                                                                                                                    tGAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGa                  <  2:254602/140‑1 (MQ=255)

                                                                                                                     gAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGAc                 <  1:2262881/140‑1 (MQ=255)

                                                                                                                     gAGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGAc                 >  1:1114338/1‑140 (MQ=255)

                                                                                                                     gAGGCGCTGGCAGTCAACGCTGGTTCGCTACTGACGCCAATTGGCAACGCGCAAAATATTCTTAGCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGAc                 <  2:891117/140‑1 (MQ=255)

                                                                                                                      aGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACg                >  2:1338228/1‑140 (MQ=255)

                                                                                                                      aGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACg                >  2:2317427/1‑140 (MQ=255)

                                                                                                                      aGGCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACg                >  2:2203703/1‑140 (MQ=255)

                                                                                                                       ggCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACgc               <  2:2379432/140‑1 (MQ=255)

                                                                                                                       ggCGCTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACgc               >  2:225514/1‑140 (MQ=255)

                                                                                                                        gcgcTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACgct              >  1:1661222/1‑140 (MQ=255)

                                                                                                                         cgcTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACgctc             <  2:1187669/140‑1 (MQ=255)

                                                                                                                          gcTGGCAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACgctcc            >  1:1419969/1‑140 (MQ=255)

                                                                                                                             ggCAGTCAACTCTGGTTCACTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACgctcctgc         <  1:872087/140‑1 (MQ=255)

                                                                                                                               cAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACgctcctgctc       <  2:1396685/140‑1 (MQ=255)

                                                                                                                               cAGTCAACTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACgctcctgctc       <  1:320148/140‑1 (MQ=255)

                                                                                                                                    aaCTCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACGCTCCTGCTCCtgtg  <  1:875630/140‑1 (MQ=255)

GCGGCGGCGCTGCTTTCTACCTTTCTGACCAACGATGTCGCGCTGTTTATTGTTGTTCCGCTGACTATCACGCTAAAAAGACTGTGTGAGATCCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACGCTGGTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATTGCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACGCTCCTGCTCCTGTG  >  NC_000913/853908‑854179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A