Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F48 I1 R1	66	101.5	3442112	98.9%	3404248	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	854,717	G→T	W357C (TGG→TGT)	ybiR →	putative transporter YbiR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	854,717	0	G	T	100.0%	328.5 / NA	93	W357C (TGG→TGT)	ybiR	putative transporter YbiR
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (47/46); total (47/46)

TGGTATGGGCGGTAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGGGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCATCCCGGAGC  >  NC_000913/854584‑854852

tGGTATGGGCGGTAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATGCCGATGCTGTTGTGTgcggcg                                                                                                                                   <  2:992352/140‑1 (MQ=255)

tGGTATGGGCGGTAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTgcggcg                                                                                                                                   <  1:775211/140‑1 (MQ=255)

tGGGATGGGCGGTAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTgcggcg                                                                                                                                   >  1:1464759/1‑140 (MQ=255)

 ggTATGGGCGGTAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTTTTGTGTGCGGCGt                                                                                                                                  >  2:342202/1‑140 (MQ=255)

  gTATGGGCGGTAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGtt                                                                                                                                 >  1:194188/1‑140 (MQ=255)

  gTATGGGCGGTAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGtt                                                                                                                                 >  2:530967/1‑140 (MQ=255)

    aTGGGCGGTAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTtgg                                                                                                                               <  2:822714/140‑1 (MQ=255)

    aTGGGCGGTAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTtgg                                                                                                                               >  2:1666072/1‑140 (MQ=255)

     tGGGCGGTAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGCATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTtggt                                                                                                                              <  1:1525694/140‑1 (MQ=255)

       ggCGGTAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCGAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTtggtgg                                                                                                                            >  2:1147267/1‑140 (MQ=255)

          ggTAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGat                                                                                                                         >  1:1496967/1‑140 (MQ=255)

            tAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGCTTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGatat                                                                                                                       >  2:362098/1‑140 (MQ=255)

            tAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGatat                                                                                                                       >  1:1109926/1‑140 (MQ=255)

                 gTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGtttt                                                                                                                  <  2:194188/140‑1 (MQ=255)

                 gTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGtttt                                                                                                                  <  2:271784/140‑1 (MQ=255)

                 gTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGtttt                                                                                                                  <  2:1334171/140‑1 (MQ=255)

                 atAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGtttt                                                                                                                  <  2:1304140/139‑1 (MQ=255)

                  tAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTg                                                                                                                 <  2:643418/140‑1 (MQ=255)

                  tAGGTGGCTTTGGGTGATTACCAGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCCAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTg                                                                                                                 <  2:1675571/140‑1 (MQ=255)

                   aGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTgt                                                                                                                <  2:1109926/140‑1 (MQ=255)

                   aGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTgt                                                                                                                <  1:312515/140‑1 (MQ=255)

                   aGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTgt                                                                                                                <  1:1666072/140‑1 (MQ=255)

                    ggTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTgtt                                                                                                               <  2:665681/140‑1 (MQ=255)

                     gTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTgtta                                                                                                              >  1:685985/1‑140 (MQ=255)

                         cTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTgttagtta                                                                                                          <  1:1520824/140‑1 (MQ=255)

                          tttGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTtat                                                                                                         >  2:717573/1‑140 (MQ=255)

                              ggTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTc                                                                                                     >  2:161701/1‑140 (MQ=255)

                                ttattaCCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTccc                                                                                                   <  2:362560/140‑1 (MQ=255)

                                 tattaCCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCg                                                                                                  <  2:1496967/140‑1 (MQ=255)

                                 tattaCCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCg                                                                                                  <  1:135637/140‑1 (MQ=255)

                                 tattaCCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCg                                                                                                  <  2:685985/140‑1 (MQ=255)

                                  attaCCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCgg                                                                                                 <  1:117313/140‑1 (MQ=255)

                                  attaCCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCgg                                                                                                 <  2:1668991/140‑1 (MQ=255)

                                   ttaCCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGc                                                                                                >  2:752824/1‑140 (MQ=255)

                                       ccGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTTTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAAc                                                                                            <  1:342202/140‑1 (MQ=255)

                                       ccGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAAc                                                                                            <  1:1147267/140‑1 (MQ=255)

                                       ccGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAAc                                                                                            <  2:1335522/140‑1 (MQ=255)

                                       ccGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAAc                                                                                            <  1:717573/140‑1 (MQ=255)

                                         ggATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTa                                                                                          >  2:41991/1‑140 (MQ=255)

                                         ggATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTa                                                                                          >  1:195005/1‑140 (MQ=255)

                                          gATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAg                                                                                         >  1:474477/1‑140 (MQ=255)

                                           aTCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAgg                                                                                        >  2:908705/1‑140 (MQ=255)

                                                tGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTg                                                                                   >  2:87733/1‑140 (MQ=255)

                                                tGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTg                                                                                   >  2:513622/1‑140 (MQ=255)

                                                            ttGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATaaaaaa                                                                       <  1:513622/140‑1 (MQ=255)

                                                            ttGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATaaaaaa                                                                       <  2:903409/140‑1 (MQ=255)

                                                            ttGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATaaaaaa                                                                       >  1:1171597/1‑140 (MQ=255)

                                                              gcgcTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATCCTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAgg                                                                     <  1:1198284/140‑1 (MQ=255)

                                                              gcgcTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAgg                                                                     <  1:1124770/140‑1 (MQ=255)

                                                              gcgcTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAgg                                                                     <  1:387619/140‑1 (MQ=255)

                                                              gcgcTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAgg                                                                     <  2:1499807/140‑1 (MQ=255)

                                                              gcgcTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAgg                                                                     <  1:151643/140‑1 (MQ=255)

                                                                gcTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCg                                                                   <  2:474477/140‑1 (MQ=255)

                                                                 cTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCgg                                                                  >  2:297906/1‑140 (MQ=255)

                                                                  tACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCggt                                                                 >  2:453883/1‑139 (MQ=255)

                                                                         ggCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAg                                                          >  1:378318/1‑140 (MQ=255)

                                                                          gCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGt                                                         <  1:61325/140‑1 (MQ=255)

                                                                              aCGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGc                                                     >  1:890627/1‑140 (MQ=255)

                                                                              aCGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGc                                                     >  2:1536905/1‑140 (MQ=255)

                                                                              aCGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGc                                                     >  2:564551/1‑140 (MQ=255)

                                                                              aCGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGc                                                     >  1:1545291/1‑140 (MQ=255)

                                                                              aCGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGc                                                     >  2:960695/1‑140 (MQ=255)

                                                                              aCGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGc                                                     >  1:363652/1‑140 (MQ=255)

                                                                                    gccgcATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTg                                               >  1:1483729/1‑140 (MQ=255)

                                                                                        cATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCttt                                           <  1:564551/140‑1 (MQ=255)

                                                                                                ggCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTg                                   <  2:378318/140‑1 (MQ=255)

                                                                                                  cGTTTCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGaa                                 <  1:1587193/140‑1 (MQ=255)

                                                                                                    tttCCATCTCTATTCAATACCGATGCTGTTGTGTGAGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAATTAAAAAAGGCTGTTTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGa                               >  2:1150230/1‑140 (MQ=255)

                                                                                                     ttCCATCTCTATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGAt                              <  1:161701/140‑1 (MQ=255)

                                                                                                              tATTCAATACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGa                     <  1:297906/140‑1 (MQ=255)

                                                                                                                     tACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCg              >  1:103019/1‑140 (MQ=255)

                                                                                                                     tACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCg              <  2:634863/140‑1 (MQ=255)

                                                                                                                     tACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCg              >  2:614457/1‑140 (MQ=255)

                                                                                                                     tACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCg              >  1:1441436/1‑140 (MQ=255)

                                                                                                                     tACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCg              >  2:792693/1‑140 (MQ=255)

                                                                                                                     tACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCg              >  2:882052/1‑140 (MQ=255)

                                                                                                                     tACCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCg              >  1:1570179/1‑140 (MQ=255)

                                                                                                                      aCCGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCgg             <  1:752824/140‑1 (MQ=255)

                                                                                                                        cGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGct           >  2:489331/1‑139 (MQ=255)

                                                                                                                        cGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCa           <  1:1057150/140‑1 (MQ=255)

                                                                                                                        cGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCa           <  1:882052/140‑1 (MQ=255)

                                                                                                                        cGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCa           >  1:526760/1‑140 (MQ=255)

                                                                                                                        cGATGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCa           >  1:1200560/1‑140 (MQ=255)

                                                                                                                          aTGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCATc         >  2:440336/1‑140 (MQ=255)

                                                                                                                          aTGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCATc         >  2:1668426/1‑140 (MQ=255)

                                                                                                                          aTGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCATc         >  2:833858/1‑140 (MQ=255)

                                                                                                                          aTGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCATc         >  1:527523/1‑140 (MQ=255)

                                                                                                                          aTGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCATc         >  1:1200462/1‑140 (MQ=255)

                                                                                                                          aTGCTGTTGTGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCATc         >  1:1064370/1‑140 (MQ=255)

                                                                                                                                ttgtGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCATCCCGGAg   <  1:908705/140‑1 (MQ=255)

                                                                                                                                ttgtGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCATCCCGGAg   <  2:753356/140‑1 (MQ=255)

                                                                                                                                ttgtGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCATCCCGGAg   >  1:802646/1‑140 (MQ=255)

                                                                                                                                ttgtGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCATCCCGGAg   <  1:680112/140‑1 (MQ=255)

                                                                                                                                ttgtGTGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCATCCCGGAg   <  1:1536905/140‑1 (MQ=255)

                                                                                                                                 tgtgtgCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCATCCCGGAGc  <  2:890627/140‑1 (MQ=255)

TGGTATGGGCGGTAAACGTAGGTGGCTTTGGGTTATTACCCGGATCGCTGGCAAATTTGATTGCGCTACGTATGGCGAACGATCGCCGCATCTGGTGGCGTTTCCATCTCTATTCAATACCGATGCTGTTGTGGGCGGCGTTGGTGGGATATGTTTTGTTAGTTATACTCCCGGCCAACTAGGGTCTGGCAAATAAAAAAGGCGGATTATGAGTCCGCCTTTTGCTTTAAGTTTTGAAGATTAATTCAGACGAACCGGCATCCCGGAGC  >  NC_000913/854584‑854852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A