Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F48 I1 R1 62 93.4 3176452 99.2% 3151040 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 863,883 A→G D81G (GAT→GGT)  fsaA → fructose‑6‑phosphate aldolase 1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913863,8830AG98.8% 314.5 / NA 85D81G (GAT→GGT) fsaAfructose‑6‑phosphate aldolase 1
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (42/42);  minor base T (0/1);  total (42/43)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AAAAACCGCTGGATGTTGTGCTTCCGCAACTTCATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGATATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTGGCAGGTGCGGA  >  NC_000913/863748‑864018
                                                                                                                                       |                                                                                                                                       
aaaaaCCGCTGGATGTTGTGCTTCCGCAACTTCATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATc                                                                                                                                     <  1:419592/140‑1 (MQ=255)
  aaaCCGCTGGATGTTGTGCTTCCGCAACTTCATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCgt                                                                                                                                   <  2:811922/140‑1 (MQ=255)
       gCTGGATGTTGTGCTTCCGCAACTTCATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGa                                                                                                                              <  1:1024057/140‑1 (MQ=255)
       gCTGGATGTTGTGCTTCCGCAACTTCATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGa                                                                                                                              <  1:1154416/140‑1 (MQ=255)
            aTGTTGTGCTTCCGCAACTTCATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGtt                                                                                                                         <  2:117790/140‑1 (MQ=255)
                tgtgCTTCCGCAACTTCATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCgg                                                                                                                     >  1:32833/1‑140 (MQ=255)
                 gtgCTTCCGCAGTTTCATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGt                                                                                                                    <  1:899580/140‑1 (MQ=255)
                     ttCCGCAACTTCATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGAcc                                                                                                                >  1:1218877/1‑140 (MQ=255)
                      tCCGCAACTTCATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGAccg                                                                                                               >  2:1352215/1‑140 (MQ=255)
                        cGCAACTTCAGGAAGCGATGGGCGGGAAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCCCTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAGGTTCCGGTGgccgcc                                                                                                             <  2:1432436/140‑1 (MQ=255)
                         gCAACTTCATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGAccgccg                                                                                                            <  1:1043342/140‑1 (MQ=255)
                           aaCTTCATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAg                                                                                                          <  1:255180/140‑1 (MQ=255)
                               tCATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGc                                                                                                      >  1:1401264/1‑140 (MQ=255)
                                cATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCt                                                                                                     >  1:501914/1‑140 (MQ=255)
                                cATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCt                                                                                                     >  1:1296604/1‑140 (MQ=255)
                                  tGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTgg                                                                                                   <  2:1296604/140‑1 (MQ=255)
                                  tGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTgg                                                                                                   <  1:1352215/140‑1 (MQ=255)
                                   gAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCCCTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGc                                                                                                  <  1:239737/140‑1 (MQ=255)
                                   gAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGc                                                                                                  <  1:189950/140‑1 (MQ=255)
                                   gAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGc                                                                                                  <  1:969983/140‑1 (MQ=255)
                                   gAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGc                                                                                                  <  2:919497/140‑1 (MQ=255)
                                   gAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCACTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGc                                                                                                  <  1:1494842/140‑1 (MQ=255)
                                   aaaGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGc                                                                                                  <  2:511543/139‑1 (MQ=255)
                                   aaaGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTAAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGc                                                                                                  <  2:185840/139‑1 (MQ=255)
                                       cGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCt                                                                                              >  2:9093/1‑140 (MQ=255)
                                        gATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCtt                                                                                             >  2:1348705/1‑139 (MQ=255)
                                          tGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTAtt                                                                                           >  2:1196207/1‑140 (MQ=255)
                                           gggCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTa                                                                                          >  2:610300/1‑140 (MQ=255)
                                            ggCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTaa                                                                                         <  1:9093/140‑1 (MQ=255)
                                            ggCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTaa                                                                                         <  1:1289084/140‑1 (MQ=255)
                                            ggCGGTCAGGGGCGTCTGTTGGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTaa                                                                                         <  1:821555/140‑1 (MQ=255)
                                             gCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAg                                                                                        <  1:1408109/140‑1 (MQ=255)
                                               ggTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTAtt                                                                                           >  2:360381/1‑135 (MQ=255)
                                               ggTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTAtt                                                                                           <  1:360381/135‑1 (MQ=255)
                                                 tCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGt                                                                                    >  2:1231211/1‑140 (MQ=255)
                                                 tCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGt                                                                                    >  2:1477357/1‑140 (MQ=255)
                                                       gCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGCGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAg                                                                              >  1:1484778/1‑140 (MQ=255)
                                                        cGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGc                                                                             >  2:530294/1‑140 (MQ=255)
                                                          tCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCgg                                                                           >  1:779986/1‑140 (MQ=255)
                                                           cTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGa                                                                          >  2:731686/1‑140 (MQ=255)
                                                           cTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGa                                                                          <  1:1156830/140‑1 (MQ=255)
                                                            tGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGaa                                                                         <  2:1401264/140‑1 (MQ=255)
                                                                tGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGa                                                                     >  1:705497/1‑140 (MQ=255)
                                                                       gTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGAc                                                              >  2:57280/1‑140 (MQ=255)
                                                                           tGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCtt                                                          >  2:76450/1‑139 (MQ=255)
                                                                            ggCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGGATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTgg                                                         >  2:1243861/1‑140 (MQ=255)
                                                                               tACCACTGCCGAAGGGATGGTTAATGACGCGTTTAAGCTGCGTTGTATTATTGCGGGTATCGTGGTAAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGaa                                                      <  1:728847/140‑1 (MQ=255)
                                                                               tACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGaa                                                      <  1:610300/140‑1 (MQ=255)
                                                                               tACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGaa                                                      <  2:687700/140‑1 (MQ=255)
                                                                               tACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGaa                                                      <  1:1231211/140‑1 (MQ=255)
                                                                                 ccACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGTTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAAcc                                                    >  2:194241/1‑140 (MQ=255)
                                                                                  cACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACcg                                                   <  1:53028/140‑1 (MQ=255)
                                                                                    cTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACcgcg                                                 <  1:1495791/140‑1 (MQ=255)
                                                                                       ccGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCggaa                                              >  1:924219/1‑138 (MQ=255)
                                                                                       ccGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGta                                              >  2:1423671/1‑140 (MQ=255)
                                                                                       ccGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGta                                              >  1:1026461/1‑140 (MQ=255)
                                                                                       ccGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGta                                              >  2:259257/1‑140 (MQ=255)
                                                                                       ccGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGta                                              >  1:1550745/1‑140 (MQ=255)
                                                                                         gAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGTTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGtata                                            <  1:194241/140‑1 (MQ=255)
                                                                                              gATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGgcg                                       <  1:1348705/140‑1 (MQ=255)
                                                                                              gATGGTTAAAGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAGGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGgcg                                       <  1:74701/140‑1 (MQ=255)
                                                                                                 ggTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCgcag                                    >  1:1194767/1‑140 (MQ=255)
                                                                                                 ggTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCgcag                                    >  1:1077110/1‑140 (MQ=255)
                                                                                                     aaTGACGCGCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGcaca                                >  1:740464/1‑140 (MQ=255)
                                                                                                          cgcgCTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGgc                           <  2:1504571/140‑1 (MQ=255)
                                                                                                           gcgcTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGgct                          >  2:1325050/1‑140 (MQ=255)
                                                                                                            cgcTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGgctg                         >  1:833556/1‑140 (MQ=255)
                                                                                                            cgcTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGgctg                         >  1:577499/1‑140 (MQ=255)
                                                                                                            cgcTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGgctg                         >  1:1064806/1‑140 (MQ=255)
                                                                                                             gcTTAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGCTAAAAGCGGCAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGgctgc                        >  1:1260972/1‑140 (MQ=255)
                                                                                                                tAAGCTGCGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGt                     <  1:905315/140‑1 (MQ=255)
                                                                                                                       cGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCt              >  2:1394979/1‑140 (MQ=255)
                                                                                                                       cGTTCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCt              <  2:577499/140‑1 (MQ=255)
                                                                                                                         ttCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTgg            >  1:197643/1‑140 (MQ=255)
                                                                                                                         ttCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTgg            >  1:1051379/1‑140 (MQ=255)
                                                                                                                         ttCTATTATTGCGGGTATCGTGGTGAAAGGTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTgg            >  1:1404451/1‑140 (MQ=255)
                                                                                                                         ttCTATTATTGCGGGTATCGGGGAGAAAGTTCCGGGTACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTgg            <  2:1550745/140‑1 (MQ=255)
                                                                                                                          tCTATTATTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTGGc           <  1:1385167/140‑1 (MQ=255)
                                                                                                                            tattatTGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTGGCAg         <  2:740464/140‑1 (MQ=255)
                                                                                                                              ttattGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTGGCAGGt       <  1:1325050/140‑1 (MQ=255)
                                                                                                                              ttattGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTGGCAGGt       <  1:1196207/140‑1 (MQ=255)
                                                                                                                               tattGCGGTTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTGGCAGGTg      <  2:1484778/140‑1 (MQ=255)
                                                                                                                               tattGCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTGGCAGGTg      <  2:1129146/140‑1 (MQ=255)
                                                                                                                                   gCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTGGCAgg        <  1:1214839/134‑1 (MQ=255)
                                                                                                                                   gCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTGGCAgg        >  2:1214839/1‑134 (MQ=255)
                                                                                                                                   gCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTGGCAGGTGCGGa  >  1:189332/1‑140 (MQ=255)
                                                                                                                                   gCGGGTATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTGGCAGGTGCGGa  >  2:107927/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                       
AAAAACCGCTGGATGTTGTGCTTCCGCAACTTCATGAAGCGATGGGCGGTCAGGGGCGTCTGTTTGCCCAGGTAATGGCTACCACTGCCGAAGGGATGGTTAATGACGCGCTTAAGCTGCGTTCTATTATTGCGGATATCGTGGTGAAAGTTCCGGTGACCGCCGAGGGGCTGGCAGCTATTAAGATGTTAAAAGCGGAAGGGATTCCGACGCTGGGAACCGCGGTATATGGCGCAGCACAAGGGCTGCTGTCGGCGCTGGCAGGTGCGGA  >  NC_000913/863748‑864018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A