Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F48 I1 R1	62	147.6	5031800	99.1%	4986513	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	867,888	G→T	V123V (GTG→GTT)	gsiA →	glutathione ABC transporter ATP binding subunit GsiA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	867,888	0	G	T	100.0%	428.4 / NA	120	V123V (GTG→GTT)	gsiA	glutathione ABC transporter ATP binding subunit GsiA
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (55/65); total (55/65)

Only 100 of 122 total aligned reads displayed.

TGCTGTTGCAGCGGCGCAGTCGCGAAGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTGGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCTTTCACGTTATCCGCATCA  >  NC_000913/867752‑868022

tGCTGTTGCAGCGGCGCAGTCGCGAAGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGt                                                                                                                                     >  2:120916/1‑140 (MQ=255)

 gCTGTTGCAGCGGCGCAGTCGCGAAGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTg                                                                                                                                    <  2:2261253/140‑1 (MQ=255)

 gCTGTTGCAGCGGCGCAGTCGCGAAGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTg                                                                                                                                    <  2:1299762/140‑1 (MQ=255)

   tGTTGCAGCGGCGCAGTCGCGAAGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGaa                                                                                                                                  >  1:1145129/1‑140 (MQ=255)

       gCAGCGGCGCAGTCGCGAAGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGa                                                                                                                              >  1:1523581/1‑140 (MQ=255)

            ggcgCAGTCGCGAAGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGcc                                                                                                                         <  1:1982423/140‑1 (MQ=255)

             gcgcAGTCGCGAAGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCg                                                                                                                        >  1:1045045/1‑140 (MQ=255)

                    cgcgAAGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAAt                                                                                                                 <  2:181937/140‑1 (MQ=255)

                    cgcgAAGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAAt                                                                                                                 <  2:1365588/140‑1 (MQ=255)

                      cgAAGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTc                                                                                                               <  2:16664/140‑1 (MQ=255)

                      cgAAGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTc                                                                                                               <  1:2375804/140‑1 (MQ=255)

                      cgAAGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCG‑TGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCg                                                                                                              <  1:1586260/140‑1 (MQ=255)

                        aaGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGt                                                                                                             <  1:1088244/140‑1 (MQ=255)

                           tGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTg                                                                                                          <  1:390092/140‑1 (MQ=255)

                             aTTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCa                                                                                                        >  2:2010421/1‑140 (MQ=255)

                             aTTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCa                                                                                                        >  2:2041072/1‑140 (MQ=255)

                             aTTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCa                                                                                                        >  1:126996/1‑140 (MQ=255)

                              ttGAACTTAGCGAGCAGAATGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCAt                                                                                                       <  1:483754/140‑1 (MQ=255)

                              ttGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCAt                                                                                                       <  2:1763279/140‑1 (MQ=255)

                              ttGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCAt                                                                                                       <  2:2082896/140‑1 (MQ=255)

                              ttGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCAt                                                                                                       <  1:2071768/140‑1 (MQ=255)

                                    ttAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAAc                                                                                                 >  2:981396/1‑140 (MQ=255)

                                    ttAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAAc                                                                                                 <  1:2041072/140‑1 (MQ=255)

                                     tAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAAct                                                                                                >  2:133226/1‑139 (MQ=255)

                                     tAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACg                                                                                                >  1:1806006/1‑140 (MQ=255)

                                      aGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGc                                                                                               <  2:1145129/140‑1 (MQ=255)

                                      aGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGc                                                                                               >  1:561368/1‑140 (MQ=255)

                                        cGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGTTGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCa                                                                                             >  2:219376/1‑140 (MQ=255)

                                        cGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCa                                                                                             >  1:1751288/1‑140 (MQ=255)

                                        cGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCa                                                                                             >  2:2080705/1‑140 (MQ=255)

                                         gAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAg                                                                                            <  2:1265395/140‑1 (MQ=255)

                                           gCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTc                                                                                          <  1:2341808/140‑1 (MQ=255)

                                            cAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCg                                                                                         >  2:1239878/1‑140 (MQ=255)

                                            cAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCg                                                                                         <  2:1898067/140‑1 (MQ=255)

                                                aCGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTgaa                                                                                     <  1:2482836/140‑1 (MQ=255)

                                                 agCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTgaag                                                                                    <  2:97036/139‑1 (MQ=255)

                                                      cacaAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCg                                                                               >  2:1375291/1‑140 (MQ=255)

                                                      cacaAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCg                                                                               >  1:921866/1‑140 (MQ=255)

                                                      cacaAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCg                                                                               >  2:1389393/1‑140 (MQ=255)

                                                      aacaAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACTTCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCg                                                                               <  2:2141303/139‑1 (MQ=255)

                                                      aacaAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTAGTGAAGAAGCg                                                                               <  2:1980623/139‑1 (MQ=255)

                                                         aaaTGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGAtt                                                                            >  2:672510/1‑139 (MQ=255)

                                                         aaaTGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATg                                                                            >  2:1667924/1‑140 (MQ=255)

                                                            tGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTc                                                                         <  1:1389393/140‑1 (MQ=255)

                                                                ccATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGGTGGCATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAgg                                                                     >  2:1675534/1‑140 (MQ=255)

                                                                ccATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAgg                                                                     >  1:1412035/1‑140 (MQ=255)

                                                                   tGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATTGTCGAGGTGa                                                                  >  1:1947450/1‑140 (MQ=255)

                                                                     ttCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAg                                                                >  2:537886/1‑140 (MQ=255)

                                                                      tCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGc                                                               <  1:994044/140‑1 (MQ=255)

                                                                      tCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGc                                                               <  1:2080705/140‑1 (MQ=255)

                                                                      tCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGc                                                               <  1:111402/140‑1 (MQ=255)

                                                                       cgcgGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCg                                                              <  1:2010421/140‑1 (MQ=255)

                                                                       cgcgGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCg                                                              <  1:1667924/140‑1 (MQ=255)

                                                                        gcgGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCgg                                                             <  1:2081510/140‑1 (MQ=255)

                                                                          ggTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGAt                                                           <  2:1806006/140‑1 (MQ=255)

                                                                             gCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCt                                                        >  1:1376077/1‑140 (MQ=255)

                                                                              cGGATATGGCGATGATATTTCATGAGCCTATGTCATCGCTGAATCCGGTATTTACTGTTGGTGAACAAGTTGCCGAATCAATTCGTCTGCATCAAAACGCCAGTCGTGAAGAAGCGATGGTAGAGTCGAAGCGGATGCtt                                                       >  2:354459/1‑139 (MQ=255)

                                                                                    tGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAg                                                 <  1:128434/140‑1 (MQ=255)

                                                                                      gCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGt                                               >  1:2291623/1‑140 (MQ=255)

                                                                                      gCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGGATTTACTGTTGGTGAACATATTGCCGAATCAATTTGCCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGt                                               >  2:1636237/1‑140 (MQ=255)

                                                                                         atgatATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACg                                            >  2:2492246/1‑140 (MQ=255)

                                                                                           gatATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCa                                          >  1:2269271/1‑140 (MQ=255)

                                                                                            atatTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCAt                                         <  1:1340119/140‑1 (MQ=255)

                                                                                               tttCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTcc                                      <  1:1239878/140‑1 (MQ=255)

                                                                                                ttCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCt                                     >  1:1612688/1‑140 (MQ=255)

                                                                                                ttCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCt                                     <  2:1376077/140‑1 (MQ=255)

                                                                                                ttCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCt                                     <  1:219376/140‑1 (MQ=255)

                                                                                                ttCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCt                                     <  2:1453397/140‑1 (MQ=255)

                                                                                                ttCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCt                                     <  2:856676/140‑1 (MQ=255)

                                                                                                ttCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCt                                     <  1:1110579/140‑1 (MQ=255)

                                                                                                 tCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTg                                    >  2:1303869/1‑140 (MQ=255)

                                                                                                    ggAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAgg                                 >  1:2312489/1‑140 (MQ=255)

                                                                                                     gAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGc                                >  1:1501023/1‑140 (MQ=255)

                                                                                                     gAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGc                                >  1:2152457/1‑140 (MQ=255)

                                                                                                     gAGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGc                                <  1:728002/140‑1 (MQ=255)

                                                                                                      aGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGca                               <  1:260163/140‑1 (MQ=255)

                                                                                                      aGCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGca                               <  2:1880633/140‑1 (MQ=255)

                                                                                                       gCCGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGcac                              <  1:537886/140‑1 (MQ=255)

                                                                                                        ccGATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTCCg                                            <  1:1726346/125‑1 (MQ=255)

                                                                                                          gATGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACaaa                           >  1:768309/1‑140 (MQ=255)

                                                                                                           aTGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAAc                          >  1:2011297/1‑140 (MQ=255)

                                                                                                           aTGACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAAc                          >  1:415449/1‑140 (MQ=255)

                                                                                                             gACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCa                        <  1:757216/140‑1 (MQ=255)

                                                                                                             gACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCa                        <  1:981396/140‑1 (MQ=255)

                                                                                                             gACATCGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCa                        <  2:2312489/140‑1 (MQ=255)

                                                                                                                  cGCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCtt                   >  1:1318585/1‑140 (MQ=255)

                                                                                                                  cGCTGAACCCGGTACTTACTGTTGATGAACAGATTGCCGAATCAATTCGTCTGCATCAGCACGCCAGTCGTGAAGAAGCGCTGGTCGCGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCtt                   >  1:597124/1‑140 (MQ=255)

                                                                                                                  agCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTATGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCtt                   <  2:597124/139‑1 (MQ=255)

                                                                                                                   gCTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCttt                  <  2:126996/140‑1 (MQ=255)

                                                                                                                    cTGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCTTTc                 >  1:869719/1‑140 (MQ=255)

                                                                                                                     tGAACCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCTTTCa                >  1:890612/1‑140 (MQ=255)

                                                                                                                       aaCCCGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCTTTCAct              >  2:1324404/1‑139 (MQ=255)

                                                                                                                         cccGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCTTTCACGtt            >  2:379157/1‑140 (MQ=255)

                                                                                                                          ccGGTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCTTTCACGTTa           <  2:2043842/140‑1 (MQ=255)

                                                                                                                            ggTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCTTTCACGTTATc         <  1:1282258/140‑1 (MQ=255)

                                                                                                                            ggTATTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCTTTCACGTTATc         <  1:2129129/140‑1 (MQ=255)

                                                                                                                               aTTTACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCTTTCACGTTATCCGc      <  2:252335/140‑1 (MQ=255)

                                                                                                                                 ttACTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCTTTCACGTTATCCGCAt    <  2:2152457/140‑1 (MQ=255)

                                                                                                                                   aCTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCTTTCACGTTATCCGCATCa  >  2:80002/1‑140 (MQ=255)

                                                                                                                                   aCTGTTGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCTTTCACGTTATCCGCATCa  >  1:1893908/1‑140 (MQ=255)

TGCTGTTGCAGCGGCGCAGTCGCGAAGTGATTGAACTTAGCGAGCAGAACGCTGCACAAATGCGCCATGTTCGCGGTGCGGATATGGCGATGATATTTCAGGAGCCGATGACATCGCTGAACCCGGTATTTACTGTGGGTGAACAGATTGCCGAATCAATTCGTCTGCATCAGAACGCCAGTCGTGAAGAAGCGATGGTCGAGGCGAAGCGGATGCTGGATCAGGTACGCATTCCTGAGGCACAAACCATTCTTTCACGTTATCCGCATCA  >  NC_000913/867752‑868022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A