Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F48 I1 R1	75	141.5	4784044	99.1%	4740987	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	903,928	G→T	intergenic (‑194/+24)	artP ← / ← ybjP	L‑arginine ABC transporter ATP binding subunit/DUF3828 domain‑containing lipoprotein YbjP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	903,928	0	G	T	99.1%	412.8 / ‑6.0	116	intergenic (‑194/+24)	artP/ybjP	L‑arginine ABC transporter ATP binding subunit/DUF3828 domain‑containing lipoprotein YbjP
Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (76/39); minor base A (1/0); total (77/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 141 total aligned reads displayed.

AGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCAT  >  NC_000913/903792‑904067

aGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACtggt                                                                                                                                             >  2:84918/1‑139 (MQ=255)

  aataatTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATTTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGtt                                                                                                                                           >  1:2209196/1‑140 (MQ=255)

  aataatTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACAGGGtt                                                                                                                                           >  2:1474676/1‑140 (MQ=255)

   ataatTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGttt                                                                                                                                          <  1:700683/140‑1 (MQ=255)

    taatTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTa                                                                                                                                         <  1:1179407/140‑1 (MQ=255)

     aatTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTAt                                                                                                                                        <  2:1668096/140‑1 (MQ=255)

       ttATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATTTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTg                                                                                                                                      <  2:2209196/140‑1 (MQ=255)

        tATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTgg                                                                                                                                     <  1:936989/140‑1 (MQ=255)

         aTGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGt                                                                                                                                    <  2:394592/140‑1 (MQ=255)

         aTGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGt                                                                                                                                    <  1:1058261/140‑1 (MQ=255)

         aTGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGt                                                                                                                                    <  1:476933/140‑1 (MQ=255)

          tGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGtt                                                                                                                                   >  1:2231136/1‑140 (MQ=255)

            cAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTgt                                                                                                                                 >  2:170900/1‑139 (MQ=255)

            cAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGa                                                                                                                                 >  1:676240/1‑140 (MQ=255)

            cAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGa                                                                                                                                 >  1:1834978/1‑140 (MQ=255)

             aaTATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑t                                                                                                                               <  1:244060/140‑1 (MQ=255)

               tatTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCa                                                                                                                             >  2:768142/1‑140 (MQ=255)

               tatTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCa                                                                                                                             <  1:258113/140‑1 (MQ=255)

               tatTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCa                                                                                                                             <  1:1956178/140‑1 (MQ=255)

               tatTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCa                                                                                                                             >  2:4746/1‑140 (MQ=255)

                atTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGGGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCaa                                                                                                                            <  2:353116/140‑1 (MQ=255)

                atTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCaa                                                                                                                            <  1:1868853/140‑1 (MQ=255)

                 tttCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAg                                                                                                                           >  2:1754667/1‑140 (MQ=255)

                  ttCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAgg                                                                                                                          >  1:1642504/1‑140 (MQ=255)

                    cTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGttt                                                                                                                                          <  2:652503/123‑1 (MQ=255)

                    cTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCg                                                                                                                        >  1:193533/1‑140 (MQ=255)

                      gCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGtt                                                                                                                      <  2:132956/140‑1 (MQ=255)

                       cTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTa                                                                                                                     >  1:69513/1‑140 (MQ=255)

                        tttAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAg                                                                                                                    <  1:1588952/140‑1 (MQ=255)

                         ttaaaagttaaaagCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGc                                                                                                                   >  1:1770675/1‑140 (MQ=255)

                         ttaaaagttaaaagCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGc                                                                                                                   >  1:251052/1‑140 (MQ=255)

                          taaaagttaaaagCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCg                                                                                                                  >  1:41453/1‑140 (MQ=255)

                          taaaagttaaaagCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCg                                                                                                                  <  1:768142/140‑1 (MQ=255)

                            aaagttaaaagCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGAt                                                                                                                <  1:1436120/140‑1 (MQ=255)

                            aaagttaaaagCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGAt                                                                                                                <  1:562261/140‑1 (MQ=255)

                                ttaaaagCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATtctc                                                                                                            <  1:376481/140‑1 (MQ=255)

                                ttaaaagCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATtctc                                                                                                            <  2:1363125/140‑1 (MQ=255)

                                 taaaatCAAAGAGCCTTATTCAATAAACATAGCACAAAATAACGAGGGCGGTGTTAGGCGAGCCTAAATGACGGTATTCCTCACGAAATGCCGGACAATTTACTGGGCTTATTGGTTGA‑TCAAGGCTCTAGCGATtcttg                                                                                                           >  2:745829/1‑138 (MQ=255)

                                  aaaagCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑a                                                                                                         <  2:166060/140‑1 (MQ=255)

                                  aaaagCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑a                                                                                                         <  1:1474676/140‑1 (MQ=255)

                                     agcaaagcGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATgg                                                                                                      <  1:2001554/140‑1 (MQ=255)

                                          agcGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGa                                                                                                <  1:394889/140‑1 (MQ=255)

                                          agcGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGa                                                                                                >  2:1520465/1‑140 (MQ=255)

                                          agcGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGa                                                                                                <  1:1520465/140‑1 (MQ=255)

                                           gcgcATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGAc                                                                                               <  1:190510/140‑1 (MQ=255)

                                           gcgcATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGAc                                                                                               <  2:193533/140‑1 (MQ=255)

                                           acgcATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATT‑GTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACg                                                                                              <  2:59266/139‑1 (MQ=255)

                                              cATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGa                                                                                            <  2:1115833/140‑1 (MQ=255)

                                              cATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGa                                                                                            <  1:170900/140‑1 (MQ=255)

                                                    aaaaaaaaCATAGCAAAAAATAGCGGGGGGGGTGGTCGGCGAGAATAAATGTCGGCATCCCTCACGAAATGCCGGACAATTTACTGGTTTTATTGGTTGA‑CCAGGGCGTTAGCGATTCTCG‑ATGGAC‑TGAGGGAGCGtcc                                                                                      <  2:207314/135‑3 (MQ=255)

                                                      aaTAAACATAGCACAAAATAACGGGGGCGGTGGTCTGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTAccc                                                                                    >  1:896477/1‑140 (MQ=255)

                                                      aaTAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTAccc                                                                                    >  1:1373159/1‑140 (MQ=255)

                                                        tAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACccgc                                                                                  >  1:1497272/1‑140 (MQ=255)

                                                        tAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAACATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACccgc                                                                                  >  1:1623080/1‑140 (MQ=255)

                                                         aaaCATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACccgcc                                                                                 >  1:2276723/1‑140 (MQ=255)

                                                          aaCATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACccgccg                                                                                >  1:2198736/1‑140 (MQ=255)

                                                           aCATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGt                                                                               >  1:1029673/1‑140 (MQ=255)

                                                           aCATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGt                                                                               >  1:520693/1‑140 (MQ=255)

                                                           aCATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGt                                                                               >  1:830581/1‑140 (MQ=255)

                                                             aTAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTgg                                                                             >  1:1325786/1‑140 (MQ=255)

                                                             aTAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑CGACGTAGCGTACCCGCCGTgc                                                                             >  1:2109666/1‑139 (MQ=255)

                                                             aTAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGATTATTGGTTGA‑TCAAGGCGTTAGCGTTTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTgg                                                                             >  2:4217/1‑140 (MQ=255)

                                                              tAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGc                                                                            >  2:789599/1‑140 (MQ=255)

                                                              aaGCAAAAAAAAAGGGGGGGGGTGGTGGGCGAGCATAATTGTCGGAATTCCCCACAAAATGCCGGACAATTTACTGGTTTTATTGTTTGA‑TCAGGGCGTTGGGGATTCTCG‑ATGGAC‑TGACGGAGCGTCCCCGCCGTGGc                                                                            <  2:1091836/139‑1 (MQ=255)

                                                                gCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCAt                                                                          >  2:435437/1‑140 (MQ=255)

                                                                gCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCAt                                                                          >  1:947265/1‑140 (MQ=255)

                                                                gCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCAt                                                                          >  1:1967051/1‑140 (MQ=255)

                                                                  acaAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGa                                                                        >  2:239406/1‑140 (MQ=255)

                                                                  acaAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGAGATTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGa                                                                        >  1:2184917/1‑140 (MQ=255)

                                                                  aaaaaaTAAGGGGGGCGGTGGTCGGCGAGAAAAATTGTCGGAATCCCCCACGAAATGCGGGACATTTTACTGGGTTTATTGGTTAA‑TAAAGGCGTTGGCATTTCTCG‑ATGGAC‑TGACGGAGCGTCCCCGCCGTGGCATGa                                                                        <  2:676240/138‑1 (MQ=255)

                                                                      aaTAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGc                                                                    >  1:378605/1‑140 (MQ=255)

                                                                       ataggggggggggTGGTGGGGGAGAATAAATGTCGGCTTCCCTCACGAAATGCGGGACATTTTACTGGTTTTATTGGTTGA‑TCAAGGCGTTGGCGATTCTCG‑AGGGAC‑TGAGGGAGCGTCCCCGCCGTGGCATGAACGCt                                                                   <  2:702910/135‑1 (MQ=255)

                                                                       ataagtggggggGTGGTCGGCGAGAAAAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGTTTTTTGGGTTGA‑CCAGGGCGTTAGCGTTTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCt                                                                   <  2:1474496/134‑1 (MQ=255)

                                                                       aaaagggggggggggGTGGGTGAAAAAAAATGTCGTCATTCCACACAAAATGCCGGACAATTTACGGGGTTTATTGGTAAA‑AAAGGGCGATAGCAATTCTCG‑AGGGAC‑GGACGGTGCGTACCCGCCGTGGCATGAACGCt                                                                   <  2:2231136/135‑1 (MQ=255)

                                                                           cGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCg                                                               >  2:2102848/1‑140 (MQ=255)

                                                                            ggggggggTGGTCGGCGAGAATAAATGTCGGCATCCCTCACGAAATGCCGAACATTTTACTGGTTTTTTTGGTTGA‑TCAAGGCTTTAGCGTTTCTGG‑ATGGAC‑TGACGGGGCGTACCCGCCGTGGCATGAACGCTACCGc                                                              <  2:1737570/140‑1 (MQ=255)

                                                                            gggggAGGGGGTCGGCAAGAATAAGTGTCGGCTTCCCTAAGAAAATGCCGGACATTTTACTGGTTTTATTGTTTGA‑TCAAGGTGTAAGCGTTTCTCG‑AGGGAC‑TGAGGGGGCGTCCCCGCCGTGGCATGAACGCTACCGc                                                              <  2:1967051/140‑1 (MQ=255)

                                                                                gCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTaa                                                          >  2:2039697/1‑140 (MQ=255)

                                                                                gCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTaa                                                          >  1:1370762/1‑140 (MQ=255)

                                                                                gCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTaa                                                          >  1:1012771/1‑140 (MQ=255)

                                                                                 cGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAg                                                         >  1:471314/1‑140 (MQ=255)

                                                                                 cGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAg                                                         >  1:1968898/1‑140 (MQ=255)

                                                                                         ggCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGcac                                                 >  1:433180/1‑140 (MQ=255)

                                                                                          gCGAGAAAAAATGTCGGCATCCCTCACGAAATGCCGAACATTTTACTGGTTTTTTTGGTTAA‑TAAGGGCGTTGGCGTTTCTCG‑ATGGAC‑TGAGGGGGCGTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGcaca                                                <  2:1145561/140‑1 (MQ=255)

                                                                                                 aaaaTGTGGGAATCCCTGACAAAATGCCGGAAATTTTCCTGGGTTT‑TTGGTTTA‑AAAAGGGTATTGCGGTTTCCGAATGATC‑AGCGGGAGCCCACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGa                                         <  2:201395/139‑1 (MQ=255)

                                                                                                 aaaaTGTCGGCATTCCTCACGAAATGCCGAACATTTTACTGGTTTTATTGGTTAA‑ACAGGGCGTAAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGa                                         <  2:1909548/139‑1 (MQ=255)

                                                                                                 aaaaTGTCGACATCCCGCAGAAAATGCCGAATATTTTACTGGTTTTTTTGTTAGT‑ACAGGGTGTTAGGCTTTCTCG‑AGGCCC‑GGCCGGGGCCTGCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGa                                         <  2:1369108/139‑1 (MQ=255)

                                                                                                       tCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGGGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGAccc                                   >  1:1780988/1‑140 (MQ=255)

                                                                                                       tCGGCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGAccc                                   >  2:101216/1‑140 (MQ=255)

                                                                                                         ggCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCaa                                 >  1:1737430/1‑140 (MQ=255)

                                                                                                         ggCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCaa                                 >  2:1089159/1‑140 (MQ=255)

                                                                                                         ggCATTCCTCACGAAATGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCaa                                 >  2:1012511/1‑140 (MQ=255)

                                                                                                                 acACGAAATGCGGGAAATTTTACTGGTTTTTTTGGTTGA‑ACAGGGGGTTAGCGTTTCTCG‑ATGGAC‑TGACGGAGCGACCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGcc                         <  2:341335/139‑1 (MQ=255)

                                                                                                                       aaTGCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCtt                   >  2:38079/1‑139 (MQ=255)

                                                                                                                        aTGCGGGAAATTTAACTGGTTTTATTGTTTAA‑TCAGGGTGTTGGCGATTCTCA‑ATGGAC‑AGAGGGACCGTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGa                  <  2:1623080/140‑1 (MQ=255)

                                                                                                                          gccaaaaaaTTTACGGGGTTT‑TTGGTTAATTAAAGGCGTTA‑AGATTTTTG‑GTTGACGTGACGCCGCTTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAAt                <  2:2184917/133‑1 (MQ=255)

                                                                                                                          gCCGGACAATTTACTGGGTTTATTGGTTGA‑TCAAGGAGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAAt                >  2:1476356/1‑140 (MQ=255)

                                                                                                                             gaaaaaTTTAGTGGTTTTATTGGTTGA‑TCAGGGCTTTAGCGATTCTCG‑ATGGAC‑TGAGGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCAt             <  2:2156833/136‑1 (MQ=255)

                                                                                                                             aaaCAATTTTTTGGTTTTTTTGGATAA‑TCAGGGCATTACGGATTCTCG‑ATGCAC‑TGACGGTTCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCAt             <  2:1936825/138‑1 (MQ=255)

                                                                                                                               aaattttATGGGTTTTATTGGTTGA‑TCAGGGCGTTAGCGTTTCTGG‑ATGGAC‑GGGCGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTa           <  2:520693/136‑1 (MQ=255)

AGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGA‑TCAAGGCGTTAGCGATTCTCG‑ATGGAC‑TGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCAT  >  NC_000913/903792‑904067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A