Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F48 I1 R1	115	87.5	3003888	99.1%	2976853	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	903,996	G→T	H158N (CAT→AAT)	ybjP ←	DUF3828 domain‑containing lipoprotein YbjP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	903,996	0	G	T	100.0%	289.8 / NA	81	H158N (CAT→AAT)	ybjP	DUF3828 domain‑containing lipoprotein YbjP
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (37/44); total (37/44)

AATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCA  >  NC_000913/903862‑904126

aaTAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGc                                                                                                                               >  2:1002980/1‑140 (MQ=255)

 aaaggggggggggTGTTGGGGGAGAATAATTGTCGGCATTCCTCACAAAATGCCGAACATTTTACGGGT‑TTATTTGTTTAAACAGGGCGTTAGCGATTCTCGA‑T‑GTACTGAGGGGGCGTCCCCGCCGTGGCATTAACGCt                                                                                                                              <  2:1188728/135‑1 (MQ=255)

     cGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCg                                                                                                                          >  1:740859/1‑140 (MQ=255)

     cGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCg                                                                                                                          >  1:1297787/1‑140 (MQ=255)

     cGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCg                                                                                                                          >  1:1316229/1‑140 (MQ=255)

         ggCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCTCCTa                                                                                                                      >  1:1456504/1‑140 (MQ=255)

          gCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTaa                                                                                                                     >  1:1159714/1‑140 (MQ=255)

          gCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTaa                                                                                                                     >  2:887578/1‑140 (MQ=255)

          gCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTaa                                                                                                                     >  2:1253038/1‑140 (MQ=255)

           cGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTaat                                                                                                                    >  2:624039/1‑139 (MQ=255)

                gtgggCGAACATAAATGTCGGCATCCCGCACAAAATGCCGCATATTTTGGGGGT‑TTTTTTGGTGGATCAGGGTTTTAGCCTTTCTCGG‑T‑GGACTGACGGGGCGAACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACg                                                                                                               <  2:219475/137‑1 (MQ=255)

                gtCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACg                                                                                                               >  1:1391525/1‑140 (MQ=255)

                    gCGAACATAATTGTCGCCATCCCTCACAAAAGGCCGGAAATTTTAGGGGT‑TTTTTTGGTTGATAAGGGGGTTGGCGTTTCTCGA‑T‑GGACTGCGGGGGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGcaca                                                                                                           <  2:1391525/140‑1 (MQ=255)

                           aaaagggcGGAATTCCTCACGAAATGCCGGAAAATTTAGGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGT‑T‑GGACTGGCGGAGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGa                                                                                                    <  2:1461926/133‑1 (MQ=255)

                           aaaaTGTCGGCATTCCTCACGAAATGCGGGACAATTTACGGGG‑TTTTTGGGTTGATCAGGCGGTTAGCTATTCCGGA‑G‑GGACGGGCGGGGCGACCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGa                                                                                                    <  2:1246213/139‑1 (MQ=255)

                           aaaaTGTCGGAATCCCTCAC‑AAAGGGCGAAAAATTTTGGGGGTTTTATTGGTTGA‑GAAGGGGTTA‑AGAATTTCGAGTAGAACGGCGGGAGCTTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGa                                                                                                    <  2:1126077/139‑1 (MQ=255)

                                ttCGGCATCCCACACAAAGTGCGGAACATTTCACGGGG‑TTTATTGTTTAACCAGGGCGTGGGGATTTCCAGA‑T‑GGACGGCCGCGGCACCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGAcc                                                                                               <  2:1297787/139‑1 (MQ=255)

                                gtgggCATCCCTCACGAAATGCGGAACAATTTGGGGGT‑TTTATTGTTTAACCAGGGCGTTAGCGTTTCTCGA‑T‑GGACTGCGGGAGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGAcc                                                                                               <  2:768879/137‑1 (MQ=255)

                                ggcgactttCCTCACAAAATGCGGGACATTTTGGGGGT‑TTTTTGGGTTGACAAGGGCGTTAGCCATCCTGGA‑T‑GGAGTGGGGGGGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGAcc                                                                                               <  2:794984/133‑1 (MQ=255)

                                gTCGGCATTCCCCACAAAATGCGGAACATTTTAGGGGT‑TTTTTTGGTTGATAAAGGCTTTAGCGATTCTCGA‑T‑GGACGGAGGGAGCGAACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGAcc                                                                                               <  2:740859/140‑1 (MQ=255)

                                gTCGGCATTCCCCACAAAATGCCGGAAAATTTAGGGGT‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGAGGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGAcc                                                                                               <  2:1078469/140‑1 (MQ=255)

                                gTCGGCATCCCCCAAGAAATGCGGGAAATTTTGGGGGT‑TTTATTGGTTGATCAGGGCTTGAGCTATTCCCGA‑T‑GGCCGGACGGAGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGAcc                                                                                               <  2:374972/140‑1 (MQ=255)

                                  cGGCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCa                                                                                             >  2:271365/1‑140 (MQ=255)

                                   ggCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCaa                                                                                            >  2:241233/1‑140 (MQ=255)

                                   ggCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCaa                                                                                            >  1:718073/1‑140 (MQ=255)

                                   ggCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCaa                                                                                            >  1:674927/1‑140 (MQ=255)

                                     aatcccTCAGGAAATG‑CGGAAAATTTTGGGGGTTTTATTGGTTGATCAGGGCGTTGGCATTTCTCGA‑G‑GGACTGAGGGGGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAaca                                                                                          <  2:1216262/136‑1 (MQ=255)

                                          atCACGAAAGGCCGGACATTTTGGGGGT‑TTTATTGGTTAATCAGGGCGTTAGCGTTTCTCGA‑T‑GGACGGAGGGAGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGc                                                                                     <  2:774158/139‑1 (MQ=255)

                                             aCGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCtt                                                                                  >  1:209503/1‑140 (MQ=255)

                                                   agCCGGAAATTTTAGGGGG‑TTTATTGGTTGATCAAGGCTTAAACGATTCTCGA‑T‑GAACTGACGGACGGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGaa                                                                            <  2:249069/139‑1 (MQ=255)

                                                    gCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTTGCCTTCCTGAAt                                                                           >  1:1114586/1‑140 (MQ=255)

                                                    gCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAAt                                                                           >  2:223095/1‑140 (MQ=255)

                                                       ggaaattttAGGGGT‑TTTATGGTTTAATCAGGGCTTTAGCGTTTCTCGA‑T‑GGACGGACGGAGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCAt                                                                        <  2:718073/134‑1 (MQ=255)

                                                       gaaCAATTTAGGGGG‑TTTATTGGTTAATCAAGGCGTTAGCGATTCTCGA‑T‑GAACTGACGGAGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCAt                                                                        <  2:674927/138‑1 (MQ=255)

                                                        aagaaTTTACGGGT‑TTTCTTGTTTGACCGCGGGGTAAGGTATTCAGGA‑G‑GGAGTGACGGGGCTTCCCCGCCGTGGCATTAGCGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCAtt                                                                       <  2:1148079/137‑1 (MQ=255)

                                                             tttACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAacac                                                                  >  1:714650/1‑140 (MQ=255)

                                                                        ttATTGGTTAATCAAGGCTTTAGCGTTTCTCGA‑T‑GGACTGACGGAGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGc                                                        <  2:186253/140‑1 (MQ=255)

                                                                            tGGTAGATAAGGGGGTTGCCGATTCCGGA‑G‑GGCCTGACGGAGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAAc                                                    <  2:581494/140‑1 (MQ=255)

                                                                             ggTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAAcc                                                   <  1:1421925/140‑1 (MQ=255)

                                                                                tGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTg                                                >  2:809904/1‑140 (MQ=255)

                                                                                 gATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTgt                                               >  2:85011/1‑139 (MQ=255)

                                                                                 gATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTgt                                               >  2:1279984/1‑139 (MQ=255)

                                                                                 gATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTgg                                               >  2:1024272/1‑140 (MQ=255)

                                                                                  ataaaGGCGTTAGCGTTTCTCGA‑T‑GGACTGACGGAGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGt                                              <  2:880461/137‑1 (MQ=255)

                                                                                     aagtagTTAGCAATTCGGGA‑T‑GGAACGACGGATCCACCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCAc                                           <  2:1316229/135‑1 (MQ=255)

                                                                                      gggCGTTAGCGATCATCAG‑T‑GGCCGGCGGGAGCTCCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCAcc                                          <  1:248062/139‑1 (MQ=255)

                                                                                      ggcggTTGGCGATTCACGA‑G‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCAcc                                          <  2:892559/136‑1 (MQ=255)

                                                                                      aGGCGTTAGCGTTTCTCGA‑T‑GGACTGACGGAGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCAcc                                          <  1:67579/140‑1 (MQ=255)

                                                                                      aGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGGGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCAcc                                          <  1:1279984/140‑1 (MQ=255)

                                                                                      aGGCGTTAGCAATTCTCGA‑T‑GGCCTGAGGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCAcc                                          <  1:156190/140‑1 (MQ=255)

                                                                                       ggtgTTGGCGATTCTCGA‑G‑GGACTGGCGGAGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCAccc                                         <  1:1253038/137‑1 (MQ=255)

                                                                                        gCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCt                                        >  2:522006/1‑140 (MQ=255)

                                                                                             aGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCAc                                           <  2:497364/132‑1 (MQ=255)

                                                                                             aGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCAc                                           >  1:497364/1‑132 (MQ=255)

                                                                                             aGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGtttt                                   >  2:92945/1‑139 (MQ=255)

                                                                                             aGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTg                                   >  2:1096610/1‑140 (MQ=255)

                                                                                                 aTTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGAt                               >  2:625426/1‑140 (MQ=255)

                                                                                                    acagA‑T‑GGACTGAGGGAGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCa                            <  2:825673/137‑1 (MQ=255)

                                                                                                     tcGA‑T‑GGACTGAGGGAGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCAc                           <  1:858994/140‑1 (MQ=255)

                                                                                                      caa‑T‑GGACTGCCGGAGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCAcg                          <  2:1368317/138‑1 (MQ=255)

                                                                                                        a‑T‑GGACTGAGGGGGCGTCCCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCAcgcg                        <  1:179033/140‑1 (MQ=255)

                                                                                                        a‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCAcgcg                        >  2:862467/1‑140 (MQ=255)

                                                                                                             gACTGACGGGGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCaa                     <  1:85291/140‑1 (MQ=255)

                                                                                                              aCTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAAt                    >  2:91792/1‑140 (MQ=255)

                                                                                                              aCTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAAt                    >  2:801590/1‑140 (MQ=255)

                                                                                                              aCTGACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAAt                    >  2:523442/1‑140 (MQ=255)

                                                                                                                 gACGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGa                 >  1:1438996/1‑140 (MQ=255)

                                                                                                                  aCGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGaa                <  2:1159714/140‑1 (MQ=255)

                                                                                                                   cGGAGCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAAt               <  1:522006/140‑1 (MQ=255)

                                                                                                                       gCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTa           >  2:1377250/1‑140 (MQ=255)

                                                                                                                       gCGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTa           >  2:391053/1‑140 (MQ=255)

                                                                                                                        cGTACCCGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTAc          >  2:1168250/1‑140 (MQ=255)

                                                                                                                            cccGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGc      >  2:1119886/1‑140 (MQ=255)

                                                                                                                            cccGCCGTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGc      >  2:204432/1‑140 (MQ=255)

                                                                                                                             ccgccgTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCa     <  1:809904/140‑1 (MQ=255)

                                                                                                                              cgccgTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCGCCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCAt    <  2:1448902/140‑1 (MQ=255)

                                                                                                                              cgccgTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCAt    <  2:798674/140‑1 (MQ=255)

                                                                                                                              cgccgTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCAt    <  1:164589/140‑1 (MQ=255)

                                                                                                                              cgccgTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCAt    <  1:1024272/140‑1 (MQ=255)

                                                                                                                                ccgTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCa  <  1:900721/140‑1 (MQ=255)

                                                                                                                                ccgTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCa  <  2:714650/140‑1 (MQ=255)

                                                                                                                                ccgTGGCATTAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCa  <  1:1002980/140‑1 (MQ=255)

AATAACGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGG‑TTTATTGGTTGATCAAGGCGTTAGCGATTCTCGA‑T‑GGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCA  >  NC_000913/903862‑904126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A