Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F48 I1 R1	115	87.5	3003888	99.1%	2976853	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	195,050	G→T	V50F (GTC→TTC)	ispU →	undecaprenyl diphosphate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	195,050	0	G	T	100.0%	386.8 / NA	108	V50F (GTC→TTC)	ispU	undecaprenyl diphosphate synthase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (46/62); total (46/62)

Only 100 of 110 total aligned reads displayed.

TACTCAACCACTTAGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCGTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATGGAACTGTTTGTGTGGGCGCT  >  NC_000913/194917‑195180

tACTCAACCACTTAGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTccgcc                                                                                                                              >  2:1382569/1‑140 (MQ=255)

tACTCAACCACTTAGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTccgcc                                                                                                                              >  2:641829/1‑140 (MQ=255)

tACTCAACCACTTAGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTccgcc                                                                                                                              >  2:346118/1‑140 (MQ=255)

  cTCAACCACTTAGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCgg                                                                                                                            >  1:459938/1‑140 (MQ=255)

  cTCAACCACTTAGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCgg                                                                                                                            >  1:152524/1‑140 (MQ=255)

  cTCAACCACTTAGCGAAAAATTGCAAGCGCATGGCTGCCGTCATGTTGGGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCATTTGGCATAAAGCCGGGGCAAAATCCTTCCGCCgg                                                                                                                            <  2:250933/140‑1 (MQ=255)

   tCAACCACTTAGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCggg                                                                                                                           >  2:387373/1‑140 (MQ=255)

    cAACCACTTAGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGc                                                                                                                          <  2:1469296/140‑1 (MQ=255)

       ccACTTAGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGt                                                                                                                       >  1:580387/1‑140 (MQ=255)

       ccACTTAGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGt                                                                                                                       >  1:536351/1‑140 (MQ=255)

       ccACTTAGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGt                                                                                                                       >  1:165326/1‑140 (MQ=255)

            tAGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCtt                                                                                                                  >  1:53015/1‑140 (MQ=255)

             aGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCttt                                                                                                                 >  1:868475/1‑140 (MQ=255)

             aGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCttt                                                                                                                 >  2:576504/1‑140 (MQ=255)

                 aaaaaTTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCg                                                                                                             <  1:1382569/140‑1 (MQ=255)

                 aaaaaTTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCg                                                                                                             <  2:459938/140‑1 (MQ=255)

                    aaTTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGcc                                                                                                          <  1:759085/140‑1 (MQ=255)

                    aaTTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGcc                                                                                                          <  2:201955/140‑1 (MQ=255)

                     aTTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGTGCAAAAAAGCAAGGGAAGATTCGTGTCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCTCCGGGCTGTCTCTTTTGCAGCca                                                                                                         >  2:43554/1‑140 (MQ=255)

                     aTTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCca                                                                                                         <  1:623640/140‑1 (MQ=255)

                      ttGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCcaa                                                                                                        <  2:130157/140‑1 (MQ=255)

                      ttGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCcaa                                                                                                        <  1:151108/140‑1 (MQ=255)

                      ttGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCcaa                                                                                                        <  1:1139275/140‑1 (MQ=255)

                      ttGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCcaa                                                                                                        <  1:1419335/140‑1 (MQ=255)

                      ttGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCcaa                                                                                                        <  2:92071/140‑1 (MQ=255)

                      ttGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCcaa                                                                                                        <  2:422631/140‑1 (MQ=255)

                        gCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCcaaca                                                                                                      <  1:346118/140‑1 (MQ=255)

                        gCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCcaaca                                                                                                      >  2:1461034/1‑140 (MQ=255)

                        gCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCcaaca                                                                                                      <  2:217514/140‑1 (MQ=255)

                         ccAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCcaacaa                                                                                                     >  1:1079815/1‑140 (MQ=255)

                         ccAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCcaacaa                                                                                                     <  1:1247509/140‑1 (MQ=255)

                           aGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACg                                                                                                   <  1:181309/140‑1 (MQ=255)

                                  ggCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGa                                                                                            <  2:726736/140‑1 (MQ=255)

                                   gCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAg                                                                                           <  1:576504/140‑1 (MQ=255)

                                      gCCGTCATGTTGCG‑‑‑ATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTa                                                                                     <  1:145871/140‑1 (MQ=255)

                                          tCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTaa                                                                                    <  1:276089/140‑1 (MQ=255)

                                            aTGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACg                                                                                  <  1:495575/140‑1 (MQ=255)

                                            aTGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACg                                                                                  <  1:127965/140‑1 (MQ=255)

                                             tGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACgt                                                                                 >  2:1210923/1‑139 (MQ=255)

                                              gTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCt                                                                                <  2:114262/140‑1 (MQ=255)

                                              gTTGCGAGCAGTATGGAGGGCGATGGCCGCTGGGGGAAAAAGCAAGGGAAGAGTCGGGCGGTTAGGGAGAATGTCGTGACAAAATCTTACCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCt                                                                                >  2:1410525/1‑140 (MQ=255)

                                                tGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGt                                                                              <  1:1068517/140‑1 (MQ=255)

                                                tGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGt                                                                              <  2:1233749/140‑1 (MQ=255)

                                                tGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGt                                                                              <  2:1229423/140‑1 (MQ=255)

                                                tGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGt                                                                              <  1:387373/140‑1 (MQ=255)

                                                  cGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGTAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTAt                                                                            <  2:35017/140‑1 (MQ=255)

                                                  cGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTAt                                                                            <  1:641829/140‑1 (MQ=255)

                                                    aTCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGc                                                                          >  1:104243/1‑140 (MQ=255)

                                                    aTCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGc                                                                          >  2:142082/1‑140 (MQ=255)

                                                       aTTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCtt                                                                       <  1:1083594/140‑1 (MQ=255)

                                                         tATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTta                                                                     >  1:1316322/1‑140 (MQ=255)

                                                         tATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTta                                                                     >  2:1045266/1‑140 (MQ=255)

                                                          aTGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTtag                                                                    <  2:300181/140‑1 (MQ=255)

                                                           tGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTtagt                                                                   >  1:28203/1‑140 (MQ=255)

                                                           tGGACGGCAATGGCCACTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTtagt                                                                   <  2:373278/140‑1 (MQ=255)

                                                               cGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTg                                                               >  1:687973/1‑140 (MQ=255)

                                                                ggCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGa                                                              >  2:1319995/1‑140 (MQ=255)

                                                                 gCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGaa                                                             >  1:774048/1‑140 (MQ=255)

                                                                 gCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGaa                                                             >  2:1474865/1‑140 (MQ=255)

                                                                 gCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGaa                                                             >  1:194208/1‑140 (MQ=255)

                                                                 gCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGaa                                                             >  2:1262318/1‑140 (MQ=255)

                                                                 gCAATGGCCGATGGGAAAAAAAGCAAGGAAAGATTCGTGCCTTTGGGCATAAAGACGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGaa                                                             <  2:1165554/140‑1 (MQ=255)

                                                                  cAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGaaa                                                            >  2:35839/1‑140 (MQ=255)

                                                                  cAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGaaa                                                            >  2:1454302/1‑140 (MQ=255)

                                                                   aaTGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGaaaa                                                           >  1:715994/1‑140 (MQ=255)

                                                                   aaTGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGaaaa                                                           >  1:1170185/1‑140 (MQ=255)

                                                                   aaTGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGaaaa                                                           >  1:858431/1‑140 (MQ=255)

                                                                    aTGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAAc                                                          <  2:165326/140‑1 (MQ=255)

                                                                    aTGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAAc                                                          <  2:28203/140‑1 (MQ=255)

                                                                    aTGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAAc                                                          <  1:1119084/140‑1 (MQ=255)

                                                                    aTGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAAc                                                          <  2:194208/140‑1 (MQ=255)

                                                                    aTGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAAc                                                          <  2:152524/140‑1 (MQ=255)

                                                                       gCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTgg                                                       >  2:13581/1‑140 (MQ=255)

                                                                            tGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCg                                                  >  1:1164490/1‑140 (MQ=255)

                                                                              ggCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGAc                                                <  1:1243772/140‑1 (MQ=255)

                                                                               gCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGAcc                                               <  2:783287/140‑1 (MQ=255)

                                                                                cAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCa                                              >  1:1488538/1‑140 (MQ=255)

                                                                                   aaaaGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAgcg                                           <  1:1125653/140‑1 (MQ=255)

                                                                                   aaaaGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAgcg                                           <  2:868475/140‑1 (MQ=255)

                                                                                              aaGATTCGTGCCTTTGGGCATACAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAg                                <  1:1258841/140‑1 (MQ=255)

                                                                                              aaGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAg                                <  1:525646/140‑1 (MQ=255)

                                                                                              aaGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAg                                <  1:1262318/140‑1 (MQ=255)

                                                                                              aaGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAg                                <  2:1170185/140‑1 (MQ=255)

                                                                                                gATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGta                              >  2:279683/1‑139 (MQ=255)

                                                                                                 aTTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGc                             <  2:1164490/140‑1 (MQ=255)

                                                                                                   tCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGt                           <  1:1045266/140‑1 (MQ=255)

                                                                                                      tGCCTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTaa                        >  1:684673/1‑140 (MQ=255)

                                                                                                         cTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATgg                     <  2:687973/140‑1 (MQ=255)

                                                                                                         cTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATgg                     <  2:344658/140‑1 (MQ=255)

                                                                                                         cTTTGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATgg                     <  2:774048/140‑1 (MQ=255)

                                                                                                           ttGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATGGaa                   <  1:1454302/140‑1 (MQ=255)

                                                                                                           ttGGGCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATGGaa                   <  2:580387/140‑1 (MQ=255)

                                                                                                             gggCATAAAGCCGGGACAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATGGAACt                 >  2:866639/1‑140 (MQ=255)

                                                                                                              ggCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATGGAACTg                >  2:209833/1‑140 (MQ=255)

                                                                                                               gCATAAAGCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATGGAACTGt               <  2:325832/140‑1 (MQ=255)

                                                                                                                      gCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATGGaa                   >  1:252695/1‑129 (MQ=255)

                                                                                                                      gCCGGGGCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATGGaa                   <  2:252695/129‑1 (MQ=255)

                                                                                                                          gggCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATGGAACTGTTTGTGTGGgcg    >  1:411785/1‑140 (MQ=255)

                                                                                                                           ggCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATGGAACTGTTTGTGTGGgcgc   >  2:1398518/1‑140 (MQ=255)

                                                                                                                            gCAAAATCCTTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATGGAACTGTTTGTGTGGGCGCt  <  1:323976/140‑1 (MQ=255)

TACTCAACCACTTAGCGAAAAATTGCCAGCGCATGGCTGCCGTCATGTTGCGATCATTATGGACGGCAATGGCCGCTGGGCAAAAAAGCAAGGGAAGATTCGTGCCTTTGGGCATAAAGCCGGGGCAAAATCCGTCCGCCGGGCTGTCTCTTTTGCGGCCAACAACGGTATTGAGGCGTTAACGCTGTATGCCTTTAGTAGTGAAAACTGGAACCGACCAGCGCAGGAAGTCAGTGCGTTAATGGAACTGTTTGTGTGGGCGCT  >  NC_000913/194917‑195180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A