Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F48 I1 R1
|
115 |
87.5 |
3003888 |
99.1% |
2976853 |
139.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
282,103 |
C→T |
intergenic (‑120/‑175) |
yagA ← / → yagE |
CP4‑6 prophage; integrase core domain‑containing protein YagA/CP4‑6 prophage; putative 2‑keto‑3‑deoxygluconate aldolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 282,103 | 0 | C | T | 100.0%
| 636.0
/ NA
| 176 | intergenic (‑120/‑175) | yagA/yagE | CP4‑6 prophage; integrase core domain‑containing protein YagA/CP4‑6 prophage; putative 2‑keto‑3‑deoxygluconate aldolase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (82/94); total (82/94) |
Only 100 of 178 total aligned reads displayed.
GGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTT > NC_000913/281967‑282239
|
ggCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCg < 2:1307340/140‑1 (MQ=255)
cATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGcc < 1:463520/140‑1 (MQ=255)
cATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGcc < 2:487692/140‑1 (MQ=255)
aaGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCt > 1:678030/1‑140 (MQ=255)
aaGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCt > 1:1092552/1‑140 (MQ=255)
aCTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTggg > 2:1023989/1‑140 (MQ=255)
aCTCCATAAACGGGTTCTTATGCCTTAGTTGTAAG‑GTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTgggg > 2:1427044/1‑140 (MQ=255)
aCTCCATAAACGGGATCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTggg > 1:977679/1‑140 (MQ=255)
tCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGga < 2:1500013/140‑1 (MQ=255)
tCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGga < 2:215166/140‑1 (MQ=255)
tCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGga > 1:1194490/1‑140 (MQ=255)
tAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAgg > 1:185007/1‑140 (MQ=255)
ttCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGt > 2:1398564/1‑140 (MQ=255)
ttCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGt > 2:1305040/1‑140 (MQ=255)
ttCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGt > 1:187718/1‑140 (MQ=255)
tCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTg < 2:435581/140‑1 (MQ=255)
tCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTg < 1:1398564/140‑1 (MQ=255)
cTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGa < 1:549809/140‑1 (MQ=255)
aTGCCTTAGTTGTAAG‑GTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAgggg < 1:1427044/140‑1 (MQ=255)
tGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAgggg < 1:1026281/140‑1 (MQ=255)
gCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGc < 1:946575/140‑1 (MQ=255)
ccTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCa < 2:940190/140‑1 (MQ=255)
ccTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCa < 2:868889/140‑1 (MQ=255)
tAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAgggg > 2:265666/1‑135 (MQ=255)
aGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACA‑CCCAAAAGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATAtg > 1:920775/1‑140 (MQ=255)
gTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATAtg > 1:1214072/1‑140 (MQ=255)
gTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGATGAGGGGCAATAtg < 2:445831/140‑1 (MQ=255)
aGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATcc > 2:954595/1‑140 (MQ=255)
tCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAgggg > 2:187135/1‑123 (MQ=255)
tCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCt > 1:833937/1‑140 (MQ=255)
tCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCt > 2:1165944/1‑140 (MQ=255)
cTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCtt > 1:7998/1‑140 (MQ=255)
cTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCtt > 1:758006/1‑140 (MQ=255)
cTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGCACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCtt > 1:1252522/1‑140 (MQ=255)
gTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTc > 1:642765/1‑140 (MQ=255)
gTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTc > 2:1404378/1‑140 (MQ=255)
ccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGc < 2:1043164/140‑1 (MQ=255)
cGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCa < 1:1168844/140‑1 (MQ=255)
cGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCa < 2:702701/140‑1 (MQ=255)
cGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCa < 2:551879/140‑1 (MQ=255)
aGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCct > 2:1210981/1‑140 (MQ=255)
gtgtTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCctc < 2:1030920/140‑1 (MQ=255)
cACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGAGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTcttccc > 2:324413/1‑140 (MQ=255)
tATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTcttcccttc < 2:678030/140‑1 (MQ=255)
tGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCg > 2:381888/1‑140 (MQ=255)
ggACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTAcc < 2:1368173/140‑1 (MQ=255)
ggACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTAcc < 2:1268445/140‑1 (MQ=255)
gACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACct > 2:739022/1‑140 (MQ=255)
aCCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACctc < 1:1170960/140‑1 (MQ=255)
ccGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACctct > 2:575203/1‑140 (MQ=255)
ccGCACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACctct > 2:559158/1‑140 (MQ=255)
gTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTcc > 2:114710/1‑140 (MQ=255)
gTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTcc < 2:187718/140‑1 (MQ=255)
tACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCTGCACTCCCTCTTCCCTTCCGATTTACCTCTCCt > 2:876202/1‑140 (MQ=255)
tACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCt > 1:779323/1‑140 (MQ=255)
tACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCt > 2:1382527/1‑140 (MQ=255)
tACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAAGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTACCCTTCCGATTTACCTCTCCt < 1:233324/140‑1 (MQ=255)
ccccAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGtt < 2:758006/140‑1 (MQ=255)
ccccAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGtt < 1:711713/140‑1 (MQ=255)
ccAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCt < 1:1404378/140‑1 (MQ=255)
ccAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCt < 1:1369418/140‑1 (MQ=255)
ccAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCt < 1:632444/140‑1 (MQ=255)
aaaGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGc > 1:1059335/1‑140 (MQ=255)
aaGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCg < 2:185007/140‑1 (MQ=255)
aaGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCg < 1:575203/140‑1 (MQ=255)
aGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGt < 1:1348170/140‑1 (MQ=255)
aGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGt < 2:47945/140‑1 (MQ=255)
aGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGt < 1:194956/140‑1 (MQ=255)
aGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGt < 1:1151300/140‑1 (MQ=255)
aGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGt < 1:553107/140‑1 (MQ=255)
aGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGt < 2:1170800/140‑1 (MQ=255)
aGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGt < 1:381888/140‑1 (MQ=255)
aGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGt < 2:1092552/140‑1 (MQ=255)
gggAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCa < 2:137242/140‑1 (MQ=255)
gggAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCa < 1:1001208/140‑1 (MQ=255)
agagGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAg > 1:271408/1‑140 (MQ=255)
agagGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAg > 1:1365541/1‑140 (MQ=255)
agagGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAg > 1:1223359/1‑140 (MQ=255)
agagGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAg > 2:277586/1‑140 (MQ=255)
gagGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGt > 1:509729/1‑140 (MQ=255)
agGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTa > 1:373449/1‑140 (MQ=255)
aCTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTa < 1:1475041/135‑1 (MQ=255)
aCTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTa > 2:1475041/1‑135 (MQ=255)
aCTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATc > 1:847151/1‑140 (MQ=255)
cACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCa > 2:1363279/1‑126 (MQ=255)
cGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTtaaat > 2:339585/1‑140 (MQ=255)
aGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTtaaataa > 2:332642/1‑140 (MQ=255)
aTCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCT‑TCCTTGTTCTGCGTCATAGTATGATCGTTAAATAaacgaa < 2:7998/140‑1 (MQ=255)
tCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAaacgaa < 1:332642/140‑1 (MQ=255)
tCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAaacgaa < 2:833937/140‑1 (MQ=255)
tCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAaacgaa < 2:1223359/140‑1 (MQ=255)
tCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAaacgaa < 1:114710/140‑1 (MQ=255)
tCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAaacgaa < 1:943444/140‑1 (MQ=255)
cTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGAT‑CAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAaacgaacg < 2:973519/140‑1 (MQ=255)
ttttCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCTCTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAaacgaacg < 1:156595/140‑1 (MQ=255)
ttttCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAaacgaacg < 2:1439419/140‑1 (MQ=255)
ttttCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAaacgaacg < 1:339585/140‑1 (MQ=255)
ttttCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAaacgaacg < 1:957088/140‑1 (MQ=255)
tCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTg < 1:1433329/140‑1 (MQ=255)
tCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTg < 2:847151/140‑1 (MQ=255)
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GGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTT > NC_000913/281967‑282239
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
