Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F48 I1 R1	115	87.5	3003888	99.1%	2976853	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	317,190	C→G	intergenic (‑54/+536)	ykgA ← / ← rclC	putative DNA‑binding transcriptional regulator YkgA/reactive chlorine species resistance protein C

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	317,190	0	C	G	97.7%	338.5 / ‑1.3	87	intergenic (‑54/+536)	ykgA/rclC	putative DNA‑binding transcriptional regulator YkgA/reactive chlorine species resistance protein C
Reads supporting (aligned to +/- strand): ref base C (1/1); new base G (45/40); total (46/41)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

GCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAATCCACATA  >  NC_000913/317054‑317324

gCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTa                                                                                                                                     <  1:245616/140‑1 (MQ=255)

 cGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCATGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTaa                                                                                                                                    <  1:1437091/140‑1 (MQ=255)

 cGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTaa                                                                                                                                    <  1:316001/140‑1 (MQ=255)

 cGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTaa                                                                                                                                    <  1:1299946/140‑1 (MQ=255)

 cGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTaa                                                                                                                                    <  2:394133/140‑1 (MQ=255)

 agATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTaa                                                                                                                                    <  2:21960/139‑1 (MQ=255)

   atatCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAgt                                                                                                                                  <  2:1188127/140‑1 (MQ=255)

    tatCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAgtg                                                                                                                                 >  1:376455/1‑140 (MQ=255)

              tGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAAt                                                                                                                       >  2:1170492/1‑140 (MQ=255)

                aaaTAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAg                                                                                                                     >  1:148971/1‑140 (MQ=255)

                      ggTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAggg                                                                                                               >  1:1364737/1‑140 (MQ=255)

                        tGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCg                                                                                                             <  1:365374/140‑1 (MQ=255)

                        tGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCg                                                                                                             <  1:810785/140‑1 (MQ=255)

                          cTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGaa                                                                                                           >  1:503390/1‑140 (MQ=255)

                          cTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGaa                                                                                                           >  2:1443187/1‑140 (MQ=255)

                          cTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGaa                                                                                                           >  2:13355/1‑140 (MQ=255)

                                    cACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCTTCTCATTCTCCGTTAATTCTTTTCAATTTCGCCCATTTTCGTTTTACCCTGGCCCTTAAGTGTATCAAAATTACCAAGGGCAAAGGAAAAAGcc                                                                                                 >  2:1349121/1‑139 (MQ=255)

                                              aCTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGt                                                                                       <  1:211261/140‑1 (MQ=255)

                                                tCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCt                                                                                     <  2:1265116/140‑1 (MQ=255)

                                                 ccAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTg                                                                                    >  2:453355/1‑140 (MQ=255)

                                                   aGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGTGAAGGCAAAAGCACTGGTAGCGTCTGCt                                                                                  >  2:1406479/1‑140 (MQ=255)

                                                       gctgctGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGt                                                                              >  2:1462923/1‑140 (MQ=255)

                                                         tgctgTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGttt                                                                            >  2:28970/1‑139 (MQ=255)

                                                         tgctgTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGttt                                                                            >  2:441207/1‑139 (MQ=255)

                                                         tgctgTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTg                                                                            <  2:714416/140‑1 (MQ=255)

                                                          gctgTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGt                                                                           >  2:1042965/1‑140 (MQ=255)

                                                          gctgTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGt                                                                           >  1:487651/1‑140 (MQ=255)

                                                          gctgTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGt                                                                           >  1:371328/1‑140 (MQ=255)

                                                          gctgTAGAAGCTCCTGCCGGGTCAACTCATTCCCCGGTAAATCTCTGGCATATCGCAGAGTTTCGTGATACTCAGGGCGCTAAGTGTAGCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGt                                                                           >  2:1409787/1‑140 (MQ=255)

                                                             gTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTccc                                                                        <  1:1170492/140‑1 (MQ=255)

                                                              tAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTcccc                                                                       <  2:1198057/140‑1 (MQ=255)

                                                                gAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGa                                                                     >  2:246785/1‑140 (MQ=255)

                                                                     ttctGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATa                                                                >  1:866609/1‑140 (MQ=255)

                                                                      tctGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATag                                                               <  1:1349121/140‑1 (MQ=255)

                                                                        tGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATagag                                                             >  2:1246919/1‑140 (MQ=255)

                                                                        tGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATagag                                                             >  2:327703/1‑140 (MQ=255)

                                                                         gCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATagaga                                                            <  1:1384858/140‑1 (MQ=255)

                                                                          ccTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATagagag                                                           >  2:199768/1‑140 (MQ=255)

                                                                             gATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGtt                                                        <  1:13355/140‑1 (MQ=255)

                                                                              atcatcTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGttt                                                       <  2:1364737/140‑1 (MQ=255)

                                                                              atcatcTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGttt                                                       <  2:13441/140‑1 (MQ=255)

                                                                              atcatcTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGttt                                                       <  2:866609/140‑1 (MQ=255)

                                                                              atcatcTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGttt                                                       >  1:1347689/1‑140 (MQ=255)

                                                                              atcatcTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGttt                                                       <  1:304790/140‑1 (MQ=255)

                                                                               tcatcTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTc                                                      >  1:205515/1‑140 (MQ=255)

                                                                                  tctcATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGt                                                   >  2:910331/1‑140 (MQ=255)

                                                                                   ctcATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTc                                                  <  1:199768/140‑1 (MQ=255)

                                                                                    tcATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTcc                                                 >  1:450919/1‑140 (MQ=255)

                                                                                    tcATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTcc                                                 >  1:390736/1‑140 (MQ=255)

                                                                                    tcATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATAAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTcc                                                 <  1:1318035/140‑1 (MQ=255)

                                                                                      aTTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTa                                               >  2:74815/1‑140 (MQ=255)

                                                                                        tctcCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACa                                             >  1:312263/1‑140 (MQ=255)

                                                                                        tctcCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACa                                             >  1:1201912/1‑140 (MQ=255)

                                                                                          tcCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACatt                                           >  1:674819/1‑140 (MQ=255)

                                                                                           ccGTTAATTCTTTGTCATAACGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACattt                                          >  2:550682/1‑139 (MQ=255)

                                                                                            cGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACattat                                         >  1:527423/1‑140 (MQ=255)

                                                                                             gTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACattatt                                        >  2:993822/1‑140 (MQ=255)

                                                                                                aaTTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAAt                                     >  1:357808/1‑140 (MQ=255)

                                                                                                     tttGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAAtt                                <  2:1347689/140‑1 (MQ=255)

                                                                                                      ttGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAAttt                               >  1:170472/1‑140 (MQ=255)

                                                                                                       tGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAAtttt                              >  1:748667/1‑140 (MQ=255)

                                                                                                       tGTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAAtttt                              <  1:327703/140‑1 (MQ=255)

                                                                                                        gTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAAttttt                             >  2:1262133/1‑140 (MQ=255)

                                                                                                        gTCATATCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAAttttt                             <  1:441207/140‑1 (MQ=255)

                                                                                                           atatCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGc                          >  1:1078032/1‑140 (MQ=255)

                                                                                                             atCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCAt                        >  1:224765/1‑140 (MQ=255)

                                                                                                             atCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCAt                        <  1:535991/140‑1 (MQ=255)

                                                                                                              tCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATa                       <  2:748667/140‑1 (MQ=255)

                                                                                                              tCGCACATTTTCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATa                       >  2:1193517/1‑140 (MQ=255)

                                                                                                                     ttttCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGata                <  1:993822/140‑1 (MQ=255)

                                                                                                                     ttttCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGata                <  1:872369/140‑1 (MQ=255)

                                                                                                                       ttCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATc              >  2:187395/1‑140 (MQ=255)

                                                                                                                       ttCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATc              <  1:453355/140‑1 (MQ=255)

                                                                                                                        tCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCa             >  2:841310/1‑140 (MQ=255)

                                                                                                                        tCGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCa             >  2:769390/1‑140 (MQ=255)

                                                                                                                         cGTTATACCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCaa            <  2:450919/140‑1 (MQ=255)

                                                                                                                            tataCCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAAt         <  1:1443187/140‑1 (MQ=255)

                                                                                                                              taCCCTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAATcc       >  1:490167/1‑140 (MQ=255)

                                                                                                                                cccTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAATCcac     >  2:1307693/1‑140 (MQ=255)

                                                                                                                                cccTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAATCcac     >  2:866403/1‑140 (MQ=255)

                                                                                                                                cccTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAATCcac     <  1:841310/140‑1 (MQ=255)

                                                                                                                                accTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAATCcac     <  2:376455/139‑1 (MQ=255)

                                                                                                                                 ccTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAATCcaca    <  1:1042965/140‑1 (MQ=255)

                                                                                                                                 ccTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAATCcaca    <  1:386249/140‑1 (MQ=255)

                                                                                                                                  cTGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAATCCACAt   <  2:1201912/140‑1 (MQ=255)

                                                                                                                                   tGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAATCCACAta  >  1:563387/1‑140 (MQ=255)

                                                                                                                                   tGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAATCCACAta  <  2:312263/140‑1 (MQ=255)

                                                                                                                                   tGGGCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAATCCACAta  <  1:1246919/140‑1 (MQ=255)

                                                                                                                                   ggggCGCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAATCCTCAta  <  1:1193517/139‑1 (MQ=255)

GCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGAATTTTTTGCATAAGTGATATCAAAATCCACATA  >  NC_000913/317054‑317324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A